data_OOE # _chem_comp.id OOE _chem_comp.name "2',2'-difluoro-3',3'-cGAMP" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H22 F2 N10 O11 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ;9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)- 3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azan yl-1~{H}-purin-6-one ; _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-24 _chem_comp.pdbx_modified_date 2021-03-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 678.393 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OOE _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YEA _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OOE N N1 N 0 1 Y N N -13.387 20.090 -8.448 -10.180 0.500 0.795 N OOE 1 OOE C C1 C 0 1 Y N N -13.637 21.399 -8.659 -9.528 1.155 -0.148 C OOE 2 OOE O O1 O 0 1 N N N -21.468 18.591 -6.325 0.626 -2.436 1.063 O OOE 3 OOE N11 N2 N 0 1 N N N -14.017 17.953 -7.665 -10.290 -1.158 2.468 111 OOE 4 OOE C1 C2 C 0 1 Y N N -15.796 21.267 -7.720 -7.614 -0.076 0.172 C1 OOE 5 OOE C10 C3 C 0 1 N N N -21.149 13.620 -9.387 9.046 -1.082 0.011 C10 OOE 6 OOE C11 C4 C 0 1 Y N N -21.150 15.843 -10.189 7.143 0.205 0.256 C11 OOE 7 OOE C12 C5 C 0 1 Y N N -19.711 15.726 -10.446 7.782 0.990 1.222 C12 OOE 8 OOE C13 C6 C 0 1 N N N -19.067 14.434 -10.112 9.122 0.688 1.562 C13 OOE 9 OOE C14 C7 C 0 1 Y N N -20.402 17.721 -11.024 5.774 1.771 0.985 C14 OOE 10 OOE C15 C8 C 0 1 N N R -22.664 19.393 -8.827 2.585 -0.571 -0.255 C15 OOE 11 OOE C16 C9 C 0 1 N N R -23.183 17.966 -9.017 4.075 -0.931 -0.102 C16 OOE 12 OOE C17 C10 C 0 1 N N R -22.860 17.643 -10.476 4.834 0.223 -0.774 C17 OOE 13 OOE C18 C11 C 0 1 N N R -23.072 20.013 -10.171 2.573 0.731 -1.071 C18 OOE 14 OOE C19 C12 C 0 1 N N N -22.326 21.238 -10.677 1.597 1.728 -0.445 C19 OOE 15 OOE C2 C13 C 0 1 Y N N -15.593 19.839 -7.460 -8.264 -0.803 1.184 C2 OOE 16 OOE C3 C14 C 0 1 Y N N -14.291 19.264 -7.868 -9.598 -0.477 1.482 C3 OOE 17 OOE C4 C15 C 0 1 Y N N -17.582 20.437 -6.770 -6.249 -1.586 1.020 C4 OOE 18 OOE C5 C16 C 0 1 N N R -19.434 22.684 -8.959 -3.049 0.674 -0.326 C5 OOE 19 OOE C6 C17 C 0 1 N N R -18.009 23.218 -8.801 -4.541 1.042 -0.223 C6 OOE 20 OOE C7 C18 C 0 1 N N R -17.644 22.897 -7.351 -5.289 -0.157 -0.825 C7 OOE 21 OOE C8 C19 C 0 1 N N R -20.023 23.055 -7.591 -3.023 -0.677 -1.059 C8 OOE 22 OOE C9 C20 C 0 1 N N N -21.223 22.273 -7.081 -2.054 -1.630 -0.357 C9 OOE 23 OOE F6 F1 F 0 1 N N N -24.529 17.972 -8.802 4.352 -2.139 -0.752 F6 OOE 24 OOE F9 F2 F 0 1 N N N -18.040 24.566 -9.003 -4.808 2.202 -0.958 F9 OOE 25 OOE N1 N3 N 0 1 Y N N -14.803 21.979 -8.311 -8.278 0.885 -0.462 N1 OOE 26 OOE N2 N4 N 0 1 Y N N -17.026 21.552 -7.277 -6.346 -0.593 0.091 N2 OOE 27 OOE N21 N5 N 0 1 N N N -21.924 12.483 -8.817 9.682 -2.131 -0.604 N21 OOE 28 OOE N3 N6 N 0 1 Y N N -16.722 19.391 -6.877 -7.376 -1.708 1.660 N3 OOE 29 OOE N4 N7 N 0 1 N N N -19.827 13.456 -9.600 9.723 -0.350 0.940 N4 OOE 30 OOE N5 N8 N 0 1 N N N -21.808 14.777 -9.669 7.803 -0.808 -0.317 N5 OOE 31 OOE N6 N9 N 0 1 Y N N -21.492 17.082 -10.565 5.881 0.717 0.125 N6 OOE 32 OOE N7 N10 N 0 1 Y N N -19.316 16.909 -10.955 6.894 1.929 1.629 N7 OOE 33 OOE O1 O2 O 0 1 N N N -18.902 23.006 -6.662 -4.348 -1.215 -1.017 O1 OOE 34 OOE O10 O3 O 0 1 N N N -20.076 23.198 -10.104 -2.343 1.661 -1.080 O10 OOE 35 OOE O2 O4 O 0 1 N N N -20.855 20.946 -6.803 -0.717 -1.340 -0.771 O2 OOE 36 OOE O22 O5 O 0 1 N N N -18.649 21.515 -11.460 -1.106 2.616 1.035 O22 OOE 37 OOE O3 O6 O 0 1 N N N -22.760 20.428 -5.235 0.343 -3.725 -1.089 O3 OOE 38 OOE O4 O7 O 0 1 N N N -20.488 22.814 -12.541 -0.816 3.664 -1.243 O4 OOE 39 OOE O5 O8 O 0 1 N N N -23.015 18.916 -11.130 3.898 1.268 -1.045 O5 OOE 40 OOE O7 O9 O 0 1 N N N -23.174 20.002 -7.663 1.892 -1.604 -0.956 O7 OOE 41 OOE O8 O10 O 0 1 N N N -21.002 20.892 -10.993 0.266 1.416 -0.861 O8 OOE 42 OOE O9 O11 O 0 1 N N N -17.845 14.264 -10.303 9.718 1.346 2.398 O9 OOE 43 OOE P P1 P 0 1 N N N -22.073 19.964 -6.484 0.538 -2.280 -0.406 P OOE 44 OOE P1 P2 P 0 1 N N N -20.024 22.115 -11.299 -0.996 2.368 -0.552 P1 OOE 45 OOE H H1 H 0 1 N N N -12.874 22.005 -9.124 -10.039 1.942 -0.683 H OOE 46 OOE H111 H2 H 0 0 N N N -13.098 17.748 -8.001 -11.211 -0.924 2.665 H111 OOE 47 OOE H1 H3 H 0 1 N N N -14.067 17.750 -6.687 -9.854 -1.870 2.963 H1 OOE 48 OOE H14 H4 H 0 1 N N N -20.392 18.735 -11.395 4.893 2.382 1.112 H14 OOE 49 OOE H15 H5 H 0 1 N N N -21.565 19.359 -8.782 2.133 -0.407 0.723 H15 OOE 50 OOE H16 H6 H 0 1 N N N -22.648 17.276 -8.348 4.342 -0.999 0.952 H16 OOE 51 OOE H17 H7 H 0 1 N N N -23.592 16.917 -10.861 5.282 -0.123 -1.706 H17 OOE 52 OOE H18 H8 H 0 1 N N N -24.127 20.307 -10.071 2.281 0.521 -2.100 H18 OOE 53 OOE H192 H9 H 0 0 N N N -22.325 22.013 -9.896 1.662 1.667 0.641 H192 OOE 54 OOE H191 H10 H 0 0 N N N -22.827 21.625 -11.577 1.851 2.737 -0.769 H191 OOE 55 OOE H4 H11 H 0 1 N N N -18.571 20.381 -6.339 -5.368 -2.184 1.197 H4 OOE 56 OOE H5 H12 H 0 1 N N N -19.383 21.587 -9.022 -2.613 0.573 0.667 H5 OOE 57 OOE H6 H13 H 0 1 N N N -17.328 22.697 -9.490 -4.825 1.181 0.821 H6 OOE 58 OOE H7 H14 H 0 1 N N N -16.936 23.653 -6.981 -5.726 0.125 -1.783 H7 OOE 59 OOE H8 H15 H 0 1 N N N -20.341 24.105 -7.664 -2.717 -0.533 -2.094 H8 OOE 60 OOE H92 H16 H 0 1 N N N -21.601 22.745 -6.162 -2.136 -1.502 0.722 H92 OOE 61 OOE H91 H17 H 0 1 N N N -22.012 22.278 -7.847 -2.301 -2.659 -0.621 H91 OOE 62 OOE HN22 H18 H 0 0 N N N -22.905 12.580 -8.650 10.601 -2.342 -0.375 HN22 OOE 63 OOE HN23 H19 H 0 0 N N N -21.463 11.622 -8.601 9.213 -2.661 -1.267 HN23 OOE 64 OOE HN4 H20 H 0 1 N N N -19.402 12.580 -9.369 10.641 -0.576 1.157 HN4 OOE 65 OOE H2 H21 H 0 1 N N N -18.325 21.694 -12.335 -0.327 3.039 1.421 H2 OOE 66 OOE H3 H22 H 0 1 N N N -22.685 19.759 -4.565 -0.455 -4.191 -0.803 H3 OOE 67 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OOE O4 P1 DOUB N N 1 OOE O22 P1 SING N N 2 OOE P1 O8 SING N N 3 OOE P1 O10 SING N N 4 OOE O5 C17 SING N N 5 OOE O5 C18 SING N N 6 OOE C14 N7 DOUB Y N 7 OOE C14 N6 SING Y N 8 OOE O8 C19 SING N N 9 OOE N7 C12 SING Y N 10 OOE C19 C18 SING N N 11 OOE N6 C17 SING N N 12 OOE N6 C11 SING Y N 13 OOE C17 C16 SING N N 14 OOE C12 C11 DOUB Y N 15 OOE C12 C13 SING N N 16 OOE O9 C13 DOUB N N 17 OOE C11 N5 SING N N 18 OOE C18 C15 SING N N 19 OOE C13 N4 SING N N 20 OOE O10 C5 SING N N 21 OOE N5 C10 DOUB N N 22 OOE N4 C10 SING N N 23 OOE C10 N21 SING N N 24 OOE C16 C15 SING N N 25 OOE C16 F6 SING N N 26 OOE F9 C6 SING N N 27 OOE C5 C6 SING N N 28 OOE C5 C8 SING N N 29 OOE C15 O7 SING N N 30 OOE C6 C7 SING N N 31 OOE C N DOUB Y N 32 OOE C N1 SING Y N 33 OOE N C3 SING Y N 34 OOE N1 C1 DOUB Y N 35 OOE C3 N11 SING N N 36 OOE C3 C2 DOUB Y N 37 OOE C1 C2 SING Y N 38 OOE C1 N2 SING Y N 39 OOE O7 P SING N N 40 OOE C8 C9 SING N N 41 OOE C8 O1 SING N N 42 OOE C2 N3 SING Y N 43 OOE C7 N2 SING N N 44 OOE C7 O1 SING N N 45 OOE N2 C4 SING Y N 46 OOE C9 O2 SING N N 47 OOE N3 C4 DOUB Y N 48 OOE O2 P SING N N 49 OOE P O DOUB N N 50 OOE P O3 SING N N 51 OOE C H SING N N 52 OOE N11 H111 SING N N 53 OOE N11 H1 SING N N 54 OOE C14 H14 SING N N 55 OOE C15 H15 SING N N 56 OOE C16 H16 SING N N 57 OOE C17 H17 SING N N 58 OOE C18 H18 SING N N 59 OOE C19 H192 SING N N 60 OOE C19 H191 SING N N 61 OOE C4 H4 SING N N 62 OOE C5 H5 SING N N 63 OOE C6 H6 SING N N 64 OOE C7 H7 SING N N 65 OOE C8 H8 SING N N 66 OOE C9 H92 SING N N 67 OOE C9 H91 SING N N 68 OOE N21 HN22 SING N N 69 OOE N21 HN23 SING N N 70 OOE N4 HN4 SING N N 71 OOE O22 H2 SING N N 72 OOE O3 H3 SING N N 73 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OOE InChI InChI 1.03 "InChI=1S/C20H22F2N10O11P2/c21-8-12-6(40-18(8)31-4-27-10-14(23)25-3-26-15(10)31)1-38-45(36,37)43-13-7(2-39-44(34,35)42-12)41-19(9(13)22)32-5-28-11-16(32)29-20(24)30-17(11)33/h3-9,12-13,18-19H,1-2H2,(H,34,35)(H,36,37)(H2,23,25,26)(H3,24,29,30,33)/t6-,7-,8-,9-,12-,13-,18-,19-/m1/s1" OOE InChIKey InChI 1.03 BFQVZDRNJPTWKS-ZVCHIEIFSA-N OOE SMILES_CANONICAL CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[C@@H]3O[C@@H]4CO[P](O)(=O)O[C@H]5[C@@H](F)[C@@H](O[C@@H]5CO[P](O)(=O)O[C@H]4[C@H]3F)n6cnc7c(N)ncnc67" OOE SMILES CACTVS 3.385 "NC1=Nc2n(cnc2C(=O)N1)[CH]3O[CH]4CO[P](O)(=O)O[CH]5[CH](F)[CH](O[CH]5CO[P](O)(=O)O[CH]4[CH]3F)n6cnc7c(N)ncnc67" OOE SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@H]4[C@H](O3)COP(=O)(O[C@@H]5[C@@H](COP(=O)(O4)O)O[C@H]([C@@H]5F)n6cnc7c6N=C(NC7=O)N)O)F)N" OOE SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C4C(O3)COP(=O)(OC5C(COP(=O)(O4)O)OC(C5F)n6cnc7c6N=C(NC7=O)N)O)F)N" # _pdbx_chem_comp_identifier.comp_id OOE _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azanyl-1~{H}-purin-6-one" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id OOE _pdbx_chem_comp_synonyms.name "9-[(1~{R},6~{R},8~{R},9~{R},10~{R},15~{R},17~{R},18~{R})-17-(6-aminopurin-9-yl)-9,18-bis(fluoranyl)-3,12-bis(oxidanyl)-3,12-bis(oxidanylidene)-2,4,7,11,13,16-hexaoxa-3$l^{5},12$l^{5}-diphosphatricyclo[13.3.0.0^{6,10}]octadecan-8-yl]-2-azanyl-1~{H}-purin-6-one" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OOE "Create component" 2020-03-24 PDBE OOE "Modify synonyms" 2020-06-05 PDBE OOE "Initial release" 2021-03-31 RCSB ##