data_OO5 # _chem_comp.id OO5 _chem_comp.name "[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H23 Cl N5 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-23 _chem_comp.pdbx_modified_date 2021-01-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 463.810 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OO5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YE2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OO5 N1 N1 N 0 1 Y N N 26.574 31.444 0.108 -4.069 -0.612 0.599 N1 OO5 1 OO5 N2 N3 N 0 1 Y N N 24.805 31.412 1.729 -2.092 -1.816 0.617 N2 OO5 2 OO5 C1 C4 C 0 1 Y N N 24.559 30.156 1.332 -1.393 -0.759 0.206 C1 OO5 3 OO5 C2 C5 C 0 1 Y N N 25.236 29.466 0.335 -2.069 0.454 -0.025 C2 OO5 4 OO5 C3 C6 C 0 1 Y N N 26.269 30.199 -0.293 -3.461 0.495 0.189 C3 OO5 5 OO5 C4 C17 C 0 1 Y N N 24.620 28.191 0.304 -1.102 1.393 -0.446 C4 OO5 6 OO5 C5 C26 C 0 1 N N N 28.291 29.362 -1.468 -5.622 1.680 0.205 C5 OO5 7 OO5 C6 C28 C 0 1 N N N 28.065 27.616 -3.036 -7.627 2.145 -1.105 C6 OO5 8 OO5 O1 O3* O 0 1 N N N 19.094 28.781 1.858 2.941 -3.873 -0.942 O1 OO5 9 OO5 C7 C3* C 0 1 N N S 20.502 28.692 2.020 2.893 -2.457 -1.129 C7 OO5 10 OO5 C8 C2* C 0 1 N N R 21.244 30.022 2.003 1.438 -1.993 -1.379 C8 OO5 11 OO5 O2 O2* O 0 1 N N N 20.581 31.053 2.711 0.623 -3.082 -1.819 O2 OO5 12 OO5 C9 C4* C 0 1 N N R 20.886 28.127 3.380 3.306 -1.728 0.164 C9 OO5 13 OO5 C10 C5* C 0 1 N N N 20.794 26.623 3.478 4.538 -0.860 -0.099 C10 OO5 14 OO5 O3 O5* O 0 1 N N N 20.607 26.259 4.833 4.982 -0.279 1.129 O3 OO5 15 OO5 C11 C08 C 0 1 N N N 20.435 24.857 5.006 6.134 0.555 0.994 C11 OO5 16 OO5 P1 P09 P 0 1 N N N 21.958 23.955 4.680 5.651 2.140 0.234 P1 OO5 17 OO5 O4 O10 O 0 1 N N N 21.969 22.826 5.727 5.013 1.867 -1.218 O4 OO5 18 OO5 O5 O11 O 0 1 N N N 22.086 23.387 3.298 4.652 2.814 1.093 O5 OO5 19 OO5 O6 O12 O 0 1 N N N 23.094 24.934 5.059 6.949 3.080 0.082 O6 OO5 20 OO5 O7 O4* O 0 1 N N N 22.244 28.576 3.598 2.199 -0.900 0.559 O7 OO5 21 OO5 C12 C1* C 0 1 N N R 22.537 29.657 2.726 1.004 -1.513 0.030 C12 OO5 22 OO5 N3 N9 N 0 1 Y N N 23.607 29.322 1.818 -0.078 -0.530 -0.071 N3 OO5 23 OO5 N4 N16 N 0 1 Y N N 23.657 28.103 1.197 0.060 0.805 -0.469 N4 OO5 24 OO5 C13 C2 C 0 1 Y N N 25.807 31.960 1.056 -3.392 -1.730 0.803 C13 OO5 25 OO5 CL1 CL22 CL 0 0 N N N 26.088 33.639 1.401 -4.253 -3.139 1.339 CL1 OO5 26 OO5 N5 N6 N 0 1 N N N 26.882 29.698 -1.366 -4.175 1.658 -0.023 N5 OO5 27 OO5 C14 C27 C 0 1 N N N 28.630 28.990 -2.888 -6.365 1.247 -1.076 C14 OO5 28 OO5 C15 C29 C 0 1 N N N 28.166 27.000 -1.635 -7.093 3.502 -0.583 C15 OO5 29 OO5 C16 C30 C 0 1 N N N 28.596 28.093 -0.706 -6.085 3.113 0.518 C16 OO5 30 OO5 H1 H1 H 0 1 N N N 24.904 27.393 -0.366 -1.293 2.424 -0.705 H1 OO5 31 OO5 H2 H2 H 0 1 N N N 28.929 30.187 -1.119 -5.880 1.015 1.029 H2 OO5 32 OO5 H3 H3 H 0 1 N N N 27.016 27.661 -3.365 -8.007 2.245 -2.122 H3 OO5 33 OO5 H4 H4 H 0 1 N N N 28.652 27.031 -3.760 -8.397 1.752 -0.441 H4 OO5 34 OO5 H5 H5 H 0 1 N N N 18.716 27.910 1.881 2.691 -4.382 -1.725 H5 OO5 35 OO5 H6 H6 H 0 1 N N N 20.928 28.044 1.240 3.537 -2.161 -1.957 H6 OO5 36 OO5 H7 H7 H 0 1 N N N 21.463 30.318 0.967 1.408 -1.173 -2.096 H7 OO5 37 OO5 H8 H8 H 0 1 N N N 21.093 31.852 2.662 0.911 -3.475 -2.654 H8 OO5 38 OO5 H9 H9 H 0 1 N N N 20.226 28.570 4.141 3.525 -2.455 0.946 H9 OO5 39 OO5 H10 H10 H 0 1 N N N 19.943 26.266 2.880 5.333 -1.475 -0.519 H10 OO5 40 OO5 H11 H11 H 0 1 N N N 21.723 26.171 3.100 4.281 -0.068 -0.803 H11 OO5 41 OO5 H12 H12 H 0 1 N N N 19.657 24.505 4.313 6.566 0.740 1.977 H12 OO5 42 OO5 H13 H13 H 0 1 N N N 20.119 24.662 6.041 6.870 0.059 0.361 H13 OO5 43 OO5 H14 H14 H 0 1 N N N 22.055 21.988 5.288 5.613 1.426 -1.835 H14 OO5 44 OO5 H15 H15 H 0 1 N N N 23.700 25.014 4.332 6.766 3.943 -0.316 H15 OO5 45 OO5 H16 H16 H 0 1 N N N 22.842 30.528 3.325 0.700 -2.358 0.647 H16 OO5 46 OO5 H17 H17 H 0 1 N N N 26.718 30.363 -2.095 -3.719 2.460 -0.322 H17 OO5 47 OO5 H18 H18 H 0 1 N N N 29.719 28.986 -3.043 -5.748 1.429 -1.956 H18 OO5 48 OO5 H19 H19 H 0 1 N N N 28.161 29.686 -3.599 -6.647 0.196 -1.017 H19 OO5 49 OO5 H20 H20 H 0 1 N N N 27.188 26.604 -1.325 -6.592 4.048 -1.383 H20 OO5 50 OO5 H21 H21 H 0 1 N N N 28.908 26.188 -1.632 -7.905 4.096 -0.164 H21 OO5 51 OO5 H22 H22 H 0 1 N N N 28.025 28.054 0.234 -6.568 3.145 1.495 H22 OO5 52 OO5 H23 H23 H 0 1 N N N 29.671 28.018 -0.485 -5.232 3.793 0.501 H23 OO5 53 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OO5 C6 C14 SING N N 1 OO5 C6 C15 SING N N 2 OO5 C14 C5 SING N N 3 OO5 C15 C16 SING N N 4 OO5 C5 N5 SING N N 5 OO5 C5 C16 SING N N 6 OO5 N5 C3 SING N N 7 OO5 C3 N1 DOUB Y N 8 OO5 C3 C2 SING Y N 9 OO5 N1 C13 SING Y N 10 OO5 C4 C2 SING Y N 11 OO5 C4 N4 DOUB Y N 12 OO5 C2 C1 DOUB Y N 13 OO5 C13 CL1 SING N N 14 OO5 C13 N2 DOUB Y N 15 OO5 N4 N3 SING Y N 16 OO5 C1 N2 SING Y N 17 OO5 C1 N3 SING Y N 18 OO5 N3 C12 SING N N 19 OO5 O1 C7 SING N N 20 OO5 C8 C7 SING N N 21 OO5 C8 O2 SING N N 22 OO5 C8 C12 SING N N 23 OO5 C7 C9 SING N N 24 OO5 C12 O7 SING N N 25 OO5 O5 P1 DOUB N N 26 OO5 C9 C10 SING N N 27 OO5 C9 O7 SING N N 28 OO5 C10 O3 SING N N 29 OO5 P1 C11 SING N N 30 OO5 P1 O6 SING N N 31 OO5 P1 O4 SING N N 32 OO5 O3 C11 SING N N 33 OO5 C4 H1 SING N N 34 OO5 C5 H2 SING N N 35 OO5 C6 H3 SING N N 36 OO5 C6 H4 SING N N 37 OO5 O1 H5 SING N N 38 OO5 C7 H6 SING N N 39 OO5 C8 H7 SING N N 40 OO5 O2 H8 SING N N 41 OO5 C9 H9 SING N N 42 OO5 C10 H10 SING N N 43 OO5 C10 H11 SING N N 44 OO5 C11 H12 SING N N 45 OO5 C11 H13 SING N N 46 OO5 O4 H14 SING N N 47 OO5 O6 H15 SING N N 48 OO5 C12 H16 SING N N 49 OO5 N5 H17 SING N N 50 OO5 C14 H18 SING N N 51 OO5 C14 H19 SING N N 52 OO5 C15 H20 SING N N 53 OO5 C15 H21 SING N N 54 OO5 C16 H22 SING N N 55 OO5 C16 H23 SING N N 56 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OO5 InChI InChI 1.03 "InChI=1S/C16H23ClN5O7P/c17-16-20-13(19-8-3-1-2-4-8)9-5-18-22(14(9)21-16)15-12(24)11(23)10(29-15)6-28-7-30(25,26)27/h5,8,10-12,15,23-24H,1-4,6-7H2,(H,19,20,21)(H2,25,26,27)/t10-,11-,12-,15-/m1/s1" OO5 InChIKey InChI 1.03 IVHVIBKVJIZKOC-RTWAVKEYSA-N OO5 SMILES_CANONICAL CACTVS 3.385 "O[C@H]1[C@@H](O)[C@@H](O[C@@H]1COC[P](O)(O)=O)n2ncc3c(NC4CCCC4)nc(Cl)nc23" OO5 SMILES CACTVS 3.385 "O[CH]1[CH](O)[CH](O[CH]1COC[P](O)(O)=O)n2ncc3c(NC4CCCC4)nc(Cl)nc23" OO5 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)[C@H]3[C@@H]([C@@H]([C@H](O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4" OO5 SMILES "OpenEye OEToolkits" 2.0.7 "c1c2c(nc(nc2n(n1)C3C(C(C(O3)COCP(=O)(O)O)O)O)Cl)NC4CCCC4" # _pdbx_chem_comp_identifier.comp_id OO5 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(2~{R},3~{S},4~{R},5~{R})-5-[6-chloranyl-4-(cyclopentylamino)pyrazolo[3,4-d]pyrimidin-1-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methoxymethylphosphonic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OO5 "Create component" 2020-03-23 PDBE OO5 "Initial release" 2021-01-20 RCSB ##