data_OL5 # _chem_comp.id OL5 _chem_comp.name "N-biotin-C-Co4(mu3-O)4(OAc)(Py)3(H2O)3-beta-alanine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C30 H40 Co4 N6 O13 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2017-09-20 _chem_comp.pdbx_modified_date 2018-02-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 960.469 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OL5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6AUH _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OL5 O04 O1 O 0 1 N N N -14.517 0.592 -8.217 -14.517 0.592 -8.217 O04 OL5 1 OL5 C13 C1 C 0 1 N N N -13.283 0.521 -8.476 -13.283 0.521 -8.476 C13 OL5 2 OL5 N03 N1 N 0 1 N N N -12.361 0.693 -7.513 -12.361 0.693 -7.513 N03 OL5 3 OL5 C11 C2 C 0 1 N N R -11.043 0.623 -8.111 -11.043 0.623 -8.111 C11 OL5 4 OL5 C10 C3 C 0 1 N N N -10.310 -0.628 -7.650 -10.310 -0.628 -7.650 C10 OL5 5 OL5 S01 S1 S 0 1 N N N -10.862 -2.043 -8.598 -10.862 -2.043 -8.598 S01 OL5 6 OL5 N02 N2 N 0 1 N N N -12.808 0.336 -9.704 -12.808 0.336 -9.704 N02 OL5 7 OL5 C12 C4 C 0 1 N N S -11.323 0.364 -9.659 -11.323 0.364 -9.659 C12 OL5 8 OL5 C09 C5 C 0 1 N N S -10.725 -1.007 -10.040 -10.725 -1.007 -10.040 C09 OL5 9 OL5 C08 C6 C 0 1 N N N -11.302 -1.659 -11.300 -11.302 -1.659 -11.300 C08 OL5 10 OL5 C07 C7 C 0 1 N N N -10.492 -2.816 -11.887 -10.492 -2.816 -11.887 C07 OL5 11 OL5 C06 C8 C 0 1 N N N -11.166 -3.440 -13.138 -11.166 -3.440 -13.138 C06 OL5 12 OL5 C05 C9 C 0 1 N N N -10.339 -4.568 -13.749 -10.339 -4.568 -13.749 C05 OL5 13 OL5 C01 C10 C 0 1 N N N -9.014 -4.023 -14.313 -9.014 -4.023 -14.313 C01 OL5 14 OL5 O01 O2 O 0 1 N N N -8.979 -2.929 -14.951 -8.979 -2.929 -14.951 O01 OL5 15 OL5 N01 N3 N 0 1 N N N -7.949 -4.733 -14.068 -7.949 -4.733 -14.068 N01 OL5 16 OL5 C02 C11 C 0 1 N N N -6.654 -4.260 -14.528 -6.654 -4.260 -14.528 C02 OL5 17 OL5 C37 C12 C 0 1 N N N -6.456 -4.936 -15.854 -6.456 -4.936 -15.854 C37 OL5 18 OL5 C04 C13 C 0 1 N N N -5.379 -4.279 -16.607 -5.379 -4.279 -16.607 C04 OL5 19 OL5 O14 O3 O 0 1 N N N -5.280 -4.659 -17.860 -5.280 -4.659 -17.860 O14 OL5 20 OL5 O03 O4 O 0 1 N N N -4.646 -3.339 -16.021 -4.646 -3.339 -16.021 O03 OL5 21 OL5 CO4 CO1 CO 0 0 N N N -3.171 -2.318 -16.878 -3.171 -2.318 -16.878 CO4 OL5 22 OL5 O05 O5 O 0 1 N N N -2.537 -3.950 -17.390 -2.537 -3.950 -17.390 O05 OL5 23 OL5 O07 O6 O 0 1 N N N -1.721 -1.466 -17.795 -1.721 -1.466 -17.795 O07 OL5 24 OL5 N07 N4 N 0 1 Y N N -1.857 -2.766 -15.106 -1.857 -2.766 -15.106 N07 OL5 25 OL5 C44 C14 C 0 1 Y N N -2.126 -3.848 -14.331 -2.126 -3.848 -14.331 C44 OL5 26 OL5 C43 C15 C 0 1 Y N N -1.296 -4.058 -13.209 -1.296 -4.058 -13.209 C43 OL5 27 OL5 C42 C16 C 0 1 Y N N -0.284 -3.122 -12.934 -0.284 -3.122 -12.934 C42 OL5 28 OL5 C41 C17 C 0 1 Y N N -0.141 -2.070 -13.709 -0.141 -2.070 -13.709 C41 OL5 29 OL5 C40 C18 C 0 1 Y N N -0.909 -1.861 -14.753 -0.909 -1.861 -14.753 C40 OL5 30 OL5 CO1 CO2 CO 0 0 N N N -1.251 -3.270 -18.513 -1.251 -3.270 -18.513 CO1 OL5 31 OL5 O12 O7 O 0 1 N N N -4.413 -1.803 -18.317 -4.413 -1.803 -18.317 O12 OL5 32 OL5 CO3 CO3 CO 0 0 N N N -2.950 -1.237 -19.239 -2.950 -1.237 -19.239 CO3 OL5 33 OL5 N06 N5 N 0 1 Y N N -4.343 -0.821 -20.785 -4.343 -0.821 -20.785 N06 OL5 34 OL5 C34 C19 C 0 1 Y N N -4.063 -0.962 -22.104 -4.063 -0.962 -22.104 C34 OL5 35 OL5 C35 C20 C 0 1 Y N N -4.975 -0.661 -23.004 -4.975 -0.661 -23.004 C35 OL5 36 OL5 C30 C21 C 0 1 Y N N -6.143 -0.182 -22.671 -6.143 -0.182 -22.671 C30 OL5 37 OL5 C29 C22 C 0 1 Y N N -6.496 0.036 -21.317 -6.496 0.036 -21.317 C29 OL5 38 OL5 C28 C23 C 0 1 Y N N -5.530 -0.284 -20.344 -5.530 -0.284 -20.344 C28 OL5 39 OL5 O11 O8 O 0 1 N N N -1.279 -0.814 -20.399 -1.279 -0.814 -20.399 O11 OL5 40 OL5 C16 C24 C 0 1 N N N -0.064 -1.600 -20.569 -0.064 -1.600 -20.569 C16 OL5 41 OL5 C17 C25 C 0 1 N N N 1.109 -1.314 -21.516 1.109 -1.314 -21.516 C17 OL5 42 OL5 O10 O9 O 0 1 N N N 0.137 -2.730 -19.779 0.137 -2.730 -19.779 O10 OL5 43 OL5 O15 O10 O 0 1 N N N -3.838 -0.622 -16.294 -3.838 -0.622 -16.294 O15 OL5 44 OL5 O06 O11 O 0 1 N N N -2.429 -2.753 -19.998 -2.429 -2.753 -19.998 O06 OL5 45 OL5 CO2 CO4 CO 0 0 N N N -3.854 -3.757 -18.932 -3.854 -3.757 -18.932 CO2 OL5 46 OL5 O09 O12 O 0 1 N N N -3.365 -5.649 -19.539 -3.365 -5.649 -19.539 O09 OL5 47 OL5 O08 O13 O 0 1 N N N -0.868 -5.067 -19.307 -0.868 -5.067 -19.307 O08 OL5 48 OL5 N05 N6 N 0 1 Y N N -5.175 -3.677 -20.381 -5.175 -3.677 -20.381 N05 OL5 49 OL5 C32 C26 C 0 1 Y N N -6.436 -3.274 -20.029 -6.436 -3.274 -20.029 C32 OL5 50 OL5 C33 C27 C 0 1 Y N N -7.451 -3.212 -21.000 -7.451 -3.212 -21.000 C33 OL5 51 OL5 C26 C28 C 0 1 Y N N -7.144 -3.611 -22.306 -7.144 -3.611 -22.306 C26 OL5 52 OL5 C25 C29 C 0 1 Y N N -5.837 -4.037 -22.624 -5.837 -4.037 -22.624 C25 OL5 53 OL5 C24 C30 C 0 1 Y N N -4.836 -4.087 -21.632 -4.836 -4.087 -21.632 C24 OL5 54 OL5 H1 H1 H 0 1 N N N -12.553 0.844 -6.543 -12.553 0.844 -6.543 H1 OL5 55 OL5 H2 H2 H 0 1 N N N -10.446 1.535 -7.962 -10.446 1.535 -7.962 H2 OL5 56 OL5 H3 H3 H 0 1 N N N -9.228 -0.491 -7.795 -9.228 -0.491 -7.795 H3 OL5 57 OL5 H4 H4 H 0 1 N N N -10.518 -0.800 -6.584 -10.518 -0.800 -6.584 H4 OL5 58 OL5 H5 H5 H 0 1 N N N -13.361 0.200 -10.526 -13.361 0.200 -10.526 H5 OL5 59 OL5 H6 H6 H 0 1 N N N -10.900 1.173 -10.273 -10.900 1.173 -10.273 H6 OL5 60 OL5 H7 H7 H 0 1 N N N -9.645 -0.869 -10.196 -9.645 -0.869 -10.196 H7 OL5 61 OL5 H8 H8 H 0 1 N N N -12.304 -2.041 -11.053 -12.304 -2.041 -11.053 H8 OL5 62 OL5 H9 H9 H 0 1 N N N -11.386 -0.881 -12.073 -11.386 -0.881 -12.073 H9 OL5 63 OL5 H10 H10 H 0 1 N N N -9.498 -2.441 -12.172 -9.498 -2.441 -12.172 H10 OL5 64 OL5 H11 H11 H 0 1 N N N -10.384 -3.596 -11.119 -10.384 -3.596 -11.119 H11 OL5 65 OL5 H12 H12 H 0 1 N N N -12.148 -3.841 -12.846 -12.148 -3.841 -12.846 H12 OL5 66 OL5 H13 H13 H 0 1 N N N -11.302 -2.653 -13.894 -11.302 -2.653 -13.894 H13 OL5 67 OL5 H14 H14 H 0 1 N N N -10.121 -5.317 -12.974 -10.121 -5.318 -12.974 H14 OL5 68 OL5 H15 H15 H 0 1 N N N -10.912 -5.037 -14.562 -10.912 -5.037 -14.562 H15 OL5 69 OL5 H16 H16 H 0 1 N N N -8.022 -5.596 -13.568 -8.022 -5.596 -13.568 H16 OL5 70 OL5 H17 H17 H 0 1 N N N -6.659 -3.166 -14.646 -6.659 -3.166 -14.646 H17 OL5 71 OL5 H18 H18 H 0 1 N N N -5.861 -4.549 -13.822 -5.861 -4.549 -13.822 H18 OL5 72 OL5 H19 H19 H 0 1 N N N -6.191 -5.991 -15.687 -6.191 -5.990 -15.687 H19 OL5 73 OL5 H20 H20 H 0 1 N N N -7.390 -4.880 -16.433 -7.390 -4.880 -16.433 H20 OL5 74 OL5 H21 H21 H 0 1 N N N -4.665 -5.056 -16.296 -4.665 -5.056 -16.296 H21 OL5 75 OL5 H22 H22 H 0 1 N N N -2.940 -4.519 -14.563 -2.940 -4.519 -14.563 H22 OL5 76 OL5 H23 H23 H 0 1 N N N -1.436 -4.921 -12.574 -1.436 -4.921 -12.574 H23 OL5 77 OL5 H24 H24 H 0 1 N N N 0.373 -3.267 -12.089 0.373 -3.267 -12.089 H24 OL5 78 OL5 H25 H25 H 0 1 N N N 0.634 -1.354 -13.479 0.634 -1.354 -13.479 H25 OL5 79 OL5 H26 H26 H 0 1 N N N -0.785 -0.961 -15.336 -0.785 -0.961 -15.336 H26 OL5 80 OL5 H27 H27 H 0 1 N N N -3.093 -1.321 -22.416 -3.093 -1.321 -22.416 H27 OL5 81 OL5 H28 H28 H 0 1 N N N -4.750 -0.815 -24.049 -4.751 -0.815 -24.049 H28 OL5 82 OL5 H29 H29 H 0 1 N N N -6.857 0.054 -23.446 -6.857 0.054 -23.447 H29 OL5 83 OL5 H30 H30 H 0 1 N N N -7.463 0.430 -21.043 -7.463 0.430 -21.043 H30 OL5 84 OL5 H31 H31 H 0 1 N N N -5.714 -0.115 -19.293 -5.714 -0.115 -19.293 H31 OL5 85 OL5 H32 H32 H 0 1 N N N -0.553 -2.212 -21.341 -0.553 -2.212 -21.341 H32 OL5 86 OL5 H33 H33 H 0 1 N N N 1.871 -2.099 -21.404 1.871 -2.099 -21.404 H33 OL5 87 OL5 H34 H34 H 0 1 N N N 0.747 -1.300 -22.555 0.747 -1.301 -22.555 H34 OL5 88 OL5 H35 H35 H 0 1 N N N 1.550 -0.337 -21.269 1.550 -0.337 -21.269 H35 OL5 89 OL5 H39 H39 H 0 1 N N N -6.651 -3.004 -19.006 -6.651 -3.004 -19.006 H39 OL5 90 OL5 H40 H40 H 0 1 N N N -8.442 -2.866 -20.745 -8.442 -2.866 -20.745 H40 OL5 91 OL5 H41 H41 H 0 1 N N N -7.907 -3.593 -23.070 -7.907 -3.593 -23.070 H41 OL5 92 OL5 H42 H42 H 0 1 N N N -5.601 -4.328 -23.637 -5.601 -4.328 -23.637 H42 OL5 93 OL5 H43 H43 H 0 1 N N N -3.839 -4.437 -21.857 -3.839 -4.437 -21.857 H43 OL5 94 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OL5 O04 C13 DOUB N N 1 OL5 C13 N03 SING N N 2 OL5 C13 N02 SING N N 3 OL5 N03 C11 SING N N 4 OL5 C11 C10 SING N N 5 OL5 C11 C12 SING N N 6 OL5 C10 S01 SING N N 7 OL5 S01 C09 SING N N 8 OL5 N02 C12 SING N N 9 OL5 C12 C09 SING N N 10 OL5 C09 C08 SING N N 11 OL5 C08 C07 SING N N 12 OL5 C07 C06 SING N N 13 OL5 C06 C05 SING N N 14 OL5 C05 C01 SING N N 15 OL5 C01 O01 DOUB N N 16 OL5 C01 N01 SING N N 17 OL5 N01 C02 SING N N 18 OL5 C02 C37 SING N N 19 OL5 C37 C04 SING N N 20 OL5 C04 O14 SING N N 21 OL5 C04 O03 SING N N 22 OL5 O14 CO2 SING N N 23 OL5 O03 CO4 SING N N 24 OL5 CO4 O05 SING N N 25 OL5 CO4 O07 SING N N 26 OL5 CO4 N07 SING N N 27 OL5 CO4 O12 SING N N 28 OL5 CO4 O15 SING N N 29 OL5 O05 CO1 SING N N 30 OL5 O05 CO2 SING N N 31 OL5 O07 CO1 SING N N 32 OL5 O07 CO3 SING N N 33 OL5 N07 C44 DOUB Y N 34 OL5 N07 C40 SING Y N 35 OL5 C44 C43 SING Y N 36 OL5 C43 C42 DOUB Y N 37 OL5 C42 C41 SING Y N 38 OL5 C41 C40 DOUB Y N 39 OL5 CO1 O10 SING N N 40 OL5 CO1 O06 SING N N 41 OL5 CO1 O08 SING N N 42 OL5 O12 CO3 SING N N 43 OL5 O12 CO2 SING N N 44 OL5 CO3 N06 SING N N 45 OL5 CO3 O11 SING N N 46 OL5 CO3 O06 SING N N 47 OL5 N06 C34 DOUB Y N 48 OL5 N06 C28 SING Y N 49 OL5 C34 C35 SING Y N 50 OL5 C35 C30 DOUB Y N 51 OL5 C30 C29 SING Y N 52 OL5 C29 C28 DOUB Y N 53 OL5 O11 C16 SING N N 54 OL5 C16 C17 SING N N 55 OL5 C16 O10 SING N N 56 OL5 O06 CO2 SING N N 57 OL5 CO2 O09 SING N N 58 OL5 CO2 N05 SING N N 59 OL5 N05 C32 DOUB Y N 60 OL5 N05 C24 SING Y N 61 OL5 C32 C33 SING Y N 62 OL5 C33 C26 DOUB Y N 63 OL5 C26 C25 SING Y N 64 OL5 C25 C24 DOUB Y N 65 OL5 N03 H1 SING N N 66 OL5 C11 H2 SING N N 67 OL5 C10 H3 SING N N 68 OL5 C10 H4 SING N N 69 OL5 N02 H5 SING N N 70 OL5 C12 H6 SING N N 71 OL5 C09 H7 SING N N 72 OL5 C08 H8 SING N N 73 OL5 C08 H9 SING N N 74 OL5 C07 H10 SING N N 75 OL5 C07 H11 SING N N 76 OL5 C06 H12 SING N N 77 OL5 C06 H13 SING N N 78 OL5 C05 H14 SING N N 79 OL5 C05 H15 SING N N 80 OL5 N01 H16 SING N N 81 OL5 C02 H17 SING N N 82 OL5 C02 H18 SING N N 83 OL5 C37 H19 SING N N 84 OL5 C37 H20 SING N N 85 OL5 C04 H21 SING N N 86 OL5 C44 H22 SING N N 87 OL5 C43 H23 SING N N 88 OL5 C42 H24 SING N N 89 OL5 C41 H25 SING N N 90 OL5 C40 H26 SING N N 91 OL5 C34 H27 SING N N 92 OL5 C35 H28 SING N N 93 OL5 C30 H29 SING N N 94 OL5 C29 H30 SING N N 95 OL5 C28 H31 SING N N 96 OL5 C16 H32 SING N N 97 OL5 C17 H33 SING N N 98 OL5 C17 H34 SING N N 99 OL5 C17 H35 SING N N 100 OL5 C32 H39 SING N N 101 OL5 C33 H40 SING N N 102 OL5 C26 H41 SING N N 103 OL5 C25 H42 SING N N 104 OL5 C24 H43 SING N N 105 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OL5 InChI InChI 1.03 ;InChI=1S/C13H21N3O4S.3C5H5N.C2H4O2.4Co.3H2O.4O/c17-10(14-6-5-11(18)19)4-2-1-3-9-12-8(7-21-9)15-13(20)16-12;3*1-2-4-6-5-3-1;1-2(3)4;;;;;;;;;;;/h8-9,11-12H,1-7H2,(H,14,17)(H2,15,16,20);3*1-5H;2H,1H3;;;;;3*1H2;;;;/q-2;;;;-2;+1;3*+2;;;;;;;/p-3/t8-,9-,12-;;;;;;;;;;;;;;;/m0.............../s1 ; OL5 InChIKey InChI 1.03 ZITWXEAVFQMEQP-FSSUFVEMSA-K OL5 SMILES_CANONICAL CACTVS 3.385 "O.O.O.CC1O[Co]2O[Co](O1)O[Co]3OC(CCNC(=O)CCCC[C@@H]4SC[C@@H]5NC(=O)N[C@H]45)O[Co](O2)O3.c6ccncc6.c7ccncc7.c8ccncc8" OL5 SMILES CACTVS 3.385 "O.O.O.CC1O[Co]2O[Co](O1)O[Co]3OC(CCNC(=O)CCCC[CH]4SC[CH]5NC(=O)N[CH]45)O[Co](O2)O3.c6ccncc6.c7ccncc7.c8ccncc8" OL5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "CC1O[Co]23(O4[Co]5(O1)(O2[Co]67(O3[Co]4(O56)(OC(O7)CCNC(=O)CCCC[C@H]8[C@@H]9[C@H](CS8)NC(=O)N9)([N]1=CC=CC=C1)[O])([N]1=CC=CC=C1)[O])[O])[N]1=CC=CC=C1" OL5 SMILES "OpenEye OEToolkits" 2.0.6 "CC1O[Co]23(O4[Co]5(O1)(O2[Co]67(O3[Co]4(O56)(OC(O7)CCNC(=O)CCCCC8C9C(CS8)NC(=O)N9)([N]1=CC=CC=C1)[O])([N]1=CC=CC=C1)[O])[O])[N]1=CC=CC=C1" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OL5 "Create component" 2017-09-20 RCSB OL5 "Initial release" 2018-02-28 RCSB #