data_OM1 # _chem_comp.id OM1 _chem_comp.name "(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL-[[2-[(4-METHOXYPHENYL)METHYLCARBAMOYL]PHENYL]METHYL]AZANIUM" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H25 N2 O6" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2011-07-01 _chem_comp.pdbx_modified_date 2014-09-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 449.476 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OM1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZT1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OM1 C15 C15 C 0 1 Y N N -11.422 5.628 -19.358 1.428 -4.140 -1.671 C15 OM1 1 OM1 C16 C16 C 0 1 Y N N -12.500 6.037 -18.599 0.194 -4.681 -1.359 C16 OM1 2 OM1 C14 C14 C 0 1 Y N N -10.347 4.992 -18.754 1.863 -2.994 -1.039 C14 OM1 3 OM1 C17 C17 C 0 1 Y N N -12.490 5.807 -17.234 -0.613 -4.077 -0.412 C17 OM1 4 OM1 C23 C23 C 0 1 Y N N -9.333 7.597 -12.097 -2.877 1.960 1.238 C23 OM1 5 OM1 C6 C6 C 0 1 Y N N -5.868 6.326 -15.274 4.652 1.815 -0.631 C6 OM1 6 OM1 C10 C10 C 0 1 Y N N -6.844 4.561 -14.018 5.668 0.484 1.083 C10 OM1 7 OM1 C24 C24 C 0 1 Y N N -9.293 8.526 -11.066 -3.529 3.042 0.668 C24 OM1 8 OM1 C7 C7 C 0 1 Y N N -5.671 7.056 -14.113 5.902 2.165 -1.104 C7 OM1 9 OM1 C9 C9 C 0 1 Y N N -6.652 5.273 -12.856 6.920 0.831 0.614 C9 OM1 10 OM1 C13 C13 C 0 1 Y N N -10.337 4.762 -17.384 1.053 -2.379 -0.082 C13 OM1 11 OM1 C30 C30 C 0 1 Y N N -10.580 9.121 -13.514 -4.481 0.468 0.249 C30 OM1 12 OM1 C5 C5 C 0 1 Y N N -6.455 5.075 -15.236 4.535 0.975 0.461 C5 OM1 13 OM1 C18 C18 C 0 1 Y N N -11.424 5.175 -16.625 -0.191 -2.930 0.228 C18 OM1 14 OM1 C22 C22 C 0 1 Y N N -9.962 7.884 -13.308 -3.343 0.680 1.035 C22 OM1 15 OM1 C25 C25 C 0 1 Y N N -9.915 9.736 -11.285 -4.656 2.849 -0.112 C25 OM1 16 OM1 C29 C29 C 0 1 Y N N -10.530 10.032 -12.468 -5.139 1.560 -0.327 C29 OM1 17 OM1 C8 C8 C 0 1 Y N N -6.066 6.520 -12.901 7.040 1.673 -0.482 C8 OM1 18 OM1 C2 C2 C 0 1 N N N -9.156 4.083 -16.786 1.513 -1.151 0.601 C2 OM1 19 OM1 C31 C31 C 0 1 N N N -11.258 9.493 -14.796 -4.983 -0.901 0.028 C31 OM1 20 OM1 C27 C27 C 0 1 N N N -10.565 11.805 -11.183 -6.199 2.941 -1.722 C27 OM1 21 OM1 C12 C12 C 0 1 N N N -5.610 8.556 -11.821 9.398 1.471 -0.257 C12 OM1 22 OM1 C4 C4 C 0 1 N N N -6.678 4.286 -16.500 3.170 0.596 0.975 C4 OM1 23 OM1 C19 C19 C 0 1 N N N -11.500 4.974 -15.149 -1.072 -2.273 1.260 C19 OM1 24 OM1 C21 C21 C 0 1 N N N -9.951 6.804 -14.343 -2.628 -0.491 1.658 C21 OM1 25 OM1 N3 N3 N 0 1 N N N -7.948 4.663 -17.094 2.715 -0.622 0.299 N3 OM1 26 OM1 N20 N20 N 1 1 N N N -11.326 6.230 -14.363 -1.769 -1.131 0.652 N20 OM1 27 OM1 O33 O33 O 0 1 N N N -11.217 10.722 -15.121 -4.540 -1.620 -1.022 O33 OM1 28 OM1 O1 O1 O 0 1 N N N -9.276 3.090 -16.072 0.806 -0.618 1.434 O1 OM1 29 OM1 O32 O32 O 0 1 N N N -11.799 8.580 -15.481 -5.797 -1.380 0.793 O32 OM1 30 OM1 O26 O26 O 0 1 N N N -9.988 10.764 -10.378 -5.462 3.732 -0.771 O26 OM1 31 OM1 O28 O28 O 0 1 N N N -11.076 11.301 -12.440 -6.245 1.635 -1.118 O28 OM1 32 OM1 O11 O11 O 0 1 N N N -5.925 7.167 -11.681 8.271 2.015 -0.946 O11 OM1 33 OM1 H15 H15 H 0 1 N N N -11.415 5.803 -20.424 2.056 -4.619 -2.409 H15 OM1 34 OM1 H16 H16 H 0 1 N N N -13.341 6.530 -19.064 -0.142 -5.579 -1.857 H16 OM1 35 OM1 H14 H14 H 0 1 N N N -9.509 4.672 -19.355 2.827 -2.573 -1.283 H14 OM1 36 OM1 H17 H17 H 0 1 N N N -13.330 6.127 -16.635 -1.576 -4.504 -0.173 H17 OM1 37 OM1 H23 H23 H 0 1 N N N -8.867 6.632 -11.958 -1.995 2.121 1.841 H23 OM1 38 OM1 H24 H24 H 0 1 N N N -8.796 8.310 -10.132 -3.155 4.042 0.834 H24 OM1 39 OM1 H6 H6 H 0 1 N N N -5.559 6.740 -16.222 3.766 2.201 -1.112 H6 OM1 40 OM1 H7 H7 H 0 1 N N N -5.214 8.034 -14.154 5.993 2.820 -1.957 H7 OM1 41 OM1 H10 H10 H 0 1 N N N -7.306 3.586 -13.975 5.574 -0.172 1.936 H10 OM1 42 OM1 H9 H9 H 0 1 N N N -6.960 4.855 -11.909 7.805 0.447 1.100 H9 OM1 43 OM1 H41C H41C H 0 0 N N N -5.865 4.496 -17.211 3.223 0.417 2.049 H41C OM1 44 OM1 H42C H42C H 0 0 N N N -6.689 3.212 -16.263 2.468 1.406 0.776 H42C OM1 45 OM1 H191 H191 H 0 0 N N N -12.484 4.546 -14.907 -1.804 -2.993 1.625 H191 OM1 46 OM1 H192 H192 H 0 0 N N N -10.710 4.267 -14.854 -0.459 -1.924 2.091 H192 OM1 47 OM1 H211 H211 H 0 0 N N N -9.699 7.223 -15.328 -2.015 -0.142 2.489 H211 OM1 48 OM1 H212 H212 H 0 0 N N N -9.218 6.028 -14.076 -3.359 -1.211 2.023 H212 OM1 49 OM1 H3 H3 H 0 1 N N N -7.944 5.396 -17.775 3.279 -1.047 -0.366 H3 OM1 50 OM1 H33 H33 H 0 1 N N N -11.655 10.844 -15.955 -4.898 -2.512 -1.125 H33 OM1 51 OM1 H271 H271 H 0 0 N N N -11.391 12.269 -10.624 -7.206 3.339 -1.852 H271 OM1 52 OM1 H272 H272 H 0 0 N N N -9.794 12.561 -11.391 -5.675 2.903 -2.677 H272 OM1 53 OM1 H121 H121 H 0 0 N N N -5.511 9.012 -10.825 9.378 1.793 0.785 H121 OM1 54 OM1 H122 H122 H 0 0 N N N -4.662 8.664 -12.369 9.361 0.382 -0.301 H122 OM1 55 OM1 H123 H123 H 0 0 N N N -6.414 9.060 -12.377 10.316 1.822 -0.728 H123 OM1 56 OM1 H20 H20 H 0 1 N N N -11.940 6.919 -14.748 -1.092 -0.464 0.314 H20 OM1 57 OM1 H220 H220 H 0 0 N N N -11.591 6.039 -13.418 -2.336 -1.454 -0.117 H220 OM1 58 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OM1 C15 C16 SING Y N 1 OM1 C15 C14 DOUB Y N 2 OM1 C16 C17 DOUB Y N 3 OM1 C14 C13 SING Y N 4 OM1 C17 C18 SING Y N 5 OM1 C23 C24 SING Y N 6 OM1 C23 C22 DOUB Y N 7 OM1 C6 C7 SING Y N 8 OM1 C6 C5 DOUB Y N 9 OM1 C10 C9 DOUB Y N 10 OM1 C10 C5 SING Y N 11 OM1 C24 C25 DOUB Y N 12 OM1 C7 C8 DOUB Y N 13 OM1 C9 C8 SING Y N 14 OM1 C13 C18 DOUB Y N 15 OM1 C13 C2 SING N N 16 OM1 C30 C22 SING Y N 17 OM1 C30 C29 DOUB Y N 18 OM1 C30 C31 SING N N 19 OM1 C5 C4 SING N N 20 OM1 C18 C19 SING N N 21 OM1 C22 C21 SING N N 22 OM1 C25 C29 SING Y N 23 OM1 C25 O26 SING N N 24 OM1 C29 O28 SING N N 25 OM1 C8 O11 SING N N 26 OM1 C2 N3 SING N N 27 OM1 C2 O1 DOUB N N 28 OM1 C31 O33 SING N N 29 OM1 C31 O32 DOUB N N 30 OM1 C27 O26 SING N N 31 OM1 C27 O28 SING N N 32 OM1 C12 O11 SING N N 33 OM1 C4 N3 SING N N 34 OM1 C19 N20 SING N N 35 OM1 C21 N20 SING N N 36 OM1 C15 H15 SING N N 37 OM1 C16 H16 SING N N 38 OM1 C14 H14 SING N N 39 OM1 C17 H17 SING N N 40 OM1 C23 H23 SING N N 41 OM1 C24 H24 SING N N 42 OM1 C6 H6 SING N N 43 OM1 C7 H7 SING N N 44 OM1 C10 H10 SING N N 45 OM1 C9 H9 SING N N 46 OM1 C4 H41C SING N N 47 OM1 C4 H42C SING N N 48 OM1 C19 H191 SING N N 49 OM1 C19 H192 SING N N 50 OM1 C21 H211 SING N N 51 OM1 C21 H212 SING N N 52 OM1 N3 H3 SING N N 53 OM1 O33 H33 SING N N 54 OM1 C27 H271 SING N N 55 OM1 C27 H272 SING N N 56 OM1 C12 H121 SING N N 57 OM1 C12 H122 SING N N 58 OM1 C12 H123 SING N N 59 OM1 N20 H20 SING N N 60 OM1 N20 H220 SING N N 61 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OM1 SMILES ACDLabs 12.01 "O=C(NCc1ccc(OC)cc1)c2ccccc2C[NH2+]Cc3ccc4OCOc4c3C(=O)O" OM1 InChI InChI 1.03 "InChI=1S/C25H24N2O6/c1-31-19-9-6-16(7-10-19)12-27-24(28)20-5-3-2-4-17(20)13-26-14-18-8-11-21-23(33-15-32-21)22(18)25(29)30/h2-11,26H,12-15H2,1H3,(H,27,28)(H,29,30)/p+1" OM1 InChIKey InChI 1.03 KFDRXOMFDTWNBI-UHFFFAOYSA-O OM1 SMILES_CANONICAL CACTVS 3.385 "COc1ccc(CNC(=O)c2ccccc2C[NH2+]Cc3ccc4OCOc4c3C(O)=O)cc1" OM1 SMILES CACTVS 3.385 "COc1ccc(CNC(=O)c2ccccc2C[NH2+]Cc3ccc4OCOc4c3C(O)=O)cc1" OM1 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "COc1ccc(cc1)CNC(=O)c2ccccc2C[NH2+]Cc3ccc4c(c3C(=O)O)OCO4" OM1 SMILES "OpenEye OEToolkits" 1.9.2 "COc1ccc(cc1)CNC(=O)c2ccccc2C[NH2+]Cc3ccc4c(c3C(=O)O)OCO4" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OM1 "SYSTEMATIC NAME" ACDLabs 12.01 "(4-carboxy-1,3-benzodioxol-5-yl)-N-{2-[(4-methoxybenzyl)carbamoyl]benzyl}methanaminium" OM1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "(4-carboxy-1,3-benzodioxol-5-yl)methyl-[[2-[(4-methoxyphenyl)methylcarbamoyl]phenyl]methyl]azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OM1 "Create component" 2011-07-01 EBI OM1 "Modify descriptor" 2014-09-05 RCSB #