data_ONH # _chem_comp.id ONH _chem_comp.name N~5~-hydroxy-L-ornithine _chem_comp.type "L-peptide linking" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C5 H12 N2 O3" _chem_comp.mon_nstd_parent_comp_id ALA _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-06-02 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 148.160 _chem_comp.one_letter_code A _chem_comp.three_letter_code ONH _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3S5W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ONH C C C 0 1 N N N N N N 100.518 39.985 133.018 -2.671 -0.285 0.029 C ONH 1 ONH N N N 0 1 N N N N N N 100.800 37.534 133.380 -1.437 1.796 -0.199 N ONH 2 ONH O O O 0 1 N N N N N N 99.778 39.671 132.051 -3.331 0.272 0.874 O ONH 3 ONH CA CA C 0 1 N N S N N N 101.286 38.882 133.738 -1.406 0.355 -0.483 CA ONH 4 ONH CB CB C 0 1 N N N N N N 102.794 38.993 133.506 -0.198 -0.277 0.211 CB ONH 5 ONH CD CD C 0 1 N N N N N N 105.025 38.053 133.994 2.298 -0.348 0.298 CD ONH 6 ONH NE NE N 0 1 N N N N N N 105.762 37.034 134.695 3.534 0.189 -0.286 NE ONH 7 ONH CG CG C 0 1 N N N N N N 103.545 37.921 134.275 1.089 0.283 -0.397 CG ONH 8 ONH OZ OZ O 0 1 N N N N N N 107.137 36.935 134.412 4.713 -0.393 0.355 OZ ONH 9 ONH OXT OXT O 0 1 N Y N N N N 100.623 41.194 133.411 -3.061 -1.477 -0.449 OXT ONH 10 ONH HN HN H 0 1 N Y N N N N 101.331 36.846 133.874 -1.508 1.967 0.793 HN ONH 11 ONH HNA HNA H 0 1 N N N N N N 99.835 37.451 133.628 -0.630 2.258 -0.589 HNA ONH 12 ONH HA HA H 0 1 N N N N N N 101.096 39.027 134.812 -1.330 0.198 -1.559 HA ONH 13 ONH HB HB H 0 1 N N N N N N 103.000 38.873 132.432 -0.228 -0.044 1.276 HB ONH 14 ONH HBA HBA H 0 1 N N N N N N 103.136 39.982 133.846 -0.224 -1.358 0.075 HBA ONH 15 ONH HD HD H 0 1 N N N N N N 105.198 37.945 132.913 2.272 -1.429 0.161 HD ONH 16 ONH HDA HDA H 0 1 N N N N N N 105.369 39.043 134.329 2.268 -0.116 1.362 HDA ONH 17 ONH HG HG H 0 1 N N N N N N 103.362 38.044 135.353 1.120 0.051 -1.461 HG ONH 18 ONH HGA HGA H 0 1 N N N N N N 103.197 36.927 133.957 1.116 1.364 -0.260 HGA ONH 19 ONH HOXT HOXT H 0 0 N Y N N N N 100.076 41.752 132.870 -3.879 -1.848 -0.090 HOXT ONH 20 ONH HOZ HOZ H 0 1 N N N N N N 107.517 36.234 134.928 5.553 -0.069 0.003 HOZ ONH 21 ONH HNE HNE H 0 1 N N N N N N 105.677 37.229 135.672 3.556 0.043 -1.284 HNE ONH 22 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ONH O C DOUB N N 1 ONH C OXT SING N N 2 ONH C CA SING N N 3 ONH N CA SING N N 4 ONH N HN SING N N 5 ONH N HNA SING N N 6 ONH CB CA SING N N 7 ONH CA HA SING N N 8 ONH CB CG SING N N 9 ONH CB HB SING N N 10 ONH CB HBA SING N N 11 ONH CD CG SING N N 12 ONH CD NE SING N N 13 ONH CD HD SING N N 14 ONH CD HDA SING N N 15 ONH OZ NE SING N N 16 ONH CG HG SING N N 17 ONH CG HGA SING N N 18 ONH OXT HOXT SING N N 19 ONH OZ HOZ SING N N 20 ONH NE HNE SING N N 21 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ONH SMILES ACDLabs 12.01 "O=C(O)C(N)CCCNO" ONH SMILES_CANONICAL CACTVS 3.370 "N[C@@H](CCCNO)C(O)=O" ONH SMILES CACTVS 3.370 "N[CH](CCCNO)C(O)=O" ONH SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "C(C[C@@H](C(=O)O)N)CNO" ONH SMILES "OpenEye OEToolkits" 1.7.2 "C(CC(C(=O)O)N)CNO" ONH InChI InChI 1.03 "InChI=1S/C5H12N2O3/c6-4(5(8)9)2-1-3-7-10/h4,7,10H,1-3,6H2,(H,8,9)/t4-/m0/s1" ONH InChIKey InChI 1.03 OZMJDTPATROLQC-BYPYZUCNSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ONH "SYSTEMATIC NAME" ACDLabs 12.01 N~5~-hydroxy-L-ornithine ONH "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-2-azanyl-5-(oxidanylamino)pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ONH "Create component" 2011-06-02 RCSB ONH "Modify descriptor" 2011-06-04 RCSB ONH "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ONH ? Ornithine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 ONH ? Hydroxylation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? #