data_ONE # _chem_comp.id ONE _chem_comp.name "1-(BETA-D-RIBOFURANOSYL)-PYRIDIN-4-ONE-5'-PHOSPHATE" _chem_comp.type "RNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C10 H14 N O8 P" _chem_comp.mon_nstd_parent_comp_id U _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-03-09 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 307.194 _chem_comp.one_letter_code U _chem_comp.three_letter_code ONE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ONE OP3 O3P O 0 1 N Y N 20.064 104.521 18.488 -2.143 0.966 -4.598 OP3 ONE 1 ONE P P P 0 1 N N N 19.858 104.532 16.897 -1.030 -0.000 -3.951 P ONE 2 ONE OP1 O1P O 0 1 N N N 20.865 105.421 16.256 -1.648 -1.298 -3.601 OP1 ONE 3 ONE OP2 O2P O 0 1 N N N 19.732 103.125 16.448 0.155 -0.239 -5.013 OP2 ONE 4 ONE "O5'" O5* O 0 1 N N N 18.412 105.170 16.740 -0.431 0.684 -2.623 "O5'" ONE 5 ONE "C5'" C5* C 0 1 N N N 17.413 104.850 17.696 0.545 -0.216 -2.098 "C5'" ONE 6 ONE "C4'" C4* C 0 1 N N R 16.179 105.681 17.497 1.157 0.377 -0.827 "C4'" ONE 7 ONE "O4'" O4* O 0 1 N N N 15.788 105.661 16.099 0.138 0.564 0.181 "O4'" ONE 8 ONE "C3'" C3* C 0 1 N N S 14.997 105.149 18.283 2.161 -0.609 -0.193 "C3'" ONE 9 ONE "C2'" C2* C 0 1 N N R 14.325 104.226 17.268 1.955 -0.434 1.327 "C2'" ONE 10 ONE "O2'" O2* O 0 1 N N N 12.964 103.942 17.520 3.161 0.018 1.947 "O2'" ONE 11 ONE "O3'" O3* O 0 1 N N N 14.192 106.241 18.721 3.499 -0.267 -0.560 "O3'" ONE 12 ONE "C1'" C1* C 0 1 N N R 14.548 104.989 15.960 0.851 0.640 1.435 "C1'" ONE 13 ONE N1 N1 N 0 1 N N N 14.634 104.143 14.760 -0.045 0.340 2.554 N1 ONE 14 ONE C6 C6 C 0 1 N N N 15.850 103.763 14.252 -0.171 1.238 3.562 C6 ONE 15 ONE C2 C2 C 0 1 N N N 13.487 103.720 14.150 -0.735 -0.827 2.555 C2 ONE 16 ONE C3 C3 C 0 1 N N N 13.508 102.948 13.060 -1.566 -1.135 3.574 C3 ONE 17 ONE C4 C4 C 0 1 N N N 14.764 102.525 12.488 -1.720 -0.220 4.642 C4 ONE 18 ONE O4 O4 O 0 1 N N N 14.816 101.846 11.463 -2.469 -0.470 5.575 O4 ONE 19 ONE C5 C5 C 0 1 N N N 15.951 102.992 13.165 -0.990 0.991 4.607 C5 ONE 20 ONE HOP3 3HOP H 0 0 N N N 19.421 103.953 18.897 -2.475 0.520 -5.389 HOP3 ONE 21 ONE HOP2 2HOP H 0 0 N N N 19.610 103.131 15.505 0.530 0.628 -5.214 HOP2 ONE 22 ONE "H5''" 2H5* H 0 0 N N N 17.177 103.760 17.691 1.329 -0.374 -2.839 "H5''" ONE 23 ONE "H5'" 1H5* H 0 1 N N N 17.801 104.937 18.737 0.070 -1.169 -1.862 "H5'" ONE 24 ONE "H4'" H4* H 0 1 N N N 16.433 106.709 17.846 1.648 1.324 -1.051 "H4'" ONE 25 ONE "H3'" H3* H 0 1 N N N 15.238 104.598 19.222 1.933 -1.632 -0.494 "H3'" ONE 26 ONE "H2'" H2* H 0 1 N N N 14.755 103.197 17.281 1.623 -1.369 1.778 "H2'" ONE 27 ONE HO2 2HO H 0 1 N N N 12.546 103.368 16.888 3.827 -0.665 1.795 HO2 ONE 28 ONE HO3 3HO H 0 1 N Y N 13.451 105.907 19.213 4.081 -0.897 -0.112 HO3 ONE 29 ONE "H1'" H1* H 0 1 N N N 13.669 105.657 15.807 1.294 1.628 1.560 "H1'" ONE 30 ONE H6 H6 H 0 1 N N N 16.784 104.090 14.737 0.388 2.161 3.529 H6 ONE 31 ONE H2 H2 H 0 1 N N N 12.503 104.013 14.554 -0.613 -1.520 1.737 H2 ONE 32 ONE H3 H3 H 0 1 N N N 12.523 102.669 12.647 -2.110 -2.068 3.572 H3 ONE 33 ONE H5 H5 H 0 1 N N N 16.976 102.750 12.838 -1.086 1.709 5.408 H5 ONE 34 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ONE OP3 P SING N N 1 ONE OP3 HOP3 SING N N 2 ONE P OP1 DOUB N N 3 ONE P OP2 SING N N 4 ONE P "O5'" SING N N 5 ONE OP2 HOP2 SING N N 6 ONE "O5'" "C5'" SING N N 7 ONE "C5'" "C4'" SING N N 8 ONE "C5'" "H5''" SING N N 9 ONE "C5'" "H5'" SING N N 10 ONE "C4'" "O4'" SING N N 11 ONE "C4'" "C3'" SING N N 12 ONE "C4'" "H4'" SING N N 13 ONE "O4'" "C1'" SING N N 14 ONE "C3'" "C2'" SING N N 15 ONE "C3'" "O3'" SING N N 16 ONE "C3'" "H3'" SING N N 17 ONE "C2'" "O2'" SING N N 18 ONE "C2'" "C1'" SING N N 19 ONE "C2'" "H2'" SING N N 20 ONE "O2'" HO2 SING N N 21 ONE "O3'" HO3 SING N N 22 ONE "C1'" N1 SING N N 23 ONE "C1'" "H1'" SING N N 24 ONE N1 C6 SING N N 25 ONE N1 C2 SING N N 26 ONE C6 C5 DOUB N N 27 ONE C6 H6 SING N N 28 ONE C2 C3 DOUB N N 29 ONE C2 H2 SING N N 30 ONE C3 C4 SING N N 31 ONE C3 H3 SING N N 32 ONE C4 O4 DOUB N N 33 ONE C4 C5 SING N N 34 ONE C5 H5 SING N N 35 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ONE SMILES ACDLabs 10.04 "O=C1C=CN(C=C1)C2OC(C(O)C2O)COP(=O)(O)O" ONE SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1CO[P](O)(O)=O)N2C=CC(=O)C=C2" ONE SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)N2C=CC(=O)C=C2" ONE SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1=CN(C=CC1=O)[C@H]2[C@@H]([C@@H]([C@H](O2)COP(=O)(O)O)O)O" ONE SMILES "OpenEye OEToolkits" 1.5.0 "C1=CN(C=CC1=O)C2C(C(C(O2)COP(=O)(O)O)O)O" ONE InChI InChI 1.03 "InChI=1S/C10H14NO8P/c12-6-1-3-11(4-2-6)10-9(14)8(13)7(19-10)5-18-20(15,16)17/h1-4,7-10,13-14H,5H2,(H2,15,16,17)/t7-,8-,9-,10-/m1/s1" ONE InChIKey InChI 1.03 SMHHXNJIRLTYFN-ZYUZMQFOSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ONE "SYSTEMATIC NAME" ACDLabs 10.04 "1-(5-O-phosphono-beta-D-ribofuranosyl)pyridin-4(1H)-one" ONE "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5R)-3,4-dihydroxy-5-(4-oxopyridin-1-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ONE "Create component" 2000-03-09 EBI ONE "Modify descriptor" 2011-06-04 RCSB #