data_OOP
#
_chem_comp.id OOP
_chem_comp.name "1-deoxy-1-[(4aR)-4a-[(2R)-1-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}-3-methylidenepentan-2-yl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C23 H35 N4 O17 P3"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-06-17
_chem_comp.pdbx_modified_date 2011-10-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 732.462
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OOP
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3B04
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OOP P P P 0 1 N N N 63.749 26.820 15.215 -9.480 -2.218 0.096 P OOP 1
OOP N1 N1 N 0 1 N N N 61.172 18.569 17.084 -1.933 2.908 0.090 N1 OOP 2
OOP C2 C2 C 0 1 N N N 61.150 17.322 17.637 -1.855 4.187 -0.294 C2 OOP 3
OOP O2 O2 O 0 1 N N N 61.439 17.227 18.858 -2.759 4.948 -0.003 O2 OOP 4
OOP N3 N3 N 0 1 N N N 61.198 16.208 16.838 -0.807 4.656 -0.991 N3 OOP 5
OOP C4 C4 C 0 1 N N N 60.982 16.325 15.500 0.295 3.904 -1.173 C4 OOP 6
OOP O4 O4 O 0 1 N N N 61.093 15.360 14.730 1.210 4.331 -1.844 O4 OOP 7
OOP N5 N5 N 0 1 N N N 60.863 17.701 13.560 0.942 1.560 -1.493 N5 OOP 8
OOP C6 C6 C 0 1 Y N N 61.249 18.989 11.615 1.782 -0.714 -1.559 C6 OOP 9
OOP C7 C7 C 0 1 Y N N 61.486 20.225 11.036 1.689 -2.033 -1.150 C7 OOP 10
OOP C8 C8 C 0 1 Y N N 61.875 21.304 11.826 0.678 -2.424 -0.291 C8 OOP 11
OOP C9 C9 C 0 1 Y N N 61.604 21.243 13.173 -0.251 -1.505 0.160 C9 OOP 12
OOP PA PA P 0 1 N N N 55.250 13.901 14.082 6.312 -0.450 0.715 PA OOP 13
OOP PB PB P 0 1 N N N 56.117 11.293 14.674 7.787 -2.853 -0.198 PB OOP 14
OOP "C1'" "C1'" C 0 1 N N N 61.209 21.178 16.020 -2.296 0.302 0.936 "C1'" OOP 15
OOP C10 C10 C 0 1 N N N 61.174 18.683 15.721 -0.948 2.068 -0.078 C10 OOP 16
OOP N10 N10 N 0 1 N N N 61.175 19.971 15.166 -1.118 0.751 0.190 N10 OOP 17
OOP C11 C11 C 0 1 N N N 56.713 15.837 14.959 4.451 1.462 0.580 C11 OOP 18
OOP O11 O11 O 0 1 N N N 56.406 14.476 15.031 5.320 0.539 -0.079 O11 OOP 19
OOP C12 C12 C 0 1 N N N 57.581 16.089 13.728 3.650 2.243 -0.464 C12 OOP 20
OOP C13 C13 C 0 1 N N R 58.944 17.905 15.062 1.327 2.630 0.662 C13 OOP 21
OOP C14 C14 C 0 1 N N N 58.225 17.337 16.281 0.721 3.574 1.703 C14 OOP 22
OOP C15 C15 C 0 1 N N N 57.806 18.419 13.034 2.992 4.405 0.461 C15 OOP 23
OOP O15 O15 O 0 1 N N N 57.510 18.431 16.878 -0.499 3.017 2.197 O15 OOP 24
OOP C16 C16 C 0 1 N N N 58.114 17.492 13.893 2.673 3.155 0.231 C16 OOP 25
OOP O1A O1A O 0 1 N N N 54.020 13.598 14.947 7.421 0.416 1.496 O1A OOP 26
OOP O1B O1B O 0 1 N N N 54.829 10.577 14.361 8.603 -2.866 1.036 O1B OOP 27
OOP O1P O1P O 0 1 N N N 65.260 26.997 15.362 -9.289 -3.612 0.879 O1P OOP 28
OOP "C2'" "C2'" C 0 1 N N S 62.661 21.710 16.159 -3.430 -0.012 -0.042 "C2'" OOP 29
OOP "O2'" "O2'" O 0 1 N N N 63.512 20.747 16.848 -3.757 1.164 -0.786 "O2'" OOP 30
OOP O2A O2A O 0 1 N N N 55.127 14.636 12.763 5.536 -1.251 1.688 O2A OOP 31
OOP O2B O2B O 0 1 N N N 56.217 11.838 16.089 6.693 -4.032 -0.132 O2B OOP 32
OOP O2P O2P O 0 1 N N N 62.971 28.137 15.330 -10.417 -2.452 -1.193 O2P OOP 33
OOP "C3'" "C3'" C 0 1 N N S 62.746 23.067 16.901 -4.660 -0.480 0.738 "C3'" OOP 34
OOP "O3'" "O3'" O 0 1 N N N 62.451 22.807 18.263 -4.333 -1.656 1.481 "O3'" OOP 35
OOP O3A O3A O 0 1 N N N 55.974 12.522 13.656 7.039 -1.434 -0.332 O3A OOP 36
OOP O3B O3B O 0 1 N N N 57.327 10.583 14.122 8.742 -3.079 -1.475 O3B OOP 37
OOP O3P O3P O 0 1 N N N 63.339 26.024 14.028 -10.116 -1.230 0.995 O3P OOP 38
OOP "C4'" "C4'" C 0 1 N N R 61.747 24.123 16.413 -5.794 -0.794 -0.240 "C4'" OOP 39
OOP "O4'" "O4'" O 0 1 N N N 61.789 24.080 15.000 -6.121 0.381 -0.984 "O4'" OOP 40
OOP C4A C4A C 0 1 N N R 60.498 17.646 14.947 0.400 2.546 -0.552 C4A OOP 41
OOP "C5'" "C5'" C 0 1 N N N 62.052 25.574 16.875 -7.025 -1.263 0.539 "C5'" OOP 42
OOP "O5'" "O5'" O 0 1 N N N 63.419 25.961 16.547 -8.044 -1.667 -0.377 "O5'" OOP 43
OOP C5A C5A C 0 1 Y N N 61.132 18.890 13.001 0.860 0.211 -1.105 C5A OOP 44
OOP C7M C7M C 0 1 N N N 61.867 20.201 9.572 2.691 -3.045 -1.642 C7M OOP 45
OOP C8M C8M C 0 1 N N N 62.200 22.696 11.236 0.589 -3.861 0.156 C8M OOP 46
OOP C9A C9A C 0 1 Y N N 61.242 20.051 13.768 -0.169 -0.182 -0.246 C9A OOP 47
OOP HN3 HN3 H 0 1 N N N 61.391 15.312 17.238 -0.845 5.548 -1.370 HN3 OOP 48
OOP HN5 HN5 H 0 1 N N N 61.693 17.151 13.465 1.337 1.824 -2.339 HN5 OOP 49
OOP H6 H6 H 0 1 N N N 61.155 18.108 10.997 2.571 -0.409 -2.230 H6 OOP 50
OOP H9 H9 H 0 1 N N N 61.675 22.138 13.773 -1.039 -1.817 0.829 H9 OOP 51
OOP "H1'" "H1'" H 0 1 N N N 60.582 21.959 15.564 -2.046 -0.595 1.503 "H1'" OOP 52
OOP "H1'A" "H1'A" H 0 0 N N N 60.822 20.923 17.018 -2.614 1.089 1.621 "H1'A" OOP 53
OOP H11 H11 H 0 1 N N N 55.784 16.421 14.881 3.766 0.917 1.230 H11 OOP 54
OOP H11A H11A H 0 0 N N N 57.260 16.140 15.864 5.043 2.156 1.177 H11A OOP 55
OOP H12 H12 H 0 1 N N N 58.404 15.361 13.674 4.331 2.837 -1.074 H12 OOP 56
OOP H12A H12A H 0 0 N N N 56.987 16.002 12.806 3.106 1.546 -1.101 H12A OOP 57
OOP H13 H13 H 0 1 N N N 59.003 19.001 15.139 1.447 1.638 1.097 H13 OOP 58
OOP H14 H14 H 0 1 N N N 57.529 16.540 15.981 1.422 3.703 2.528 H14 OOP 59
OOP H14A H14A H 0 0 N N N 58.949 16.916 16.994 0.519 4.541 1.242 H14A OOP 60
OOP H15 H15 H 0 1 N N N 58.149 19.432 13.186 2.292 5.059 0.959 H15 OOP 61
OOP H15A H15A H 0 0 N N N 57.207 18.176 12.169 3.956 4.781 0.152 H15A OOP 62
OOP HO15 HO15 H 0 0 N N N 57.044 18.123 17.646 -0.939 3.563 2.862 HO15 OOP 63
OOP HO1A HO1A H 0 0 N N N 53.241 13.936 14.521 7.968 0.967 0.920 HO1A OOP 64
OOP HO1P HO1P H 0 0 N N N 65.702 26.555 14.647 -8.876 -4.308 0.349 HO1P OOP 65
OOP "H2'" "H2'" H 0 1 N N N 63.016 21.862 15.129 -3.112 -0.798 -0.726 "H2'" OOP 66
OOP "HO2'" "HO2'" H 0 0 N N N 64.393 21.096 16.920 -4.048 1.907 -0.239 "HO2'" OOP 67
OOP HO2B HO2B H 0 0 N N N 55.421 11.631 16.565 6.122 -4.083 -0.910 HO2B OOP 68
OOP HO2P HO2P H 0 0 N N N 62.357 28.207 14.609 -11.300 -2.785 -0.982 HO2P OOP 69
OOP "H3'" "H3'" H 0 1 N N N 63.752 23.475 16.721 -4.978 0.306 1.422 "H3'" OOP 70
OOP "HO3'" "HO3'" H 0 0 N N N 62.492 23.618 18.757 -4.042 -2.399 0.935 "HO3'" OOP 71
OOP HO3B HO3B H 0 0 N N N 57.052 9.796 13.667 9.226 -3.916 -1.461 HO3B OOP 72
OOP "H4'" "H4'" H 0 1 N N N 60.764 23.882 16.843 -5.477 -1.581 -0.925 "H4'" OOP 73
OOP "HO4'" "HO4'" H 0 0 N N N 62.345 24.779 14.678 -6.413 1.124 -0.438 "HO4'" OOP 74
OOP "H5'" "H5'" H 0 1 N N N 61.358 26.261 16.369 -6.753 -2.106 1.175 "H5'" OOP 75
OOP "H5'A" "H5'A" H 0 0 N N N 61.918 25.635 17.965 -7.395 -0.446 1.158 "H5'A" OOP 76
OOP H7M H7M H 0 1 N N N 60.992 20.465 8.960 3.537 -3.082 -0.955 H7M OOP 77
OOP H7MA H7MA H 0 0 N N N 62.673 20.927 9.391 2.221 -4.027 -1.692 H7MA OOP 78
OOP H7MB H7MB H 0 0 N N N 62.214 19.193 9.300 3.041 -2.758 -2.634 H7MB OOP 79
OOP H8M H8M H 0 1 N N N 61.264 23.237 11.035 1.169 -3.994 1.069 H8M OOP 80
OOP H8MA H8MA H 0 0 N N N 62.806 23.267 11.955 -0.453 -4.118 0.347 H8MA OOP 81
OOP H8MB H8MB H 0 0 N N N 62.762 22.574 10.298 0.986 -4.509 -0.625 H8MB OOP 82
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OOP P O1P SING N N 1
OOP P O2P SING N N 2
OOP P O3P DOUB N N 3
OOP P "O5'" SING N N 4
OOP N1 C2 SING N N 5
OOP N1 C10 DOUB N N 6
OOP C2 O2 DOUB N N 7
OOP C2 N3 SING N N 8
OOP N3 C4 SING N N 9
OOP C4 O4 DOUB N N 10
OOP C4 C4A SING N N 11
OOP N5 C4A SING N N 12
OOP N5 C5A SING N N 13
OOP C6 C7 DOUB Y N 14
OOP C6 C5A SING Y N 15
OOP C7 C8 SING Y N 16
OOP C7 C7M SING N N 17
OOP C8 C9 DOUB Y N 18
OOP C8 C8M SING N N 19
OOP C9 C9A SING Y N 20
OOP PA O11 SING N N 21
OOP PA O1A SING N N 22
OOP PA O2A DOUB N N 23
OOP PA O3A SING N N 24
OOP PB O1B DOUB N N 25
OOP PB O2B SING N N 26
OOP PB O3A SING N N 27
OOP PB O3B SING N N 28
OOP "C1'" N10 SING N N 29
OOP "C1'" "C2'" SING N N 30
OOP C10 N10 SING N N 31
OOP C10 C4A SING N N 32
OOP N10 C9A SING N N 33
OOP C11 O11 SING N N 34
OOP C11 C12 SING N N 35
OOP C12 C16 SING N N 36
OOP C13 C14 SING N N 37
OOP C13 C16 SING N N 38
OOP C13 C4A SING N N 39
OOP C14 O15 SING N N 40
OOP C15 C16 DOUB N N 41
OOP "C2'" "O2'" SING N N 42
OOP "C2'" "C3'" SING N N 43
OOP "C3'" "O3'" SING N N 44
OOP "C3'" "C4'" SING N N 45
OOP "C4'" "O4'" SING N N 46
OOP "C4'" "C5'" SING N N 47
OOP "C5'" "O5'" SING N N 48
OOP C5A C9A DOUB Y N 49
OOP N3 HN3 SING N N 50
OOP N5 HN5 SING N N 51
OOP C6 H6 SING N N 52
OOP C9 H9 SING N N 53
OOP "C1'" "H1'" SING N N 54
OOP "C1'" "H1'A" SING N N 55
OOP C11 H11 SING N N 56
OOP C11 H11A SING N N 57
OOP C12 H12 SING N N 58
OOP C12 H12A SING N N 59
OOP C13 H13 SING N N 60
OOP C14 H14 SING N N 61
OOP C14 H14A SING N N 62
OOP C15 H15 SING N N 63
OOP C15 H15A SING N N 64
OOP O15 HO15 SING N N 65
OOP O1A HO1A SING N N 66
OOP O1P HO1P SING N N 67
OOP "C2'" "H2'" SING N N 68
OOP "O2'" "HO2'" SING N N 69
OOP O2B HO2B SING N N 70
OOP O2P HO2P SING N N 71
OOP "C3'" "H3'" SING N N 72
OOP "O3'" "HO3'" SING N N 73
OOP O3B HO3B SING N N 74
OOP "C4'" "H4'" SING N N 75
OOP "O4'" "HO4'" SING N N 76
OOP "C5'" "H5'" SING N N 77
OOP "C5'" "H5'A" SING N N 78
OOP C7M H7M SING N N 79
OOP C7M H7MA SING N N 80
OOP C7M H7MB SING N N 81
OOP C8M H8M SING N N 82
OOP C8M H8MA SING N N 83
OOP C8M H8MB SING N N 84
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OOP SMILES ACDLabs 12.01 "O=P(O)(O)OCC(O)C(O)C(O)CN2C3=NC(=O)NC(=O)C3(Nc1cc(c(cc12)C)C)C(C(=C)/CCOP(=O)(O)OP(=O)(O)O)CO"
OOP InChI InChI 1.03
;InChI=1S/C23H35N4O17P3/c1-11(4-5-42-47(40,41)44-46(37,38)39)14(9-28)23-20(24-22(33)25-21(23)32)27(16-7-13(3)12(2)6-15(16)26-23)8-17(29)19(31)18(30)10-43-45(34,35)36/h6-7,14,17-19,26,28-31H,1,4-5,8-10H2,2-3H3,(H,40,41)(H,25,32,33)(H2,34,35,36)(H2,37,38,39)/t14-,17+,18-,19+,23-/m1/s1
;
OOP InChIKey InChI 1.03 KSKIGIXASYOSHG-TUUFUFLPSA-N
OOP SMILES_CANONICAL CACTVS 3.370 "Cc1cc2N[C@@]3([C@H](CO)C(=C)CCO[P](O)(=O)O[P](O)(O)=O)C(=O)NC(=O)N=C3N(C[C@H](O)[C@H](O)[C@H](O)CO[P](O)(O)=O)c2cc1C"
OOP SMILES CACTVS 3.370 "Cc1cc2N[C]3([CH](CO)C(=C)CCO[P](O)(=O)O[P](O)(O)=O)C(=O)NC(=O)N=C3N(C[CH](O)[CH](O)[CH](O)CO[P](O)(O)=O)c2cc1C"
OOP SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)[C@@]3(N2)[C@H](CO)C(=C)CCO[P@](=O)(O)OP(=O)(O)O)C[C@@H]([C@@H]([C@@H](COP(=O)(O)O)O)O)O"
OOP SMILES "OpenEye OEToolkits" 1.7.2 "Cc1cc2c(cc1C)N(C3=NC(=O)NC(=O)C3(N2)C(CO)C(=C)CCOP(=O)(O)OP(=O)(O)O)CC(C(C(COP(=O)(O)O)O)O)O"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
OOP "SYSTEMATIC NAME" ACDLabs 12.01 "1-deoxy-1-[(4aR)-4a-[(2R)-1-hydroxy-5-{[(S)-hydroxy(phosphonooxy)phosphoryl]oxy}-3-methylidenepentan-2-yl]-7,8-dimethyl-2,4-dioxo-3,4,4a,5-tetrahydrobenzo[g]pteridin-10(2H)-yl]-5-O-phosphono-D-ribitol"
OOP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(4R)-4-[(4aR)-7,8-dimethyl-2,4-bis(oxidanylidene)-10-[(2S,3S,4R)-2,3,4-tris(oxidanyl)-5-phosphonooxy-pentyl]-5H-benzo[g]pteridin-4a-yl]-3-methylidene-5-oxidanyl-pentyl] phosphono hydrogen phosphate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OOP "Create component" 2011-06-17 PDBJ
#