data_OM2 # _chem_comp.id OM2 _chem_comp.name "(R)-[2-[[(2S)-BUTAN-2-YL]CARBAMOYL]PHENYL]METHYL-[(4-CARBOXY-1,3-BENZODIOXOL-5-YL)METHYL]-METHYL-AZANIUM" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C22 H27 N2 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2011-07-01 _chem_comp.pdbx_modified_date 2023-09-23 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 399.460 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OM2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3ZSZ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OM2 C1 C1 C 0 1 Y N N 36.482 -32.872 -18.081 -4.624 -2.062 1.563 C1 OM2 1 OM2 C2 C2 C 0 1 Y N N 36.259 -31.683 -17.423 -4.068 -3.251 1.125 C2 OM2 2 OM2 C3 C3 C 0 1 Y N N 36.833 -34.001 -17.380 -4.135 -0.857 1.102 C3 OM2 3 OM2 C4 C4 C 0 1 Y N N 36.381 -31.629 -16.052 -3.020 -3.240 0.222 C4 OM2 4 OM2 C5 C5 C 0 1 Y N N 33.293 -32.400 -10.836 3.194 -2.198 -0.504 C5 OM2 5 OM2 C6 C6 C 0 1 Y N N 32.441 -32.937 -9.876 4.362 -1.854 0.156 C6 OM2 6 OM2 C7 C7 C 0 1 Y N N 36.962 -33.937 -16.008 -3.078 -0.840 0.191 C7 OM2 7 OM2 C8 C8 C 0 1 Y N N 32.857 -34.245 -12.326 2.444 0.083 -0.377 C8 OM2 8 OM2 C9 C9 C 0 1 Y N N 36.736 -32.749 -15.326 -2.522 -2.042 -0.247 C9 OM2 9 OM2 C10 C10 C 0 1 Y N N 33.504 -33.045 -12.058 2.238 -1.243 -0.772 C10 OM2 10 OM2 C11 C11 C 0 1 Y N N 31.810 -34.127 -10.156 4.582 -0.546 0.554 C11 OM2 11 OM2 C12 C12 C 0 1 Y N N 32.010 -34.751 -11.345 3.625 0.431 0.290 C12 OM2 12 OM2 C13 C13 C 0 1 N N N 37.353 -35.196 -15.342 -2.549 0.448 -0.308 C13 OM2 13 OM2 C14 C14 C 0 1 N N N 33.048 -34.949 -13.628 1.425 1.108 -0.662 C14 OM2 14 OM2 C15 C15 C 0 1 N N N 30.495 -35.804 -10.226 5.486 1.451 0.977 C15 OM2 15 OM2 C16 C16 C 0 1 N N N 38.908 -37.032 -11.055 -2.085 3.703 1.934 C16 OM2 16 OM2 C17 C17 C 0 1 N N N 36.573 -37.188 -13.250 -3.235 3.229 -1.708 C17 OM2 17 OM2 C18 C18 C 0 1 N N N 36.256 -33.611 -11.694 0.169 -2.856 0.406 C18 OM2 18 OM2 C19 C19 C 0 1 N N N 36.857 -32.605 -13.831 -1.380 -2.033 -1.230 C19 OM2 19 OM2 C20 C20 C 0 1 N N N 34.442 -32.466 -13.076 0.970 -1.626 -1.491 C20 OM2 20 OM2 C21 C21 C 0 1 N N N 38.958 -36.622 -12.535 -2.857 3.985 0.643 C21 OM2 21 OM2 C22 C22 C 0 1 N N S 37.593 -36.075 -12.942 -2.564 2.884 -0.377 C22 OM2 22 OM2 N23 N23 N 0 1 N N N 37.714 -35.084 -14.002 -3.088 1.608 0.117 N23 OM2 23 OM2 N24 N24 N 1 1 N N N 35.752 -33.225 -13.053 -0.124 -1.754 -0.520 N24 OM2 24 OM2 O25 O25 O 0 1 N N N 32.031 -35.510 -14.087 0.607 1.404 0.186 O25 OM2 25 OM2 O26 O26 O 0 1 N N N 37.397 -36.220 -16.014 -1.628 0.460 -1.102 O26 OM2 26 OM2 O27 O27 O 0 1 N N N 34.169 -34.901 -14.202 1.400 1.718 -1.863 O27 OM2 27 OM2 O28 O28 O 0 1 N N N 30.944 -34.798 -9.344 5.630 0.037 1.207 O28 OM2 28 OM2 O29 O29 O 0 1 N N N 31.289 -35.913 -11.412 4.071 1.622 0.777 O29 OM2 29 OM2 H1 H1 H 0 1 N N N 36.380 -32.918 -19.155 -5.444 -2.077 2.265 H1 OM2 30 OM2 H2 H2 H 0 1 N N N 35.990 -30.797 -17.979 -4.455 -4.192 1.489 H2 OM2 31 OM2 H3 H3 H 0 1 N N N 37.007 -34.932 -17.900 -4.569 0.070 1.445 H3 OM2 32 OM2 H4 H4 H 0 1 N N N 36.196 -30.698 -15.537 -2.591 -4.172 -0.116 H4 OM2 33 OM2 H5 H5 H 0 1 N N N 33.800 -31.468 -10.633 3.033 -3.220 -0.814 H5 OM2 34 OM2 H6 H6 H 0 1 N N N 32.279 -32.432 -8.935 5.105 -2.610 0.362 H6 OM2 35 OM2 H191 H191 H 0 0 N N N 37.801 -33.074 -13.517 -1.312 -3.005 -1.719 H191 OM2 36 OM2 H192 H192 H 0 0 N N N 36.884 -31.532 -13.592 -1.552 -1.260 -1.980 H192 OM2 37 OM2 H201 H201 H 0 0 N N N 33.991 -32.546 -14.076 0.720 -0.857 -2.221 H201 OM2 38 OM2 H202 H202 H 0 0 N N N 34.628 -31.408 -12.841 1.116 -2.578 -2.002 H202 OM2 39 OM2 H23 H23 H 0 1 N N N 38.109 -34.206 -13.731 -3.822 1.598 0.750 H23 OM2 40 OM2 H27 H27 H 0 1 N N N 34.119 -35.356 -15.034 0.713 2.383 -2.004 H27 OM2 41 OM2 H151 H151 H 0 0 N N N 30.522 -36.769 -9.698 5.821 2.016 1.847 H151 OM2 42 OM2 H152 H152 H 0 0 N N N 29.460 -35.575 -10.519 6.039 1.752 0.087 H152 OM2 43 OM2 H161 H161 H 0 0 N N N 39.888 -37.428 -10.750 -2.395 2.740 2.339 H161 OM2 44 OM2 H162 H162 H 0 0 N N N 38.660 -36.154 -10.440 -1.017 3.681 1.720 H162 OM2 45 OM2 H163 H163 H 0 0 N N N 38.140 -37.807 -10.915 -2.294 4.488 2.661 H163 OM2 46 OM2 H211 H211 H 0 0 N N N 39.724 -35.846 -12.678 -3.926 4.007 0.856 H211 OM2 47 OM2 H212 H212 H 0 0 N N N 39.204 -37.498 -13.153 -2.547 4.948 0.237 H212 OM2 48 OM2 H171 H171 H 0 0 N N N 35.612 -36.736 -13.536 -3.026 2.444 -2.435 H171 OM2 49 OM2 H172 H172 H 0 0 N N N 36.947 -37.809 -14.077 -4.312 3.311 -1.561 H172 OM2 50 OM2 H173 H173 H 0 0 N N N 36.432 -37.814 -12.356 -2.845 4.178 -2.076 H173 OM2 51 OM2 H22 H22 H 0 1 N N N 37.203 -35.548 -12.059 -1.487 2.802 -0.524 H22 OM2 52 OM2 H181 H181 H 0 0 N N N 35.440 -34.070 -11.116 1.102 -2.652 0.931 H181 OM2 53 OM2 H182 H182 H 0 0 N N N 37.080 -34.331 -11.800 -0.641 -2.949 1.129 H182 OM2 54 OM2 H183 H183 H 0 0 N N N 36.618 -32.715 -11.169 0.264 -3.786 -0.155 H183 OM2 55 OM2 H224 H224 H 0 0 N N N 35.558 -34.090 -13.515 -0.215 -0.894 -0.001 H224 OM2 56 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OM2 C1 C2 SING Y N 1 OM2 C1 C3 DOUB Y N 2 OM2 C2 C4 DOUB Y N 3 OM2 C3 C7 SING Y N 4 OM2 C4 C9 SING Y N 5 OM2 C5 C6 SING Y N 6 OM2 C5 C10 DOUB Y N 7 OM2 C6 C11 DOUB Y N 8 OM2 C7 C9 DOUB Y N 9 OM2 C7 C13 SING N N 10 OM2 C8 C10 SING Y N 11 OM2 C8 C12 DOUB Y N 12 OM2 C8 C14 SING N N 13 OM2 C9 C19 SING N N 14 OM2 C10 C20 SING N N 15 OM2 C11 C12 SING Y N 16 OM2 C11 O28 SING N N 17 OM2 C12 O29 SING N N 18 OM2 C13 N23 SING N N 19 OM2 C13 O26 DOUB N N 20 OM2 C14 O25 DOUB N N 21 OM2 C14 O27 SING N N 22 OM2 C15 O28 SING N N 23 OM2 C15 O29 SING N N 24 OM2 C16 C21 SING N N 25 OM2 C17 C22 SING N N 26 OM2 C18 N24 SING N N 27 OM2 C19 N24 SING N N 28 OM2 C20 N24 SING N N 29 OM2 C21 C22 SING N N 30 OM2 C22 N23 SING N N 31 OM2 C1 H1 SING N N 32 OM2 C2 H2 SING N N 33 OM2 C3 H3 SING N N 34 OM2 C4 H4 SING N N 35 OM2 C5 H5 SING N N 36 OM2 C6 H6 SING N N 37 OM2 C19 H191 SING N N 38 OM2 C19 H192 SING N N 39 OM2 C20 H201 SING N N 40 OM2 C20 H202 SING N N 41 OM2 N23 H23 SING N N 42 OM2 O27 H27 SING N N 43 OM2 C15 H151 SING N N 44 OM2 C15 H152 SING N N 45 OM2 C16 H161 SING N N 46 OM2 C16 H162 SING N N 47 OM2 C16 H163 SING N N 48 OM2 C21 H211 SING N N 49 OM2 C21 H212 SING N N 50 OM2 C17 H171 SING N N 51 OM2 C17 H172 SING N N 52 OM2 C17 H173 SING N N 53 OM2 C22 H22 SING N N 54 OM2 C18 H181 SING N N 55 OM2 C18 H182 SING N N 56 OM2 C18 H183 SING N N 57 OM2 N24 H224 SING N N 58 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OM2 InChI InChI 1.06 "InChI=1S/C22H26N2O5/c1-4-14(2)23-21(25)17-8-6-5-7-15(17)11-24(3)12-16-9-10-18-20(29-13-28-18)19(16)22(26)27/h5-10,14H,4,11-13H2,1-3H3,(H,23,25)(H,26,27)/p+1/t14-/m0/s1" OM2 InChIKey InChI 1.06 LEXXIHURLIJXII-AWEZNQCLSA-O OM2 SMILES_CANONICAL CACTVS 3.385 "CC[C@H](C)NC(=O)c1ccccc1C[NH+](C)Cc2ccc3OCOc3c2C(O)=O" OM2 SMILES CACTVS 3.385 "CC[CH](C)NC(=O)c1ccccc1C[NH+](C)Cc2ccc3OCOc3c2C(O)=O" OM2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC[C@H](C)NC(=O)c1ccccc1C[NH+](C)Cc2ccc3c(c2C(=O)O)OCO3" OM2 SMILES "OpenEye OEToolkits" 2.0.7 "CCC(C)NC(=O)c1ccccc1C[NH+](C)Cc2ccc3c(c2C(=O)O)OCO3" # _pdbx_chem_comp_identifier.comp_id OM2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[2-[[(2~{S})-butan-2-yl]carbamoyl]phenyl]methyl-[(4-carboxy-1,3-benzodioxol-5-yl)methyl]-methyl-azanium" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OM2 "Create component" 2011-07-01 EBI OM2 "Other modification" 2011-07-01 EBI OM2 "Modify descriptor" 2023-09-23 RCSB #