data_OP0 # _chem_comp.id OP0 _chem_comp.name "(2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C9 H18 N4 O7 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2014-12-09 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 326.327 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OP0 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4X68 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OP0 C1 C1 C 0 1 N N N N N N -13.109 0.880 16.514 -1.082 1.880 -0.050 C1 OP0 1 OP0 O8 O1 O 0 1 N N N N N N -12.700 0.095 15.628 -0.364 2.856 0.010 O8 OP0 2 OP0 N14 N1 N 0 1 N N N N N N -14.420 1.249 16.599 -0.556 0.674 -0.339 N14 OP0 3 OP0 C2 C2 C 0 1 N N S N N N -15.240 1.157 15.350 -1.391 -0.535 -0.305 C2 OP0 4 OP0 C3 C3 C 0 1 N N N N N N -15.047 2.453 14.581 -2.756 -0.191 0.235 C3 OP0 5 OP0 N15 N2 N 0 1 N N N N N N -14.426 2.317 13.390 -3.861 -0.661 -0.377 N15 OP0 6 OP0 O9 O2 O 0 1 N N N N N N -15.424 3.538 15.033 -2.859 0.510 1.220 O9 OP0 7 OP0 C7 C4 C 0 1 N N N N N N -15.079 1.560 17.887 0.862 0.542 -0.700 C7 OP0 8 OP0 C6 C5 C 0 1 N N R N N N -16.469 0.903 18.107 1.509 -0.503 0.215 C6 OP0 9 OP0 C5 C6 C 0 1 N N N N N N -17.367 1.211 16.883 0.715 -1.809 0.132 C5 OP0 10 OP0 C4 C7 C 0 1 N N N N N N -16.719 0.774 15.547 -0.724 -1.570 0.606 C4 OP0 11 OP0 N16 N3 N 0 1 N N N N N N -16.406 -0.541 18.354 2.893 -0.742 -0.215 N16 OP0 12 OP0 S17 S1 S 0 1 N N N N N N -14.501 -2.029 19.230 5.274 -0.022 0.066 S17 OP0 13 OP0 O10 O3 O 0 1 N N N N N N -15.502 -0.853 19.377 3.817 0.167 0.463 O10 OP0 14 OP0 O13 O4 O 0 1 N N N N N N -13.704 -1.905 20.418 5.445 0.581 -1.322 O13 OP0 15 OP0 O12 O5 O 0 1 N N N N N N -13.786 -1.770 18.028 6.039 0.785 0.951 O12 OP0 16 OP0 O11 O6 O 0 1 N N N N N N -15.361 -3.172 19.200 5.473 -1.422 -0.078 O11 OP0 17 OP0 N21 N4 N 0 1 N N N N N N -16.078 5.553 12.719 -7.719 0.964 -0.096 N21 OP0 18 OP0 C22 C8 C 0 1 N N N N N N -16.388 4.323 12.000 -7.552 -0.491 0.020 C22 OP0 19 OP0 C23 C9 C 0 1 N N N N N N -15.119 3.603 11.478 -6.222 -0.903 -0.615 C23 OP0 20 OP0 O24 O7 O 0 1 N N N N N N -14.178 3.435 12.584 -5.142 -0.338 0.131 O24 OP0 21 OP0 H1 H1 H 0 1 N N N N N N -12.405 1.276 17.231 -2.142 1.978 0.133 H1 OP0 22 OP0 H2 H2 H 0 1 N N N N N N -14.795 0.360 14.736 -1.487 -0.941 -1.312 H2 OP0 23 OP0 H3 H3 H 0 1 N N N N N N -14.141 1.410 13.081 -3.778 -1.221 -1.164 H3 OP0 24 OP0 H4 H4 H 0 1 N N N N N N -14.414 1.224 18.697 0.947 0.221 -1.738 H4 OP0 25 OP0 H5 H5 H 0 1 N N N N N N -15.207 2.651 17.946 1.363 1.502 -0.570 H5 OP0 26 OP0 H6 H6 H 0 1 N N N N N N -16.927 1.387 18.982 1.505 -0.139 1.242 H6 OP0 27 OP0 H7 H7 H 0 1 N N N N N N -17.554 2.294 16.847 0.699 -2.159 -0.900 H7 OP0 28 OP0 H8 H8 H 0 1 N N N N N N -18.322 0.678 17.003 1.188 -2.561 0.763 H8 OP0 29 OP0 H9 H9 H 0 1 N N N N N N -17.296 1.231 14.729 -0.712 -1.198 1.631 H9 OP0 30 OP0 H10 H10 H 0 1 N N N N N N -16.794 -0.321 15.481 -1.283 -2.505 0.564 H10 OP0 31 OP0 H11 H11 H 0 1 N N N N N N -17.315 -0.865 18.615 3.157 -1.704 -0.066 H11 OP0 32 OP0 H12 H12 H 0 1 N N N N N N -16.926 5.978 13.034 -8.591 1.262 0.316 H12 OP0 33 OP0 H13 H13 H 0 1 N N N N N N -15.499 5.342 13.506 -6.938 1.452 0.317 H13 OP0 34 OP0 H15 H15 H 0 1 N N N N N N -17.032 4.569 11.143 -7.555 -0.774 1.072 H15 OP0 35 OP0 H16 H16 H 0 1 N N N N N N -16.925 3.644 12.679 -8.371 -0.993 -0.494 H16 OP0 36 OP0 H17 H17 H 0 1 N N N N N N -15.394 2.617 11.075 -6.139 -1.990 -0.608 H17 OP0 37 OP0 H18 H18 H 0 1 N N N N N N -14.652 4.206 10.685 -6.183 -0.542 -1.643 H18 OP0 38 OP0 H19 H19 H 0 1 N N N N N N -12.816 -1.665 20.181 6.344 0.513 -1.672 H19 OP0 39 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OP0 C23 C22 SING N N 1 OP0 C23 O24 SING N N 2 OP0 C22 N21 SING N N 3 OP0 O24 N15 SING N N 4 OP0 N15 C3 SING N N 5 OP0 C3 O9 DOUB N N 6 OP0 C3 C2 SING N N 7 OP0 C2 C4 SING N N 8 OP0 C2 N14 SING N N 9 OP0 C4 C5 SING N N 10 OP0 O8 C1 DOUB N N 11 OP0 C1 N14 SING N N 12 OP0 N14 C7 SING N N 13 OP0 C5 C6 SING N N 14 OP0 C7 C6 SING N N 15 OP0 O12 S17 DOUB N N 16 OP0 C6 N16 SING N N 17 OP0 N16 O10 SING N N 18 OP0 O11 S17 DOUB N N 19 OP0 S17 O10 SING N N 20 OP0 S17 O13 SING N N 21 OP0 C1 H1 SING N N 22 OP0 C2 H2 SING N N 23 OP0 N15 H3 SING N N 24 OP0 C7 H4 SING N N 25 OP0 C7 H5 SING N N 26 OP0 C6 H6 SING N N 27 OP0 C5 H7 SING N N 28 OP0 C5 H8 SING N N 29 OP0 C4 H9 SING N N 30 OP0 C4 H10 SING N N 31 OP0 N16 H11 SING N N 32 OP0 N21 H12 SING N N 33 OP0 N21 H13 SING N N 34 OP0 C22 H15 SING N N 35 OP0 C22 H16 SING N N 36 OP0 C23 H17 SING N N 37 OP0 C23 H18 SING N N 38 OP0 O13 H19 SING N N 39 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OP0 SMILES ACDLabs 12.01 "O=CN1C(C(=O)NOCCN)CCC(NOS(=O)(=O)O)C1" OP0 InChI InChI 1.03 "InChI=1S/C9H18N4O7S/c10-3-4-19-12-9(15)8-2-1-7(5-13(8)6-14)11-20-21(16,17)18/h6-8,11H,1-5,10H2,(H,12,15)(H,16,17,18)/t7-,8+/m1/s1" OP0 InChIKey InChI 1.03 YTAWXXHGLPATIN-SFYZADRCSA-N OP0 SMILES_CANONICAL CACTVS 3.385 "NCCONC(=O)[C@@H]1CC[C@H](CN1C=O)NO[S](O)(=O)=O" OP0 SMILES CACTVS 3.385 "NCCONC(=O)[CH]1CC[CH](CN1C=O)NO[S](O)(=O)=O" OP0 SMILES_CANONICAL "OpenEye OEToolkits" 1.9.2 "C1C[C@H](N(C[C@@H]1NOS(=O)(=O)O)C=O)C(=O)NOCCN" OP0 SMILES "OpenEye OEToolkits" 1.9.2 "C1CC(N(CC1NOS(=O)(=O)O)C=O)C(=O)NOCCN" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OP0 "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,5R)-N-(2-aminoethoxy)-1-formyl-5-[(sulfooxy)amino]piperidine-2-carboxamide" OP0 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.9.2 "[[(3R,6S)-6-(2-azanylethoxycarbamoyl)-1-methanoyl-piperidin-3-yl]amino] hydrogen sulfate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OP0 "Create component" 2014-12-09 RCSB OP0 "Initial release" 2015-07-01 RCSB OP0 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id OP0 _pdbx_chem_comp_pcm.modified_residue_id SER _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C1 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom OG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #