data_OO2 # _chem_comp.id OO2 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-(cyclopentylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 Cl N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-23 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.810 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OO2 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YE1 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OO2 C1 C2 C 0 1 Y N N 24.970 31.892 0.833 -3.497 -1.736 0.681 C1 OO2 1 OO2 C2 C4 C 0 1 Y N N 23.864 30.079 1.407 -1.481 -0.696 0.304 C2 OO2 2 OO2 N1 N1 N 0 1 Y N N 25.825 31.269 0.023 -4.176 -0.614 0.512 N1 OO2 3 OO2 N2 N3 N 0 1 Y N N 23.958 31.407 1.540 -2.184 -1.789 0.584 N2 OO2 4 OO2 C3 C6 C 0 1 Y N N 25.702 29.924 -0.080 -3.557 0.528 0.229 C3 OO2 5 OO2 O1 O3* O 0 1 N N N 18.291 29.491 2.086 3.058 -3.644 -1.259 O1 OO2 6 OO2 C4 C3* C 0 1 N N S 19.661 29.120 2.132 2.697 -2.262 -1.211 C4 OO2 7 OO2 C5 C2* C 0 1 N N R 20.677 30.264 2.166 1.164 -2.106 -1.102 C5 OO2 8 OO2 O2 O2* O 0 1 N N N 20.249 31.434 2.845 0.531 -3.387 -1.079 O2 OO2 9 OO2 C6 C4* C 0 1 N N R 19.951 28.385 3.428 3.235 -1.608 0.081 C6 OO2 10 OO2 C7 C5* C 0 1 N N N 19.516 26.945 3.401 4.538 -0.859 -0.204 C7 OO2 11 OO2 O3 O5* O 0 1 N N N 19.727 26.393 4.670 5.078 -0.360 1.021 O3 OO2 12 OO2 C8 C08 C 0 1 N N N 19.818 24.975 4.612 6.303 0.359 0.867 C8 OO2 13 OO2 P1 P09 P 0 1 N N N 21.525 24.423 4.468 5.956 2.006 0.164 P1 OO2 14 OO2 O4 O10 O 0 1 N N N 21.826 23.676 3.214 5.058 2.751 1.074 O4 OO2 15 OO2 O5 O11 O 0 1 N N N 21.760 23.570 5.734 7.336 2.816 -0.010 O5 OO2 16 OO2 O6 O12 O 0 1 N N N 22.327 25.729 4.559 5.247 1.838 -1.272 O6 OO2 17 OO2 O7 O4* O 0 1 N N N 21.382 28.477 3.591 2.201 -0.683 0.483 O7 OO2 18 OO2 C9 C1* C 0 1 N N R 21.863 29.622 2.896 0.956 -1.375 0.243 C9 OO2 19 OO2 N3 N9 N 0 1 Y N N 22.957 29.237 2.006 -0.148 -0.418 0.138 N3 OO2 20 OO2 C10 C8 C 0 1 Y N N 23.272 27.980 1.565 -0.039 0.912 -0.142 C10 OO2 21 OO2 N4 N7 N 0 1 Y N N 24.291 27.945 0.740 -1.219 1.460 -0.159 N4 OO2 22 OO2 C11 C5 C 0 1 Y N N 24.677 29.272 0.638 -2.157 0.520 0.111 C11 OO2 23 OO2 CL1 CL22 CL 0 0 N N N 25.295 33.586 1.101 -4.368 -3.192 1.050 CL1 OO2 24 OO2 N5 N6 N 0 1 N N N 26.564 29.233 -0.866 -4.276 1.697 0.054 N5 OO2 25 OO2 C12 C26 C 0 1 N N N 27.401 29.753 -1.948 -5.736 1.686 0.180 C12 OO2 26 OO2 C13 C27 C 0 1 N N N 28.871 29.832 -1.549 -6.242 3.087 0.566 C13 OO2 27 OO2 C14 C28 C 0 1 N N N 29.393 28.425 -1.732 -7.178 3.546 -0.572 C14 OO2 28 OO2 C15 C29 C 0 1 N N N 28.647 27.912 -2.920 -7.653 2.226 -1.229 C15 OO2 29 OO2 C16 C30 C 0 1 N N N 27.431 28.810 -3.146 -6.381 1.342 -1.178 C16 OO2 30 OO2 H1 H1 H 0 1 N N N 17.751 28.709 2.068 2.695 -4.119 -2.020 H1 OO2 31 OO2 H2 H2 H 0 1 N N N 19.904 28.459 1.287 3.073 -1.740 -2.091 H2 OO2 32 OO2 H3 H3 H 0 1 N N N 20.980 30.504 1.136 0.782 -1.506 -1.928 H3 OO2 33 OO2 H4 H4 H 0 1 N N N 20.938 32.087 2.817 0.680 -3.913 -1.876 H4 OO2 34 OO2 H5 H5 H 0 1 N N N 19.443 28.902 4.255 3.390 -2.362 0.852 H5 OO2 35 OO2 H6 H6 H 0 1 N N N 18.448 26.885 3.143 5.254 -1.538 -0.667 H6 OO2 36 OO2 H7 H7 H 0 1 N N N 20.105 26.393 2.654 4.339 -0.026 -0.879 H7 OO2 37 OO2 H8 H8 H 0 1 N N N 19.253 24.617 3.739 6.783 0.473 1.839 H8 OO2 38 OO2 H9 H9 H 0 1 N N N 19.383 24.552 5.529 6.965 -0.189 0.196 H9 OO2 39 OO2 H10 H10 H 0 1 N N N 22.060 22.705 5.482 7.227 3.703 -0.380 H10 OO2 40 OO2 H11 H11 H 0 1 N N N 22.874 25.820 3.788 5.780 1.357 -1.920 H11 OO2 41 OO2 H12 H12 H 0 1 N N N 22.243 30.353 3.625 0.762 -2.094 1.039 H12 OO2 42 OO2 H13 H13 H 0 1 N N N 22.730 27.097 1.869 0.889 1.433 -0.324 H13 OO2 43 OO2 H14 H14 H 0 1 N N N 26.005 28.524 -1.295 -3.814 2.525 -0.153 H14 OO2 44 OO2 H15 H15 H 0 1 N N N 27.049 30.746 -2.266 -6.039 0.959 0.933 H15 OO2 45 OO2 H16 H16 H 0 1 N N N 29.413 30.535 -2.199 -6.793 3.039 1.506 H16 OO2 46 OO2 H17 H17 H 0 1 N N N 28.972 30.150 -0.501 -5.402 3.775 0.660 H17 OO2 47 OO2 H18 H18 H 0 1 N N N 29.182 27.812 -0.844 -8.027 4.098 -0.168 H18 OO2 48 OO2 H19 H19 H 0 1 N N N 30.476 28.432 -1.924 -6.633 4.158 -1.290 H19 OO2 49 OO2 H20 H20 H 0 1 N N N 28.318 26.879 -2.735 -8.460 1.775 -0.651 H20 OO2 50 OO2 H21 H21 H 0 1 N N N 29.297 27.936 -3.807 -7.966 2.398 -2.258 H21 OO2 51 OO2 H22 H22 H 0 1 N N N 27.540 29.378 -4.081 -5.707 1.597 -1.996 H22 OO2 52 OO2 H23 H23 H 0 1 N N N 26.510 28.209 -3.187 -6.649 0.286 -1.217 H23 OO2 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OO2 C16 C15 SING N N 1 OO2 C16 C12 SING N N 2 OO2 C15 C14 SING N N 3 OO2 C12 C13 SING N N 4 OO2 C12 N5 SING N N 5 OO2 C14 C13 SING N N 6 OO2 N5 C3 SING N N 7 OO2 C3 N1 DOUB Y N 8 OO2 C3 C11 SING Y N 9 OO2 N1 C1 SING Y N 10 OO2 C11 N4 SING Y N 11 OO2 C11 C2 DOUB Y N 12 OO2 N4 C10 DOUB Y N 13 OO2 C1 CL1 SING N N 14 OO2 C1 N2 DOUB Y N 15 OO2 C2 N2 SING Y N 16 OO2 C2 N3 SING Y N 17 OO2 C10 N3 SING Y N 18 OO2 N3 C9 SING N N 19 OO2 O1 C4 SING N N 20 OO2 C4 C5 SING N N 21 OO2 C4 C6 SING N N 22 OO2 C5 O2 SING N N 23 OO2 C5 C9 SING N N 24 OO2 C9 O7 SING N N 25 OO2 O4 P1 DOUB N N 26 OO2 C7 C6 SING N N 27 OO2 C7 O3 SING N N 28 OO2 C6 O7 SING N N 29 OO2 P1 O6 SING N N 30 OO2 P1 C8 SING N N 31 OO2 P1 O5 SING N N 32 OO2 C8 O3 SING N N 33 OO2 O1 H1 SING N N 34 OO2 C4 H2 SING N N 35 OO2 C5 H3 SING N N 36 OO2 O2 H4 SING N N 37 OO2 C6 H5 SING N N 38 OO2 C7 H6 SING N N 39 OO2 C7 H7 SING N N 40 OO2 C8 H8 SING N N 41 OO2 C8 H9 SING N N 42 OO2 O5 H10 SING N N 43 OO2 O6 H11 SING N N 44 OO2 C9 H12 SING N N 45 OO2 C10 H13 SING N N 46 OO2 N5 H14 SING N N 47 OO2 C12 H15 SING N N 48 OO2 C13 H16 SING N N 49 OO2 C13 H17 SING N N 50 OO2 C14 H18 SING N N 51 OO2 C14 H19 SING N N 52 OO2 C15 H20 SING N N 53 OO2 C15 H21 SING N N 54 OO2 C16 H22 SING N N 55 OO2 C16 H23 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OO2 InChI InChI 1.03 "InChI=1S/C16H23ClN5O7P/c17-16-20-13(19-8-3-1-2-4-8)10-14(21-16)22(6-18-10)15-12(24)11(23)9(29-15)5-28-7-30(25,26)27/h6,8-9,11-12,15,23-24H,1-5,7H2,(H,19,20,21)(H2,25,26,27)/t9-,11-,12-,15-/m1/s1" OO2 InChIKey InChI 1.03 ALDWNWOVOJESRL-SDBHATRESA-N OO2 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC[P](O)(O)=O)n2cnc3c(NC4CCCC4)nc(Cl)nc23" OO2 SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1COC[P](O)(O)=O)n2cnc3c(NC4CCCC4)nc(Cl)nc23" OO2 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1[C@H]3[C@@H]([C@@H]([C@H](O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4" OO2 SMILES "OpenEye OEToolkits" 2.0.7 "c1nc2c(nc(nc2n1C3C(C(C(O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4" # _pdbx_chem_comp_identifier.comp_id OO2 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[2-chloranyl-6-(cyclopentylamino)purin-9-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OO2 "Create component" 2020-03-23 PDBE OO2 "Initial release" 2021-01-20 RCSB ##