data_ONX # _chem_comp.id ONX _chem_comp.name "N-[(2R,3S)-3-oxidanylicos-4-en-2-yl]icosanamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C40 H79 N O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2015-09-30 _chem_comp.pdbx_modified_date 2016-03-18 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 606.061 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 5DVG _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ONX CBD C1 C 0 1 N N N -3.597 -31.982 -33.921 -12.354 0.845 -0.071 CBD ONX 1 ONX CAQ C2 C 0 1 N N N -4.811 -30.521 -29.896 8.170 -1.115 -0.196 CAQ ONX 2 ONX CBC C3 C 0 1 N N N -3.574 -30.584 -34.521 -10.904 0.562 -0.468 CBC ONX 3 ONX CAP C4 C 0 1 N N N -5.106 -29.046 -30.136 6.727 -0.931 0.279 CAP ONX 4 ONX CBB C5 C 0 1 N N N -3.035 -29.554 -33.539 -10.582 -0.911 -0.210 CBB ONX 5 ONX CAO C6 C 0 1 N N N -4.584 -28.206 -28.986 5.885 -2.126 -0.173 CAO ONX 6 ONX CBA C7 C 0 1 N N N -2.571 -28.288 -34.253 -9.132 -1.194 -0.607 CBA ONX 7 ONX CAN C8 C 0 1 N N N -3.741 -27.033 -29.450 4.442 -1.942 0.302 CAN ONX 8 ONX CAZ C9 C 0 1 N N N -1.770 -27.402 -33.307 -8.811 -2.667 -0.349 CAZ ONX 9 ONX CAM C10 C 0 1 N N N -2.581 -26.880 -28.494 3.600 -3.137 -0.150 CAM ONX 10 ONX CAY C11 C 0 1 N N N -0.265 -27.639 -33.298 -7.360 -2.950 -0.746 CAY ONX 11 ONX CAL C12 C 0 1 N N N -1.647 -25.781 -28.950 2.157 -2.953 0.325 CAL ONX 12 ONX CAH C13 C 0 1 N N N 0.431 -26.405 -32.718 -7.039 -4.423 -0.488 CAH ONX 13 ONX CAF C14 C 0 1 N N N 2.130 -25.486 -31.096 -4.785 -5.233 -0.011 CAF ONX 14 ONX OAJ O1 O 0 1 N N N 0.588 -25.004 -26.369 -0.415 -2.979 0.973 OAJ ONX 15 ONX CAB C15 C 0 1 N N R 2.344 -25.283 -28.503 -2.415 -4.725 0.511 CAB ONX 16 ONX CAA C16 C 0 1 N N N 3.039 -23.991 -28.284 -2.549 -5.240 1.946 CAA ONX 17 ONX CAE C17 C 0 1 N N N 0.160 -24.963 -27.515 -0.106 -3.966 0.341 CAE ONX 18 ONX CAG C18 C 0 1 N N N 1.876 -26.559 -32.185 -5.610 -4.702 -0.879 CAG ONX 19 ONX CBE C19 C 0 1 N N N -4.796 -32.795 -34.413 -12.676 2.319 -0.330 CBE ONX 20 ONX CAK C20 C 0 1 N N N -1.302 -24.818 -27.819 1.315 -4.147 -0.127 CAK ONX 21 ONX CAR C21 C 0 1 N N N -5.926 -31.247 -29.146 9.012 0.080 0.256 CAR ONX 22 ONX NAC N1 N 0 1 N N N 0.922 -25.066 -28.588 -1.033 -4.902 0.056 NAC ONX 23 ONX CAD C22 C 0 1 N N S 2.664 -26.037 -29.802 -3.357 -5.512 -0.403 CAD ONX 24 ONX OAI O2 O 0 1 N N N 2.139 -27.370 -29.689 -3.091 -6.910 -0.272 OAI ONX 25 ONX H1 H1 H 0 1 N N N -2.672 -32.506 -34.204 -13.022 0.218 -0.662 H1 ONX 26 ONX H2 H2 H 0 1 N N N -3.650 -31.898 -32.826 -12.490 0.624 0.988 H2 ONX 27 ONX H3 H3 H 0 1 N N N -4.669 -31.011 -30.870 8.579 -2.030 0.231 H3 ONX 28 ONX H4 H4 H 0 1 N N N -3.885 -30.600 -29.307 8.188 -1.182 -1.284 H4 ONX 29 ONX H5 H5 H 0 1 N N N -2.934 -30.591 -35.416 -10.768 0.784 -1.527 H5 ONX 30 ONX H6 H6 H 0 1 N N N -4.599 -30.302 -34.805 -10.236 1.189 0.123 H6 ONX 31 ONX H7 H7 H 0 1 N N N -4.618 -28.726 -31.069 6.708 -0.864 1.367 H7 ONX 32 ONX H8 H8 H 0 1 N N N -6.193 -28.904 -30.224 6.318 -0.016 -0.148 H8 ONX 33 ONX H9 H9 H 0 1 N N N -3.830 -29.291 -32.825 -10.719 -1.132 0.849 H9 ONX 34 ONX H10 H10 H 0 1 N N N -2.184 -29.990 -32.995 -11.250 -1.538 -0.801 H10 ONX 35 ONX H11 H11 H 0 1 N N N -5.441 -27.819 -28.416 5.903 -2.193 -1.261 H11 ONX 36 ONX H12 H12 H 0 1 N N N -3.969 -28.845 -28.335 6.294 -3.041 0.254 H12 ONX 37 ONX H13 H13 H 0 1 N N N -1.939 -28.567 -35.109 -8.996 -0.973 -1.666 H13 ONX 38 ONX H14 H14 H 0 1 N N N -3.450 -27.732 -34.611 -8.465 -0.567 -0.016 H14 ONX 39 ONX H15 H15 H 0 1 N N N -3.364 -27.224 -30.466 4.423 -1.875 1.390 H15 ONX 40 ONX H16 H16 H 0 1 N N N -4.347 -26.115 -29.450 4.033 -1.026 -0.125 H16 ONX 41 ONX H17 H17 H 0 1 N N N -1.946 -26.355 -33.594 -8.947 -2.888 0.710 H17 ONX 42 ONX H18 H18 H 0 1 N N N -2.145 -27.570 -32.287 -9.478 -3.294 -0.940 H18 ONX 43 ONX H19 H19 H 0 1 N N N -2.968 -26.632 -27.495 3.619 -3.203 -1.238 H19 ONX 44 ONX H20 H20 H 0 1 N N N -2.026 -27.828 -28.447 4.009 -4.052 0.277 H20 ONX 45 ONX H21 H21 H 0 1 N N N -0.034 -28.518 -32.678 -7.224 -2.729 -1.805 H21 ONX 46 ONX H22 H22 H 0 1 N N N 0.087 -27.812 -34.326 -6.693 -2.323 -0.155 H22 ONX 47 ONX H23 H23 H 0 1 N N N -0.718 -26.237 -29.324 2.139 -2.886 1.413 H23 ONX 48 ONX H24 H24 H 0 1 N N N -2.131 -25.217 -29.761 1.748 -2.037 -0.102 H24 ONX 49 ONX H25 H25 H 0 1 N N N 0.456 -25.643 -33.511 -7.175 -4.644 0.571 H25 ONX 50 ONX H26 H26 H 0 1 N N N -0.187 -26.045 -31.883 -7.706 -5.050 -1.079 H26 ONX 51 ONX H27 H27 H 0 1 N N N 1.940 -24.434 -31.252 -5.128 -5.472 0.984 H27 ONX 52 ONX H29 H29 H 0 1 N N N 2.562 -25.951 -27.657 -2.676 -3.668 0.478 H29 ONX 53 ONX H30 H30 H 0 1 N N N 2.720 -23.561 -27.323 -2.288 -6.297 1.978 H30 ONX 54 ONX H31 H31 H 0 1 N N N 4.126 -24.158 -28.268 -1.878 -4.679 2.597 H31 ONX 55 ONX H32 H32 H 0 1 N N N 2.786 -23.296 -29.098 -3.577 -5.109 2.284 H32 ONX 56 ONX H33 H33 H 0 1 N N N 2.592 -27.296 -32.518 -5.267 -4.463 -1.875 H33 ONX 57 ONX H35 H35 H 0 1 N N N -5.300 -32.570 -35.364 -12.008 2.945 0.261 H35 ONX 58 ONX H36 H36 H 0 1 N N N -4.906 -33.865 -34.185 -12.539 2.540 -1.388 H36 ONX 59 ONX H38 H38 H 0 1 N N N -1.518 -23.785 -28.130 1.334 -4.214 -1.215 H38 ONX 60 ONX H39 H39 H 0 1 N N N -1.895 -25.064 -26.926 1.724 -5.063 0.300 H39 ONX 61 ONX H40 H40 H 0 1 N N N -6.907 -31.251 -29.644 8.602 0.995 -0.171 H40 ONX 62 ONX H41 H41 H 0 1 N N N -5.683 -32.265 -28.806 8.993 0.147 1.344 H41 ONX 63 ONX H43 H43 H 0 1 N N N 0.498 -24.991 -29.491 -0.786 -5.691 -0.450 H43 ONX 64 ONX H44 H44 H 0 1 N N N 3.759 -26.096 -29.888 -3.198 -5.207 -1.437 H44 ONX 65 ONX H45 H45 H 0 1 N N N 2.449 -27.765 -28.883 -3.213 -7.251 0.625 H45 ONX 66 ONX C1 C23 C 0 1 N N N ? ? ? -14.126 2.601 0.068 C1 ONX 67 ONX C2 C24 C 0 1 N N N ? ? ? -14.447 4.075 -0.191 C2 ONX 68 ONX C3 C25 C 0 1 N N N ? ? ? -15.898 4.358 0.207 C3 ONX 69 ONX C4 C26 C 0 1 N N N ? ? ? -16.219 5.831 -0.052 C4 ONX 70 ONX C5 C27 C 0 1 N N N ? ? ? -17.669 6.114 0.345 C5 ONX 71 ONX C6 C28 C 0 1 N N N ? ? ? 10.454 -0.104 -0.219 C6 ONX 72 ONX C7 C29 C 0 1 N N N ? ? ? 11.296 1.090 0.233 C7 ONX 73 ONX C8 C30 C 0 1 N N N ? ? ? 12.739 0.906 -0.242 C8 ONX 74 ONX C9 C31 C 0 1 N N N ? ? ? 13.581 2.101 0.210 C9 ONX 75 ONX C10 C32 C 0 1 N N N ? ? ? 15.024 1.917 -0.265 C10 ONX 76 ONX C11 C33 C 0 1 N N N ? ? ? 15.866 3.112 0.187 C11 ONX 77 ONX C12 C34 C 0 1 N N N ? ? ? 17.309 2.928 -0.288 C12 ONX 78 ONX C13 C35 C 0 1 N N N ? ? ? 18.151 4.123 0.164 C13 ONX 79 ONX C14 C36 C 0 1 N N N ? ? ? 19.593 3.939 -0.310 C14 ONX 80 ONX C15 C37 C 0 1 N N N ? ? ? 20.435 5.134 0.142 C15 ONX 81 ONX C16 C38 C 0 1 N N N ? ? ? 21.878 4.950 -0.333 C16 ONX 82 ONX H37 H37 H 0 1 N N N ? ? ? -14.793 1.975 -0.523 H37 ONX 83 ONX H42 H42 H 0 1 N N N ? ? ? -14.262 2.380 1.126 H42 ONX 84 ONX H46 H46 H 0 1 N N N ? ? ? -13.780 4.702 0.400 H46 ONX 85 ONX H47 H47 H 0 1 N N N ? ? ? -14.311 4.296 -1.249 H47 ONX 86 ONX H48 H48 H 0 1 N N N ? ? ? -16.565 3.731 -0.384 H48 ONX 87 ONX H49 H49 H 0 1 N N N ? ? ? -16.034 4.136 1.265 H49 ONX 88 ONX H50 H50 H 0 1 N N N ? ? ? -15.552 6.458 0.539 H50 ONX 89 ONX H51 H51 H 0 1 N N N ? ? ? -16.083 6.052 -1.111 H51 ONX 90 ONX H52 H52 H 0 1 N N N ? ? ? -18.337 5.487 -0.246 H52 ONX 91 ONX H53 H53 H 0 1 N N N ? ? ? -17.806 5.892 1.404 H53 ONX 92 ONX H55 H55 H 0 1 N N N ? ? ? 10.864 -1.020 0.208 H55 ONX 93 ONX H56 H56 H 0 1 N N N ? ? ? 10.473 -0.171 -1.307 H56 ONX 94 ONX H57 H57 H 0 1 N N N ? ? ? 10.887 2.006 -0.194 H57 ONX 95 ONX H58 H58 H 0 1 N N N ? ? ? 11.278 1.157 1.321 H58 ONX 96 ONX H59 H59 H 0 1 N N N ? ? ? 13.148 -0.009 0.186 H59 ONX 97 ONX H60 H60 H 0 1 N N N ? ? ? 12.758 0.840 -1.329 H60 ONX 98 ONX H61 H61 H 0 1 N N N ? ? ? 13.172 3.017 -0.217 H61 ONX 99 ONX H62 H62 H 0 1 N N N ? ? ? 13.562 2.168 1.298 H62 ONX 100 ONX H63 H63 H 0 1 N N N ? ? ? 15.433 1.002 0.163 H63 ONX 101 ONX H64 H64 H 0 1 N N N ? ? ? 15.042 1.850 -1.352 H64 ONX 102 ONX H65 H65 H 0 1 N N N ? ? ? 15.457 4.028 -0.240 H65 ONX 103 ONX H66 H66 H 0 1 N N N ? ? ? 15.847 3.179 1.275 H66 ONX 104 ONX H67 H67 H 0 1 N N N ? ? ? 17.718 2.013 0.140 H67 ONX 105 ONX H68 H68 H 0 1 N N N ? ? ? 17.327 2.861 -1.375 H68 ONX 106 ONX H69 H69 H 0 1 N N N ? ? ? 17.742 5.038 -0.263 H69 ONX 107 ONX H70 H70 H 0 1 N N N ? ? ? 18.132 4.190 1.252 H70 ONX 108 ONX H71 H71 H 0 1 N N N ? ? ? 20.003 3.023 0.117 H71 ONX 109 ONX H72 H72 H 0 1 N N N ? ? ? 19.612 3.872 -1.398 H72 ONX 110 ONX H73 H73 H 0 1 N N N ? ? ? 20.026 6.049 -0.286 H73 ONX 111 ONX H74 H74 H 0 1 N N N ? ? ? 20.417 5.201 1.229 H74 ONX 112 ONX H75 H75 H 0 1 N N N ? ? ? 22.478 5.801 -0.011 H75 ONX 113 ONX H76 H76 H 0 1 N N N ? ? ? 22.288 4.034 0.094 H76 ONX 114 ONX H77 H77 H 0 1 N N N ? ? ? 21.897 4.883 -1.421 H77 ONX 115 ONX C17 C39 C 0 1 N N N ? ? ? -17.991 7.587 0.087 C17 ONX 116 ONX C18 C40 C 0 1 N N N ? ? ? -19.441 7.870 0.484 C18 ONX 117 ONX H28 H28 H 0 1 N N N ? ? ? -17.323 8.214 0.678 H28 ONX 118 ONX H34 H34 H 0 1 N N N ? ? ? -17.854 7.808 -0.972 H34 ONX 119 ONX H54 H54 H 0 1 N N N ? ? ? -20.109 7.243 -0.107 H54 ONX 120 ONX H78 H78 H 0 1 N N N ? ? ? -19.577 7.649 1.543 H78 ONX 121 ONX H79 H79 H 0 1 N N N ? ? ? -19.670 8.920 0.300 H79 ONX 122 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ONX CBC CBD SING N N 1 ONX CBC CBB SING N N 2 ONX CBE CBD SING N N 3 ONX CBA CBB SING N N 4 ONX CBA CAZ SING N N 5 ONX CAZ CAY SING N N 6 ONX CAY CAH SING N N 7 ONX CAH CAG SING N N 8 ONX CAG CAF DOUB N E 9 ONX CAF CAD SING N N 10 ONX CAP CAQ SING N N 11 ONX CAP CAO SING N N 12 ONX CAQ CAR SING N N 13 ONX CAD OAI SING N N 14 ONX CAD CAB SING N N 15 ONX CAN CAO SING N N 16 ONX CAN CAM SING N N 17 ONX CAL CAM SING N N 18 ONX CAL CAK SING N N 19 ONX NAC CAB SING N N 20 ONX NAC CAE SING N N 21 ONX CAB CAA SING N N 22 ONX CAK CAE SING N N 23 ONX CAE OAJ DOUB N N 24 ONX CBD H1 SING N N 25 ONX CBD H2 SING N N 26 ONX CAQ H3 SING N N 27 ONX CAQ H4 SING N N 28 ONX CBC H5 SING N N 29 ONX CBC H6 SING N N 30 ONX CAP H7 SING N N 31 ONX CAP H8 SING N N 32 ONX CBB H9 SING N N 33 ONX CBB H10 SING N N 34 ONX CAO H11 SING N N 35 ONX CAO H12 SING N N 36 ONX CBA H13 SING N N 37 ONX CBA H14 SING N N 38 ONX CAN H15 SING N N 39 ONX CAN H16 SING N N 40 ONX CAZ H17 SING N N 41 ONX CAZ H18 SING N N 42 ONX CAM H19 SING N N 43 ONX CAM H20 SING N N 44 ONX CAY H21 SING N N 45 ONX CAY H22 SING N N 46 ONX CAL H23 SING N N 47 ONX CAL H24 SING N N 48 ONX CAH H25 SING N N 49 ONX CAH H26 SING N N 50 ONX CAF H27 SING N N 51 ONX CAB H29 SING N N 52 ONX CAA H30 SING N N 53 ONX CAA H31 SING N N 54 ONX CAA H32 SING N N 55 ONX CAG H33 SING N N 56 ONX CBE H35 SING N N 57 ONX CBE H36 SING N N 58 ONX CAK H38 SING N N 59 ONX CAK H39 SING N N 60 ONX CAR H40 SING N N 61 ONX CAR H41 SING N N 62 ONX NAC H43 SING N N 63 ONX CAD H44 SING N N 64 ONX OAI H45 SING N N 65 ONX CBE C1 SING N N 66 ONX C1 C2 SING N N 67 ONX C2 C3 SING N N 68 ONX C3 C4 SING N N 69 ONX C4 C5 SING N N 70 ONX CAR C6 SING N N 71 ONX C6 C7 SING N N 72 ONX C7 C8 SING N N 73 ONX C8 C9 SING N N 74 ONX C9 C10 SING N N 75 ONX C10 C11 SING N N 76 ONX C11 C12 SING N N 77 ONX C12 C13 SING N N 78 ONX C13 C14 SING N N 79 ONX C14 C15 SING N N 80 ONX C15 C16 SING N N 81 ONX C1 H37 SING N N 82 ONX C1 H42 SING N N 83 ONX C2 H46 SING N N 84 ONX C2 H47 SING N N 85 ONX C3 H48 SING N N 86 ONX C3 H49 SING N N 87 ONX C4 H50 SING N N 88 ONX C4 H51 SING N N 89 ONX C5 H52 SING N N 90 ONX C5 H53 SING N N 91 ONX C6 H55 SING N N 92 ONX C6 H56 SING N N 93 ONX C7 H57 SING N N 94 ONX C7 H58 SING N N 95 ONX C8 H59 SING N N 96 ONX C8 H60 SING N N 97 ONX C9 H61 SING N N 98 ONX C9 H62 SING N N 99 ONX C10 H63 SING N N 100 ONX C10 H64 SING N N 101 ONX C11 H65 SING N N 102 ONX C11 H66 SING N N 103 ONX C12 H67 SING N N 104 ONX C12 H68 SING N N 105 ONX C13 H69 SING N N 106 ONX C13 H70 SING N N 107 ONX C14 H71 SING N N 108 ONX C14 H72 SING N N 109 ONX C15 H73 SING N N 110 ONX C15 H74 SING N N 111 ONX C16 H75 SING N N 112 ONX C16 H76 SING N N 113 ONX C16 H77 SING N N 114 ONX C5 C17 SING N N 115 ONX C17 C18 SING N N 116 ONX C17 H28 SING N N 117 ONX C17 H34 SING N N 118 ONX C18 H54 SING N N 119 ONX C18 H78 SING N N 120 ONX C18 H79 SING N N 121 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ONX InChI InChI 1.03 "InChI=1S/C40H79NO2/c1-4-6-8-10-12-14-16-18-20-21-23-25-27-29-31-33-35-37-40(43)41-38(3)39(42)36-34-32-30-28-26-24-22-19-17-15-13-11-9-7-5-2/h34,36,38-39,42H,4-33,35,37H2,1-3H3,(H,41,43)/b36-34+/t38-,39+/m1/s1" ONX InChIKey InChI 1.03 OIYVZQWNTPVTQS-XWHBQUFFSA-N ONX SMILES_CANONICAL CACTVS 3.385 "CCCCCCCCCCCCCCCCCCCC(=O)N[C@H](C)[C@@H](O)/C=C/CCCCCCCCCCCCCCC" ONX SMILES CACTVS 3.385 "CCCCCCCCCCCCCCCCCCCC(=O)N[CH](C)[CH](O)C=CCCCCCCCCCCCCCCC" ONX SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "CCCCCCCCCCCCCCCCCCCC(=O)N[C@H](C)[C@H](C=CCCCCCCCCCCCCCCC)O" ONX SMILES "OpenEye OEToolkits" 1.9.2 "CCCCCCCCCCCCCCCCCCCC(=O)NC(C)C(C=CCCCCCCCCCCCCCCC)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ONX "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "N-[(2R,3S)-3-oxidanylicos-4-en-2-yl]icosanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ONX "Create component" 2015-09-30 PDBJ ONX "Modify name" 2015-10-14 PDBJ ONX "Initial release" 2016-03-23 RCSB #