data_ONL # _chem_comp.id ONL _chem_comp.name 5-OXO-L-NORLEUCINE _chem_comp.type "L-PEPTIDE LINKING" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C6 H11 N O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 145.156 _chem_comp.one_letter_code X _chem_comp.three_letter_code ONL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1ECG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site EBI _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ONL N N N 0 1 N N N Y Y N 76.787 15.603 32.096 1.150 1.861 -0.131 N ONL 1 ONL CA CA C 0 1 N N S Y N N 75.365 15.943 32.397 1.090 0.512 0.448 CA ONL 2 ONL C C C 0 1 N N N Y N Y 74.800 16.645 31.197 2.319 -0.262 0.047 C ONL 3 ONL O O O 0 1 N N N Y N Y 73.570 16.730 31.152 2.967 0.089 -0.910 O ONL 4 ONL OXT OXT O 0 1 N Y N Y N Y 75.596 17.132 30.352 2.692 -1.341 0.752 OXT ONL 5 ONL CB CB C 0 1 N N N N N N 75.252 16.894 33.582 -0.158 -0.208 -0.066 CB ONL 6 ONL CG CG C 0 1 N N N N N N 76.241 18.024 33.529 -1.409 0.508 0.447 CG ONL 7 ONL CD CD C 0 1 N N N N N N 76.409 18.678 34.881 -2.638 -0.201 -0.060 CD ONL 8 ONL OD OD O 0 1 N N N N N N 76.502 17.998 35.909 -2.525 -1.179 -0.759 OD ONL 9 ONL CE CE C 0 1 N N N N N N 76.410 20.204 34.938 -4.008 0.310 0.306 CE ONL 10 ONL H HN1 H 0 1 N N N Y Y N 76.910 15.527 31.106 1.930 2.381 0.243 HN1 ONL 11 ONL H2 HN2 H 0 1 N Y N Y Y N 77.384 16.322 32.452 1.192 1.821 -1.138 HN2 ONL 12 ONL HA HA H 0 1 N N N Y N N 74.826 15.015 32.637 1.045 0.585 1.535 HA ONL 13 ONL HXT HXT H 0 1 N Y N Y N Y 75.104 17.577 29.672 3.487 -1.805 0.456 HXT ONL 14 ONL HB1 HB1 H 0 1 N N N N N N 74.239 17.322 33.585 -0.157 -0.203 -1.156 HB1 ONL 15 ONL HB2 HB2 H 0 1 N N N N N N 75.464 16.313 34.492 -0.157 -1.238 0.292 HB2 ONL 16 ONL HG1 HG1 H 0 1 N N N N N N 77.214 17.628 33.204 -1.410 0.503 1.536 HG1 ONL 17 ONL HG2 HG2 H 0 1 N N N N N N 75.865 18.780 32.824 -1.410 1.538 0.088 HG2 ONL 18 ONL HE1 HE1 H 0 1 N N N N N N 76.410 20.532 35.988 -4.338 1.030 -0.442 HE1 ONL 19 ONL HE2 HE2 H 0 1 N N N N N N 77.308 20.589 34.433 -4.709 -0.524 0.342 HE2 ONL 20 ONL HE3 HE3 H 0 1 N N N N N N 75.512 20.590 34.434 -3.967 0.792 1.282 HE3 ONL 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ONL N CA SING N N 1 ONL N H SING N N 2 ONL N H2 SING N N 3 ONL CA C SING N N 4 ONL CA CB SING N N 5 ONL CA HA SING N N 6 ONL C O DOUB N N 7 ONL C OXT SING N N 8 ONL OXT HXT SING N N 9 ONL CB CG SING N N 10 ONL CB HB1 SING N N 11 ONL CB HB2 SING N N 12 ONL CG CD SING N N 13 ONL CG HG1 SING N N 14 ONL CG HG2 SING N N 15 ONL CD OD DOUB N N 16 ONL CD CE SING N N 17 ONL CE HE1 SING N N 18 ONL CE HE2 SING N N 19 ONL CE HE3 SING N N 20 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ONL SMILES ACDLabs 10.04 "O=C(CCC(N)C(=O)O)C" ONL SMILES_CANONICAL CACTVS 3.341 "CC(=O)CC[C@H](N)C(O)=O" ONL SMILES CACTVS 3.341 "CC(=O)CC[CH](N)C(O)=O" ONL SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(=O)CC[C@@H](C(=O)O)N" ONL SMILES "OpenEye OEToolkits" 1.5.0 "CC(=O)CCC(C(=O)O)N" ONL InChI InChI 1.03 "InChI=1S/C6H11NO3/c1-4(8)2-3-5(7)6(9)10/h5H,2-3,7H2,1H3,(H,9,10)/t5-/m0/s1" ONL InChIKey InChI 1.03 KSIJECNNZVKMJG-YFKPBYRVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ONL "SYSTEMATIC NAME" ACDLabs 10.04 5-oxo-L-norleucine ONL "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S)-2-amino-5-oxo-hexanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ONL "Create component" 1999-07-08 EBI ONL "Modify descriptor" 2011-06-04 RCSB ONL "Modify backbone" 2023-11-03 PDBE ONL "Modify PCM" 2024-09-27 PDBE # loop_ _pdbx_chem_comp_pcm.pcm_id _pdbx_chem_comp_pcm.comp_id _pdbx_chem_comp_pcm.modified_residue_id _pdbx_chem_comp_pcm.type _pdbx_chem_comp_pcm.category _pdbx_chem_comp_pcm.position _pdbx_chem_comp_pcm.polypeptide_position _pdbx_chem_comp_pcm.comp_id_linking_atom _pdbx_chem_comp_pcm.modified_residue_id_linking_atom _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession 1 ONL LEU Norleucine "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 2 ONL LEU Oxidation "Named protein modification" "Amino-acid side chain" "Any position" ? ? ? ? 3 ONL CYS None "Covalent chemical modification" "Amino-acid side chain" "Any position" CE SG ? ? 4 ONL SER None "Covalent chemical modification" "Amino-acid side chain" "Any position" CE OG ? ? #