data_ONN # _chem_comp.id ONN _chem_comp.name "2-[2-[[[(4~{R},8~{S},11~{S})-11-azanyl-8-[(4-hydroxyphenyl)methyl]-6,10-bis(oxidanylidene)-1,2-dithia-5,9-diazacyclotridec-4-yl]carbonylamino]methyl]phenyl]ethanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H32 N4 O6 S2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-21 _chem_comp.pdbx_modified_date 2020-07-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 560.685 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ONN _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YDX _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ONN C14 C1 C 0 1 N N R 29.089 0.765 56.763 -0.362 0.788 0.408 C14 ONN 1 ONN C11 C2 C 0 1 N N N 27.505 -0.624 58.352 1.995 0.583 0.855 C11 ONN 2 ONN C2 C3 C 0 1 Y N N 27.362 -4.469 59.745 4.838 1.369 -0.450 C2 ONN 3 ONN C4 C4 C 0 1 Y N N 27.004 -6.100 57.936 4.476 3.650 -1.082 C4 ONN 4 ONN C5 C5 C 0 1 Y N N 25.554 -6.184 58.397 5.723 3.987 -0.579 C5 ONN 5 ONN C6 C6 C 0 1 Y N N 25.137 -5.465 59.417 6.529 3.008 -0.015 C6 ONN 6 ONN C1 C7 C 0 1 N N N 28.334 -3.551 60.473 4.353 -0.056 -0.374 C1 ONN 7 ONN C10 C8 C 0 1 N N N 27.512 -1.372 59.673 3.167 0.388 1.782 C10 ONN 8 ONN C15 C9 C 0 1 N N N 30.489 0.309 56.330 -0.291 -0.315 -0.651 C15 ONN 9 ONN C16 C10 C 0 1 N N N 28.053 0.561 55.649 -1.689 0.723 1.120 C16 ONN 10 ONN C19 C11 C 0 1 N N N 28.105 -2.037 55.566 -4.074 1.204 1.247 C19 ONN 11 ONN C20 C12 C 0 1 Y N N 28.896 -2.723 54.469 -5.129 1.878 0.408 C20 ONN 12 ONN C21 C13 C 0 1 Y N N 28.335 -3.833 53.847 -5.704 1.203 -0.652 C21 ONN 13 ONN C22 C14 C 0 1 Y N N 29.070 -4.459 52.852 -6.671 1.822 -1.422 C22 ONN 14 ONN C23 C15 C 0 1 Y N N 30.318 -3.986 52.491 -7.062 3.116 -1.133 C23 ONN 15 ONN C24 C16 C 0 1 Y N N 30.874 -2.883 53.104 -6.486 3.791 -0.072 C24 ONN 16 ONN C25 C17 C 0 1 Y N N 30.155 -2.256 54.100 -5.524 3.170 0.701 C25 ONN 17 ONN C26 C18 C 0 1 N N N 26.946 -4.319 54.274 -5.278 -0.207 -0.968 C26 ONN 18 ONN C27 C19 C 0 1 N N N 26.093 -4.723 53.062 -6.061 -1.172 -0.116 C27 ONN 19 ONN C3 C20 C 0 1 Y N N 27.844 -5.305 58.561 4.036 2.342 -1.017 C3 ONN 20 ONN C31 C21 C 0 1 N N N 30.890 -1.963 60.953 3.617 -2.515 -0.030 C31 ONN 21 ONN C32 C22 C 0 1 N N S 32.147 -1.101 61.067 3.185 -3.959 -0.037 C32 ONN 22 ONN C35 C23 C 0 1 N N N 31.954 0.251 60.379 2.130 -4.169 -1.126 C35 ONN 23 ONN C36 C24 C 0 1 N N N 32.860 0.374 59.158 0.749 -4.297 -0.480 C36 ONN 24 ONN C7 C25 C 0 1 Y N N 26.111 -4.542 60.144 6.082 1.703 0.053 C7 ONN 25 ONN C9 C26 C 0 1 N N S 28.662 -2.372 59.569 4.226 -0.474 1.092 C9 ONN 26 ONN N13 N1 N 0 1 N N N 28.764 0.007 57.963 0.734 0.582 1.380 N13 ONN 27 ONN N18 N2 N 0 1 N N N 27.630 -0.737 55.125 -2.785 1.266 0.554 N18 ONN 28 ONN N30 N3 N 0 1 N N N 29.926 -1.697 59.878 3.808 -1.892 1.170 N30 ONN 29 ONN N34 N4 N 0 1 N N N 33.255 -1.834 60.483 2.614 -4.306 1.271 N34 ONN 30 ONN O12 O1 O 0 1 N N N 26.512 -0.607 57.709 2.168 0.738 -0.335 O12 ONN 31 ONN O17 O2 O 0 1 N N N 27.547 1.523 55.180 -1.770 0.183 2.203 O17 ONN 32 ONN O28 O3 O 0 1 N N N 25.087 -5.457 53.230 -5.848 -2.493 -0.227 O28 ONN 33 ONN O29 O4 O 0 1 N N N 26.368 -4.344 51.891 -6.882 -0.757 0.668 O29 ONN 34 ONN O33 O5 O 0 1 N N N 30.769 -2.819 61.762 3.793 -1.918 -1.071 O33 ONN 35 ONN O8 O6 O 0 1 N N N 24.662 -7.029 57.732 6.159 5.273 -0.643 O8 ONN 36 ONN S37 S1 S 0 1 N N N 32.460 1.933 58.322 -0.435 -3.252 -1.372 S37 ONN 37 ONN S38 S2 S 0 1 N N N 31.735 1.628 56.371 -0.965 -1.854 0.031 S38 ONN 38 ONN H1 H1 H 0 1 N N N 29.132 1.837 57.006 -0.251 1.761 -0.070 H1 ONN 39 ONN H2 H2 H 0 1 N N N 27.341 -6.692 57.098 3.847 4.410 -1.522 H2 ONN 40 ONN H3 H3 H 0 1 N N N 24.108 -5.528 59.739 7.501 3.268 0.378 H3 ONN 41 ONN H4 H4 H 0 1 N N N 29.256 -4.102 60.711 3.380 -0.135 -0.860 H4 ONN 42 ONN H5 H5 H 0 1 N N N 27.873 -3.187 61.403 5.065 -0.709 -0.878 H5 ONN 43 ONN H6 H6 H 0 1 N N N 27.682 -0.676 60.508 3.596 1.357 2.035 H6 ONN 44 ONN H7 H7 H 0 1 N N N 26.557 -1.898 59.822 2.831 -0.109 2.693 H7 ONN 45 ONN H8 H8 H 0 1 N N N 30.426 -0.076 55.302 -0.873 -0.019 -1.523 H8 ONN 46 ONN H9 H9 H 0 1 N N N 30.815 -0.497 57.004 0.747 -0.471 -0.943 H9 ONN 47 ONN H10 H10 H 0 1 N N N 27.242 -2.664 55.834 -3.995 1.712 2.208 H10 ONN 48 ONN H11 H11 H 0 1 N N N 28.750 -1.905 56.447 -4.350 0.162 1.408 H11 ONN 49 ONN H12 H12 H 0 1 N N N 28.663 -5.326 52.353 -7.121 1.294 -2.251 H12 ONN 50 ONN H13 H13 H 0 1 N N N 30.869 -4.491 51.712 -7.817 3.599 -1.735 H13 ONN 51 ONN H14 H14 H 0 1 N N N 31.848 -2.519 52.812 -6.792 4.802 0.154 H14 ONN 52 ONN H15 H15 H 0 1 N N N 30.573 -1.394 54.599 -5.074 3.697 1.529 H15 ONN 53 ONN H16 H16 H 0 1 N N N 26.435 -3.510 54.816 -5.467 -0.417 -2.021 H16 ONN 54 ONN H17 H17 H 0 1 N N N 27.060 -5.190 54.937 -4.214 -0.320 -0.760 H17 ONN 55 ONN H18 H18 H 0 1 N N N 28.873 -5.243 58.238 3.064 2.079 -1.409 H18 ONN 56 ONN H19 H19 H 0 1 N N N 32.349 -0.922 62.133 4.046 -4.595 -0.238 H19 ONN 57 ONN H20 H20 H 0 1 N N N 32.196 1.055 61.090 2.136 -3.318 -1.807 H20 ONN 58 ONN H21 H21 H 0 1 N N N 30.905 0.347 60.061 2.357 -5.080 -1.681 H21 ONN 59 ONN H22 H22 H 0 1 N N N 32.685 -0.471 58.476 0.422 -5.336 -0.524 H22 ONN 60 ONN H23 H23 H 0 1 N N N 33.914 0.379 59.473 0.804 -3.977 0.561 H23 ONN 61 ONN H24 H24 H 0 1 N N N 25.774 -3.951 60.983 6.705 0.942 0.499 H24 ONN 62 ONN H25 H25 H 0 1 N N N 28.701 -2.738 58.532 5.185 -0.348 1.595 H25 ONN 63 ONN H26 H26 H 0 1 N N N 29.513 -0.097 58.617 0.569 0.456 2.328 H26 ONN 64 ONN H27 H27 H 0 1 N N N 26.949 -0.729 54.393 -2.720 1.698 -0.312 H27 ONN 65 ONN H28 H28 H 0 1 N N N 30.167 -0.944 59.266 3.677 -2.347 2.016 H28 ONN 66 ONN H29 H29 H 0 1 N N N 33.358 -2.712 60.951 2.218 -5.234 1.258 H29 ONN 67 ONN H30 H30 H 0 1 N N N 33.075 -1.993 59.512 3.304 -4.218 2.002 H30 ONN 68 ONN H32 H32 H 0 1 N N N 24.669 -5.618 52.392 -6.374 -3.072 0.341 H32 ONN 69 ONN H33 H33 H 0 1 N N N 23.805 -6.968 58.137 5.922 5.807 0.128 H33 ONN 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ONN O29 C27 DOUB N N 1 ONN C23 C22 DOUB Y N 2 ONN C23 C24 SING Y N 3 ONN C22 C21 SING Y N 4 ONN C27 O28 SING N N 5 ONN C27 C26 SING N N 6 ONN C24 C25 DOUB Y N 7 ONN C21 C26 SING N N 8 ONN C21 C20 DOUB Y N 9 ONN C25 C20 SING Y N 10 ONN C20 C19 SING N N 11 ONN N18 C19 SING N N 12 ONN N18 C16 SING N N 13 ONN O17 C16 DOUB N N 14 ONN C16 C14 SING N N 15 ONN C15 S38 SING N N 16 ONN C15 C14 SING N N 17 ONN S38 S37 SING N N 18 ONN C14 N13 SING N N 19 ONN O12 C11 DOUB N N 20 ONN O8 C5 SING N N 21 ONN C4 C5 DOUB Y N 22 ONN C4 C3 SING Y N 23 ONN N13 C11 SING N N 24 ONN S37 C36 SING N N 25 ONN C11 C10 SING N N 26 ONN C5 C6 SING Y N 27 ONN C3 C2 DOUB Y N 28 ONN C36 C35 SING N N 29 ONN C6 C7 DOUB Y N 30 ONN C9 C10 SING N N 31 ONN C9 N30 SING N N 32 ONN C9 C1 SING N N 33 ONN C2 C7 SING Y N 34 ONN C2 C1 SING N N 35 ONN N30 C31 SING N N 36 ONN C35 C32 SING N N 37 ONN N34 C32 SING N N 38 ONN C31 C32 SING N N 39 ONN C31 O33 DOUB N N 40 ONN C14 H1 SING N N 41 ONN C4 H2 SING N N 42 ONN C6 H3 SING N N 43 ONN C1 H4 SING N N 44 ONN C1 H5 SING N N 45 ONN C10 H6 SING N N 46 ONN C10 H7 SING N N 47 ONN C15 H8 SING N N 48 ONN C15 H9 SING N N 49 ONN C19 H10 SING N N 50 ONN C19 H11 SING N N 51 ONN C22 H12 SING N N 52 ONN C23 H13 SING N N 53 ONN C24 H14 SING N N 54 ONN C25 H15 SING N N 55 ONN C26 H16 SING N N 56 ONN C26 H17 SING N N 57 ONN C3 H18 SING N N 58 ONN C32 H19 SING N N 59 ONN C35 H20 SING N N 60 ONN C35 H21 SING N N 61 ONN C36 H22 SING N N 62 ONN C36 H23 SING N N 63 ONN C7 H24 SING N N 64 ONN C9 H25 SING N N 65 ONN N13 H26 SING N N 66 ONN N18 H27 SING N N 67 ONN N30 H28 SING N N 68 ONN N34 H29 SING N N 69 ONN N34 H30 SING N N 70 ONN O28 H32 SING N N 71 ONN O8 H33 SING N N 72 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ONN InChI InChI 1.03 "InChI=1S/C26H32N4O6S2/c27-21-9-10-37-38-15-22(26(36)28-14-18-4-2-1-3-17(18)12-24(33)34)30-23(32)13-19(29-25(21)35)11-16-5-7-20(31)8-6-16/h1-8,19,21-22,31H,9-15,27H2,(H,28,36)(H,29,35)(H,30,32)(H,33,34)/t19-,21-,22-/m0/s1" ONN InChIKey InChI 1.03 VZYRMNZEFCZSER-BVSLBCMMSA-N ONN SMILES_CANONICAL CACTVS 3.385 "N[C@H]1CCSSC[C@H](NC(=O)C[C@H](Cc2ccc(O)cc2)NC1=O)C(=O)NCc3ccccc3CC(O)=O" ONN SMILES CACTVS 3.385 "N[CH]1CCSSC[CH](NC(=O)C[CH](Cc2ccc(O)cc2)NC1=O)C(=O)NCc3ccccc3CC(O)=O" ONN SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CC(=O)O)CNC(=O)[C@@H]2CSSCC[C@@H](C(=O)N[C@H](CC(=O)N2)Cc3ccc(cc3)O)N" ONN SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(c(c1)CC(=O)O)CNC(=O)C2CSSCCC(C(=O)NC(CC(=O)N2)Cc3ccc(cc3)O)N" # _pdbx_chem_comp_identifier.comp_id ONN _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "2-[2-[[[(4~{R},8~{S},11~{S})-11-azanyl-8-[(4-hydroxyphenyl)methyl]-6,10-bis(oxidanylidene)-1,2-dithia-5,9-diazacyclotridec-4-yl]carbonylamino]methyl]phenyl]ethanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ONN "Create component" 2020-03-21 PDBE ONN "Initial release" 2020-07-22 RCSB ##