data_OP6 # _chem_comp.id OP6 _chem_comp.name "6-[(~{E})-2-[1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyridin-1-ium-4-yl]ethenyl]-~{N},~{N}-dimethyl-naphthalen-2-amine" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C26 H33 N2 O3" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2023-08-24 _chem_comp.pdbx_modified_date 2024-08-16 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 421.552 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OP6 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8KFO _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBC # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OP6 C15 C1 C 0 1 Y N N N N N -21.255 10.176 -79.263 5.723 1.497 0.125 C15 OP6 1 OP6 C16 C2 C 0 1 Y N N N N N -20.410 9.085 -79.101 4.375 1.455 -0.020 C16 OP6 2 OP6 C17 C3 C 0 1 Y N N N N N -20.913 7.800 -79.241 3.706 0.228 -0.197 C17 OP6 3 OP6 C21 C4 C 0 1 N N N N N N -16.169 0.856 -78.878 -4.752 1.163 0.455 C21 OP6 4 OP6 C23 C5 C 0 1 N N N N N N -14.193 -0.093 -78.090 -6.887 1.031 1.537 C23 OP6 5 OP6 C24 C6 C 0 1 N N N N N N -13.493 -1.412 -77.783 -8.391 1.021 1.256 C24 OP6 6 OP6 C26 C7 C 0 1 N N N N N N -11.378 -2.427 -77.897 -10.119 -0.258 0.197 C26 OP6 7 OP6 C18 C8 C 0 1 Y N N N N N -22.255 7.617 -79.544 4.417 -0.962 -0.227 C18 OP6 8 OP6 C20 C9 C 0 1 N N N N N N -16.292 1.584 -77.543 -4.095 1.288 -0.921 C20 OP6 9 OP6 C01 C10 C 0 1 N N N N N N -20.011 6.578 -79.072 2.242 0.210 -0.352 C01 OP6 10 OP6 C02 C11 C 0 1 N N N N N N -19.592 6.200 -77.884 1.549 1.360 -0.324 C02 OP6 11 OP6 C03 C12 C 0 1 Y N N N N N -18.707 4.965 -77.791 0.084 1.342 -0.479 C03 OP6 12 OP6 C04 C13 C 0 1 Y N N N N N -17.547 4.915 -78.491 -0.608 0.134 -0.651 C04 OP6 13 OP6 C05 C14 C 0 1 Y N N N N N -16.749 3.791 -78.405 -1.979 0.164 -0.792 C05 OP6 14 OP6 C07 C15 C 0 1 Y N N N N N -18.288 2.799 -76.930 -2.028 2.465 -0.601 C07 OP6 15 OP6 C08 C16 C 0 1 Y N N N N N -19.090 3.922 -77.012 -0.659 2.530 -0.452 C08 OP6 16 OP6 C09 C17 C 0 1 Y N N N N N -25.275 9.611 -80.169 7.913 -2.079 0.049 C09 OP6 17 OP6 C10 C18 C 0 1 Y N N N N N -24.778 10.899 -80.028 8.574 -0.857 0.220 C10 OP6 18 OP6 C11 C19 C 0 1 Y N N N N N -23.437 11.088 -79.726 7.868 0.328 0.242 C11 OP6 19 OP6 C12 C20 C 0 1 Y N N N N N -22.596 9.994 -79.565 6.473 0.306 0.094 C12 OP6 20 OP6 C13 C21 C 0 1 Y N N N N N -23.096 8.709 -79.706 5.811 -0.938 -0.079 C13 OP6 21 OP6 C14 C22 C 0 1 Y N N N N N -24.436 8.518 -80.008 6.562 -2.128 -0.097 C14 OP6 22 OP6 C27 C23 C 0 1 N N N N N N -10.210 -1.865 -77.070 -10.364 -1.544 -0.595 C27 OP6 23 OP6 C29 C24 C 0 1 N N N N N N -8.462 -1.958 -78.555 -10.275 -3.932 -0.417 C29 OP6 24 OP6 C30 C25 C 0 1 N N N N N N -26.593 12.077 -81.314 10.718 -2.091 0.344 C30 OP6 25 OP6 C31 C26 C 0 1 N N N N N N -25.598 13.155 -79.268 10.660 0.438 0.547 C31 OP6 26 OP6 N06 N1 N 1 1 Y N N N N N -17.137 2.753 -77.635 -2.638 1.307 -0.766 N06 OP6 27 OP6 N19 N2 N 0 1 N N N N N N -25.658 12.044 -80.201 9.961 -0.837 0.368 N19 OP6 28 OP6 O22 O1 O 0 1 N N N N N N -15.484 -0.328 -78.586 -6.173 1.145 0.305 O22 OP6 29 OP6 O25 O2 O 0 1 N N N N N N -12.185 -1.348 -78.264 -8.729 -0.151 0.513 O25 OP6 30 OP6 O28 O3 O 0 1 N N N N N N -9.241 -1.127 -77.756 -10.077 -2.674 0.230 O28 OP6 31 OP6 H1 H1 H 0 1 N N N N N N -20.863 11.176 -79.153 6.222 2.445 0.261 H1 OP6 32 OP6 H2 H2 H 0 1 N N N N N N -19.367 9.237 -78.867 3.807 2.373 0.001 H2 OP6 33 OP6 H3 H3 H 0 1 N N N N N N -15.601 1.463 -79.598 -4.425 0.239 0.931 H3 OP6 34 OP6 H4 H4 H 0 1 N N N N N N -17.165 0.635 -79.290 -4.463 2.013 1.074 H4 OP6 35 OP6 H5 H5 H 0 1 N N N N N N -13.611 0.460 -78.842 -6.642 1.877 2.179 H5 OP6 36 OP6 H6 H6 H 0 1 N N N N N N -14.262 0.504 -77.169 -6.604 0.103 2.036 H6 OP6 37 OP6 H7 H7 H 0 1 N N N N N N -14.028 -2.238 -78.275 -8.937 1.023 2.200 H7 OP6 38 OP6 H8 H8 H 0 1 N N N N N N -13.480 -1.579 -76.696 -8.658 1.907 0.680 H8 OP6 39 OP6 H9 H9 H 0 1 N N N N N N -11.957 -3.142 -77.293 -10.422 0.601 -0.402 H9 OP6 40 OP6 H10 H10 H 0 1 N N N N N N -10.994 -2.932 -78.795 -10.700 -0.282 1.118 H10 OP6 41 OP6 H11 H11 H 0 1 N N N N N N -22.648 6.617 -79.655 3.901 -1.901 -0.362 H11 OP6 42 OP6 H12 H12 H 0 1 N N N N N N -16.721 0.894 -76.801 -4.384 0.439 -1.540 H12 OP6 43 OP6 H13 H13 H 0 1 N N N N N N -15.289 1.896 -77.216 -4.422 2.213 -1.397 H13 OP6 44 OP6 H14 H14 H 0 1 N N N N N N -19.712 6.015 -79.944 1.725 -0.729 -0.488 H14 OP6 45 OP6 H15 H15 H 0 1 N N N N N N -19.869 6.751 -76.998 2.065 2.299 -0.188 H15 OP6 46 OP6 H16 H16 H 0 1 N N N N N N -17.249 5.748 -79.111 -0.074 -0.805 -0.674 H16 OP6 47 OP6 H17 H17 H 0 1 N N N N N N -15.819 3.743 -78.952 -2.520 -0.761 -0.925 H17 OP6 48 OP6 H18 H18 H 0 1 N N N N N N -18.579 1.966 -76.308 -2.609 3.375 -0.582 H18 OP6 49 OP6 H19 H19 H 0 1 N N N N N N -20.016 3.969 -76.459 -0.167 3.482 -0.317 H19 OP6 50 OP6 H20 H20 H 0 1 N N N N N N -26.318 9.459 -80.405 8.483 -2.996 0.034 H20 OP6 51 OP6 H21 H21 H 0 1 N N N N N N -23.046 12.089 -79.616 8.386 1.266 0.375 H21 OP6 52 OP6 H22 H22 H 0 1 N N N N N N -24.827 7.517 -80.118 6.066 -3.078 -0.228 H22 OP6 53 OP6 H23 H23 H 0 1 N N N N N N -10.637 -1.212 -76.295 -11.406 -1.582 -0.913 H23 OP6 54 OP6 H24 H24 H 0 1 N N N N N N -9.702 -2.716 -76.593 -9.717 -1.560 -1.472 H24 OP6 55 OP6 H25 H25 H 0 1 N N N N N N -7.708 -1.357 -79.084 -11.315 -4.020 -0.731 H25 OP6 56 OP6 H26 H26 H 0 1 N N N N N N -7.958 -2.706 -77.925 -9.625 -3.998 -1.290 H26 OP6 57 OP6 H27 H27 H 0 1 N N N N N N -9.104 -2.469 -79.288 -10.035 -4.739 0.275 H27 OP6 58 OP6 H28 H28 H 0 1 N N N N N N -27.170 13.013 -81.281 11.014 -2.318 -0.680 H28 OP6 59 OP6 H29 H29 H 0 1 N N N N N N -26.037 12.022 -82.262 11.608 -1.989 0.965 H29 OP6 60 OP6 H30 H30 H 0 1 N N N N N N -27.280 11.221 -81.241 10.096 -2.898 0.730 H30 OP6 61 OP6 H31 H31 H 0 1 N N N N N N -24.837 12.949 -78.501 10.941 0.838 -0.427 H31 OP6 62 OP6 H32 H32 H 0 1 N N N N N N -25.333 14.075 -79.810 10.003 1.145 1.054 H32 OP6 63 OP6 H33 H33 H 0 1 N N N N N N -26.579 13.283 -78.787 11.556 0.280 1.147 H33 OP6 64 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OP6 C30 N19 SING N N 1 OP6 N19 C10 SING N N 2 OP6 N19 C31 SING N N 3 OP6 C09 C10 DOUB Y N 4 OP6 C09 C14 SING Y N 5 OP6 C10 C11 SING Y N 6 OP6 C14 C13 DOUB Y N 7 OP6 C11 C12 DOUB Y N 8 OP6 C13 C12 SING Y N 9 OP6 C13 C18 SING Y N 10 OP6 C12 C15 SING Y N 11 OP6 C18 C17 DOUB Y N 12 OP6 C15 C16 DOUB Y N 13 OP6 C17 C16 SING Y N 14 OP6 C17 C01 SING N N 15 OP6 C01 C02 DOUB N E 16 OP6 C21 O22 SING N N 17 OP6 C21 C20 SING N N 18 OP6 O22 C23 SING N N 19 OP6 C29 O28 SING N N 20 OP6 C04 C05 DOUB Y N 21 OP6 C04 C03 SING Y N 22 OP6 C05 N06 SING Y N 23 OP6 O25 C26 SING N N 24 OP6 O25 C24 SING N N 25 OP6 C23 C24 SING N N 26 OP6 C26 C27 SING N N 27 OP6 C02 C03 SING N N 28 OP6 C03 C08 DOUB Y N 29 OP6 O28 C27 SING N N 30 OP6 N06 C20 SING N N 31 OP6 N06 C07 DOUB Y N 32 OP6 C08 C07 SING Y N 33 OP6 C15 H1 SING N N 34 OP6 C16 H2 SING N N 35 OP6 C21 H3 SING N N 36 OP6 C21 H4 SING N N 37 OP6 C23 H5 SING N N 38 OP6 C23 H6 SING N N 39 OP6 C24 H7 SING N N 40 OP6 C24 H8 SING N N 41 OP6 C26 H9 SING N N 42 OP6 C26 H10 SING N N 43 OP6 C18 H11 SING N N 44 OP6 C20 H12 SING N N 45 OP6 C20 H13 SING N N 46 OP6 C01 H14 SING N N 47 OP6 C02 H15 SING N N 48 OP6 C04 H16 SING N N 49 OP6 C05 H17 SING N N 50 OP6 C07 H18 SING N N 51 OP6 C08 H19 SING N N 52 OP6 C09 H20 SING N N 53 OP6 C11 H21 SING N N 54 OP6 C14 H22 SING N N 55 OP6 C27 H23 SING N N 56 OP6 C27 H24 SING N N 57 OP6 C29 H25 SING N N 58 OP6 C29 H26 SING N N 59 OP6 C29 H27 SING N N 60 OP6 C30 H28 SING N N 61 OP6 C30 H29 SING N N 62 OP6 C30 H30 SING N N 63 OP6 C31 H31 SING N N 64 OP6 C31 H32 SING N N 65 OP6 C31 H33 SING N N 66 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OP6 InChI InChI 1.06 "InChI=1S/C26H33N2O3/c1-27(2)26-9-8-24-20-23(6-7-25(24)21-26)5-4-22-10-12-28(13-11-22)14-15-30-18-19-31-17-16-29-3/h4-13,20-21H,14-19H2,1-3H3/q+1" OP6 InChIKey InChI 1.06 WKTJDXGTTJINPQ-UHFFFAOYSA-N OP6 SMILES_CANONICAL CACTVS 3.385 "COCCOCCOCC[n+]1ccc(/C=C/c2ccc3cc(ccc3c2)N(C)C)cc1" OP6 SMILES CACTVS 3.385 "COCCOCCOCC[n+]1ccc(C=Cc2ccc3cc(ccc3c2)N(C)C)cc1" OP6 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2cc(ccc2c1)/C=C/c3cc[n+](cc3)CCOCCOCCOC" OP6 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)c1ccc2cc(ccc2c1)C=Cc3cc[n+](cc3)CCOCCOCCOC" # _pdbx_chem_comp_identifier.comp_id OP6 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "6-[(~{E})-2-[1-[2-[2-(2-methoxyethoxy)ethoxy]ethyl]pyridin-1-ium-4-yl]ethenyl]-~{N},~{N}-dimethyl-naphthalen-2-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OP6 "Create component" 2023-08-24 PDBC OP6 "Initial release" 2024-08-21 RCSB #