data_OL6 # _chem_comp.id OL6 _chem_comp.name "(2R,4S)-5,5-dimethyl-2-[(1R)-1-(2-naphthalen-1-yloxyethanoylamino)-2-oxidanyl-2-oxidanylidene-ethyl]-1,3-thiazolidine-4-carboxylic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 N2 O6 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2023-02-07 _chem_comp.pdbx_modified_date 2024-02-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 418.463 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OL6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8I8F _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OL6 C4 C1 C 0 1 N N N N N N -13.674 18.556 -27.100 -5.673 -0.423 -1.709 C4 OL6 1 OL6 C5 C2 C 0 1 N N R N N N -16.838 17.113 -25.832 -2.845 0.099 -0.365 C5 OL6 2 OL6 C6 C3 C 0 1 N N R N N N -17.920 18.012 -25.100 -1.575 0.918 -0.127 C6 OL6 3 OL6 C7 C4 C 0 1 N N N N N N -19.861 16.729 -24.353 0.807 0.406 -0.082 C7 OL6 4 OL6 C9 C5 C 0 1 Y N N N N N -22.148 14.874 -26.398 4.327 -0.593 0.084 C9 OL6 5 OL6 C10 C6 C 0 1 Y N N N N N -21.614 14.262 -27.567 5.579 -0.032 -0.238 C10 OL6 6 OL6 C15 C7 C 0 1 Y N N N N N -22.494 14.007 -28.657 6.756 -0.789 -0.016 C15 OL6 7 OL6 C11 C8 C 0 1 Y N N N N N -20.260 13.861 -27.691 5.683 1.263 -0.773 C11 OL6 8 OL6 C12 C9 C 0 1 Y N N N N N -19.812 13.241 -28.822 6.910 1.772 -1.071 C12 OL6 9 OL6 C13 C10 C 0 1 Y N N N N N -20.671 12.999 -29.883 8.068 1.028 -0.854 C13 OL6 10 OL6 C3 C11 C 0 1 N N S N N N -15.137 18.154 -27.169 -5.272 0.281 -0.438 C3 OL6 11 OL6 O1 O1 O 0 1 N N N N N N -13.228 19.279 -28.025 -4.850 -0.637 -2.567 O1 OL6 12 OL6 O2 O2 O 0 1 N N N N N N -21.244 15.041 -25.386 3.187 0.114 -0.127 O2 OL6 13 OL6 C8 C12 C 0 1 N N N N N N -21.266 16.283 -24.694 1.955 -0.523 0.218 C8 OL6 14 OL6 C14 C13 C 0 1 Y N N N N N -21.982 13.373 -29.815 8.005 -0.230 -0.337 C14 OL6 15 OL6 C17 C14 C 0 1 Y N N N N N -24.321 14.951 -27.390 5.427 -2.593 0.824 C17 OL6 16 OL6 C18 C15 C 0 1 Y N N N N N -23.479 15.210 -26.318 4.267 -1.855 0.603 C18 OL6 17 OL6 N N1 N 0 1 N N N N N N -15.568 17.810 -25.817 -4.005 0.983 -0.666 N OL6 18 OL6 C C16 C 0 1 N N N N N N -15.497 17.398 -29.556 -6.080 -0.347 1.870 C OL6 19 OL6 O O3 O 0 1 N N N N N N -13.028 18.173 -26.103 -6.944 -0.818 -1.885 O OL6 20 OL6 C1 C17 C 0 1 N N N N N N -15.429 16.958 -28.097 -5.185 -0.756 0.698 C1 OL6 21 OL6 C16 C18 C 0 1 Y N N N N N -23.856 14.369 -28.534 6.653 -2.083 0.520 C16 OL6 22 OL6 C19 C19 C 0 1 N N N N N N -18.002 19.443 -25.658 -1.788 1.847 1.040 C19 OL6 23 OL6 C2 C20 C 0 1 N N N N N N -14.490 15.761 -27.933 -5.567 -2.148 0.192 C2 OL6 24 OL6 N1 N2 N 0 1 N N N N N N -19.158 17.290 -25.339 -0.459 0.015 0.165 N1 OL6 25 OL6 O3 O4 O 0 1 N N N N N N -19.415 16.570 -23.221 1.023 1.506 -0.546 O3 OL6 26 OL6 O4 O5 O 0 1 N N N N N N -17.011 20.184 -25.460 -2.763 2.768 0.996 O4 OL6 27 OL6 O5 O6 O 0 1 N N N N N N -19.064 19.784 -26.221 -1.080 1.764 2.016 O5 OL6 28 OL6 S S1 S 0 1 N N N N N N -17.130 16.518 -27.527 -3.415 -0.708 1.188 S OL6 29 OL6 H H1 H 0 1 N N N N N N -16.734 16.196 -25.234 -2.694 -0.634 -1.157 H OL6 30 OL6 H1 H2 H 0 1 N N N N N N -17.689 18.047 -24.025 -1.346 1.502 -1.019 H1 OL6 31 OL6 H13 H3 H 0 1 N N N N N N -19.573 14.049 -26.879 4.794 1.850 -0.948 H13 OL6 32 OL6 H14 H4 H 0 1 N N N N N N -18.778 12.936 -28.891 6.987 2.767 -1.483 H14 OL6 33 OL6 H15 H5 H 0 1 N N N N N N -20.299 12.510 -30.771 9.029 1.455 -1.100 H15 OL6 34 OL6 H8 H6 H 0 1 N N N N N N -15.719 19.016 -27.527 -6.039 1.013 -0.186 H8 OL6 35 OL6 H11 H7 H 0 1 N N N N N N -21.742 17.043 -25.331 1.957 -0.766 1.281 H11 OL6 36 OL6 H12 H8 H 0 1 N N N N N N -21.844 16.169 -23.765 1.844 -1.438 -0.364 H12 OL6 37 OL6 H16 H9 H 0 1 N N N N N N -22.636 13.183 -30.653 8.911 -0.795 -0.173 H16 OL6 38 OL6 H18 H10 H 0 1 N N N N N N -25.366 15.215 -27.318 5.353 -3.589 1.236 H18 OL6 39 OL6 H19 H11 H 0 1 N N N N N N -23.868 15.674 -25.424 3.308 -2.287 0.846 H19 OL6 40 OL6 H9 H12 H 0 1 N N N N N N -14.878 17.222 -25.395 -3.954 1.339 -1.609 H9 OL6 41 OL6 H4 H14 H 0 1 N N N N N N -16.177 18.258 -29.649 -5.972 -1.069 2.679 H4 OL6 42 OL6 H2 H15 H 0 1 N N N N N N -14.492 17.686 -29.899 -5.785 0.641 2.224 H2 OL6 43 OL6 H3 H16 H 0 1 N N N N N N -15.871 16.567 -30.172 -7.119 -0.320 1.542 H3 OL6 44 OL6 H21 H17 H 0 1 N N N N N N -12.142 18.513 -26.149 -7.153 -1.266 -2.716 H21 OL6 45 OL6 H17 H18 H 0 1 N N N N N N -24.535 14.183 -29.353 7.542 -2.671 0.694 H17 OL6 46 OL6 H5 H19 H 0 1 N N N N N N -14.457 15.462 -26.875 -6.601 -2.139 -0.152 H5 OL6 47 OL6 H6 H20 H 0 1 N N N N N N -14.858 14.921 -28.540 -4.911 -2.427 -0.633 H6 OL6 48 OL6 H7 H21 H 0 1 N N N N N N -13.479 16.039 -28.267 -5.459 -2.871 1.001 H7 OL6 49 OL6 H10 H22 H 0 1 N N N N N N -19.496 17.211 -26.277 -0.631 -0.865 0.536 H10 OL6 50 OL6 H22 H23 H 0 1 N N N N N N -17.189 21.051 -25.805 -2.861 3.341 1.768 H22 OL6 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OL6 C13 C14 DOUB Y N 1 OL6 C13 C12 SING Y N 2 OL6 C14 C15 SING Y N 3 OL6 C C1 SING N N 4 OL6 C12 C11 DOUB Y N 5 OL6 C15 C16 DOUB Y N 6 OL6 C15 C10 SING Y N 7 OL6 C16 C17 SING Y N 8 OL6 C1 C2 SING N N 9 OL6 C1 S SING N N 10 OL6 C1 C3 SING N N 11 OL6 O1 C4 DOUB N N 12 OL6 C11 C10 SING Y N 13 OL6 C10 C9 DOUB Y N 14 OL6 S C5 SING N N 15 OL6 C17 C18 DOUB Y N 16 OL6 C3 C4 SING N N 17 OL6 C3 N SING N N 18 OL6 C4 O SING N N 19 OL6 C9 C18 SING Y N 20 OL6 C9 O2 SING N N 21 OL6 O5 C19 DOUB N N 22 OL6 C5 N SING N N 23 OL6 C5 C6 SING N N 24 OL6 C19 O4 SING N N 25 OL6 C19 C6 SING N N 26 OL6 O2 C8 SING N N 27 OL6 N1 C6 SING N N 28 OL6 N1 C7 SING N N 29 OL6 C8 C7 SING N N 30 OL6 C7 O3 DOUB N N 31 OL6 C5 H SING N N 32 OL6 C6 H1 SING N N 33 OL6 C11 H13 SING N N 34 OL6 C12 H14 SING N N 35 OL6 C13 H15 SING N N 36 OL6 C3 H8 SING N N 37 OL6 C8 H11 SING N N 38 OL6 C8 H12 SING N N 39 OL6 C14 H16 SING N N 40 OL6 C17 H18 SING N N 41 OL6 C18 H19 SING N N 42 OL6 N H9 SING N N 43 OL6 C H4 SING N N 44 OL6 C H2 SING N N 45 OL6 C H3 SING N N 46 OL6 O H21 SING N N 47 OL6 C16 H17 SING N N 48 OL6 C2 H5 SING N N 49 OL6 C2 H6 SING N N 50 OL6 C2 H7 SING N N 51 OL6 N1 H10 SING N N 52 OL6 O4 H22 SING N N 53 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OL6 InChI InChI 1.06 "InChI=1S/C20H22N2O6S/c1-20(2)16(19(26)27)22-17(29-20)15(18(24)25)21-14(23)10-28-13-9-5-7-11-6-3-4-8-12(11)13/h3-9,15-17,22H,10H2,1-2H3,(H,21,23)(H,24,25)(H,26,27)/t15-,16-,17+/m0/s1" OL6 InChIKey InChI 1.06 UGGIHYYCRXQWCH-YESZJQIVSA-N OL6 SMILES_CANONICAL CACTVS 3.385 "CC1(C)S[C@@H](N[C@H]1C(O)=O)[C@H](NC(=O)COc2cccc3ccccc23)C(O)=O" OL6 SMILES CACTVS 3.385 "CC1(C)S[CH](N[CH]1C(O)=O)[CH](NC(=O)COc2cccc3ccccc23)C(O)=O" OL6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC1([C@@H](N[C@H](S1)[C@@H](C(=O)O)NC(=O)COc2cccc3c2cccc3)C(=O)O)C" OL6 SMILES "OpenEye OEToolkits" 2.0.7 "CC1(C(NC(S1)C(C(=O)O)NC(=O)COc2cccc3c2cccc3)C(=O)O)C" # _pdbx_chem_comp_identifier.comp_id OL6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{R},4~{S})-5,5-dimethyl-2-[(1~{R})-1-(2-naphthalen-1-yloxyethanoylamino)-2-oxidanyl-2-oxidanylidene-ethyl]-1,3-thiazolidine-4-carboxylic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OL6 "Create component" 2023-02-07 PDBJ OL6 "Initial release" 2024-02-07 RCSB #