data_OP9 # _chem_comp.id OP9 _chem_comp.name "(1~{S},10~{R},20~{E})-12-methyl-10-[(7-methyl-2~{H}-indazol-5-yl)methyl]-15,18-dioxa-9,12,24,26-tetrazapentacyclo[20.5.2.1^{1,4}.1^{3,7}.0^{25,28}]hentriaconta-3(30),4,6,20,22,24,28-heptaene-8,11,27-trione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H36 N6 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-16 _chem_comp.pdbx_modified_date 2022-12-02 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 620.698 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OP9 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8AX6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OP9 C4 C1 C 0 1 Y N N 16.227 20.718 -5.103 -1.227 -2.183 -0.297 C4 OP9 1 OP9 C5 C2 C 0 1 Y N N 18.147 23.558 -7.704 -5.235 0.583 0.023 C5 OP9 2 OP9 C6 C3 C 0 1 Y N N 10.720 22.470 1.077 6.052 -1.885 -0.706 C6 OP9 3 OP9 C7 C4 C 0 1 Y N N 10.474 26.589 1.721 8.036 1.451 0.737 C7 OP9 4 OP9 C8 C5 C 0 1 Y N N 19.880 24.708 -8.823 -7.397 1.330 -0.389 C8 OP9 5 OP9 C10 C6 C 0 1 Y N N 14.945 21.381 -4.732 -0.286 -2.589 0.704 C10 OP9 6 OP9 C13 C7 C 0 1 Y N N 16.468 20.758 -6.556 -2.539 -2.317 -0.100 C13 OP9 7 OP9 C15 C8 C 0 1 Y N N 11.082 23.239 -0.032 5.335 -1.077 0.180 C15 OP9 8 OP9 C17 C9 C 0 1 Y N N 10.293 24.427 2.339 7.950 -0.436 -0.551 C17 OP9 9 OP9 C20 C10 C 0 1 N N N 19.185 25.429 -5.352 -4.352 3.379 0.066 C20 OP9 10 OP9 C21 C11 C 0 1 N N N 14.541 21.496 -3.268 1.118 -2.363 0.549 C21 OP9 11 OP9 C22 C12 C 0 1 N N N 13.679 23.834 -1.212 2.899 0.536 -0.554 C22 OP9 12 OP9 C24 C13 C 0 1 N N N 15.939 21.325 -8.549 -4.578 -2.564 1.180 C24 OP9 13 OP9 C26 C14 C 0 1 N N N 19.167 26.544 -4.299 -3.924 4.779 0.156 C26 OP9 14 OP9 C28 C15 C 0 1 N N N 16.476 25.342 0.384 0.969 3.341 0.841 C28 OP9 15 OP9 C1 C16 C 0 1 Y N N 14.207 21.950 -5.758 -0.743 -3.075 1.948 C1 OP9 16 OP9 C11 C17 C 0 1 Y N N 18.950 24.631 -7.686 -6.108 1.577 -0.103 C11 OP9 17 OP9 C12 C18 C 0 1 Y N N 15.531 21.379 -7.321 -3.066 -2.671 1.176 C12 OP9 18 OP9 C14 C19 C 0 1 Y N N 18.088 22.600 -8.536 -5.584 -0.725 -0.203 C14 OP9 19 OP9 C16 C20 C 0 1 Y N N 10.325 23.060 2.274 7.325 -1.591 -1.070 C16 OP9 20 OP9 C18 C21 C 0 1 Y N N 18.940 22.726 -9.539 -6.957 -0.906 -0.582 C18 OP9 21 OP9 C19 C22 C 0 1 N N N 18.935 25.718 -6.613 -5.657 3.036 0.006 C19 OP9 22 OP9 C2 C23 C 0 1 Y N N 14.433 21.976 -7.031 -2.185 -3.074 2.112 C2 OP9 23 OP9 C23 C24 C 0 1 N N N 17.890 20.739 -10.054 -6.025 -3.001 -0.780 C23 OP9 24 OP9 C25 C25 C 0 1 N N N 17.684 20.201 -7.669 -3.702 -2.042 -1.067 C25 OP9 25 OP9 C27 C26 C 0 1 N N N 14.958 25.449 0.239 2.163 2.719 -0.006 C27 OP9 26 OP9 C29 C27 C 0 1 N N N 17.274 26.721 -2.922 -1.747 5.644 -0.348 C29 OP9 27 OP9 C3 C28 C 0 1 Y N N 11.026 24.630 0.048 5.874 0.043 0.721 C3 OP9 28 OP9 C30 C29 C 0 1 N N N 16.958 26.779 -1.424 -0.976 4.705 0.658 C30 OP9 29 OP9 C31 C30 C 0 1 N N R 13.037 22.478 -1.506 2.989 -0.932 -0.477 C31 OP9 30 OP9 C32 C31 C 0 1 N N S 17.258 21.304 -8.797 -5.015 -2.064 -0.241 C32 OP9 31 OP9 C33 C32 C 0 1 N N N 9.934 22.238 3.486 8.068 -2.491 -2.024 C33 OP9 32 OP9 C34 C33 C 0 1 N N N 14.523 23.123 1.051 2.058 0.832 1.780 C34 OP9 33 OP9 C35 C34 C 0 1 N N N 11.511 22.541 -1.344 3.923 -1.461 0.543 C35 OP9 34 OP9 C9 C35 C 0 1 Y N N 10.644 25.243 1.234 7.195 0.410 0.387 C9 OP9 35 OP9 N36 N1 N 0 1 Y N N 19.847 23.661 -9.815 -7.816 0.085 -0.545 N36 OP9 36 OP9 N37 N2 N 0 1 Y N N 10.070 26.513 2.962 9.198 1.275 0.094 N37 OP9 37 OP9 N38 N3 N 0 1 Y N N 9.981 25.255 3.274 9.139 0.120 -0.695 N38 OP9 38 OP9 N39 N4 N 0 1 N N N 18.876 21.647 -10.487 -7.117 -2.274 -0.837 N39 OP9 39 OP9 N40 N5 N 0 1 N N N 13.381 22.301 -2.900 1.576 -1.454 -0.275 N40 OP9 40 OP9 N41 N6 N 0 1 N N N 14.386 24.125 0.027 2.293 1.354 0.422 N41 OP9 41 OP9 O42 O1 O 0 1 N N N 15.209 20.987 -2.433 1.904 -3.085 1.148 O42 OP9 42 OP9 O43 O2 O 0 1 N N N 13.587 24.683 -2.025 3.382 1.101 -1.499 O43 OP9 43 OP9 O44 O3 O 0 1 N N N 17.570 19.755 -10.630 -5.874 -4.200 -1.125 O44 OP9 44 OP9 O45 O4 O 0 1 N N N 18.523 26.113 -3.130 -2.911 4.942 -0.849 O45 OP9 45 OP9 O46 O5 O 0 1 N N N 17.079 25.492 -0.873 0.343 4.421 0.184 O46 OP9 46 OP9 H1 H1 H 0 1 N N N 16.900 20.262 -4.391 -0.773 -1.866 -1.216 H1 OP9 47 OP9 H2 H2 H 0 1 N N N 17.443 23.499 -6.887 -4.105 0.719 0.229 H2 OP9 48 OP9 H3 H3 H 0 1 N N N 10.747 21.393 1.004 5.582 -2.770 -1.108 H3 OP9 49 OP9 H4 H4 H 0 1 N N N 10.649 27.496 1.162 7.798 2.261 1.410 H4 OP9 50 OP9 H5 H5 H 0 1 N N N 20.573 25.531 -8.913 -8.111 2.120 -0.402 H5 OP9 51 OP9 H6 H6 H 0 1 N N N 19.402 24.412 -5.061 -3.616 2.494 0.094 H6 OP9 52 OP9 H7 H7 H 0 1 N N N 15.528 22.206 -9.064 -4.958 -3.542 1.407 H7 OP9 53 OP9 H8 H8 H 0 1 N N N 15.514 20.411 -8.990 -4.860 -1.777 1.938 H8 OP9 54 OP9 H9 H9 H 0 1 N N N 20.202 26.829 -4.057 -4.766 5.378 -0.139 H9 OP9 55 OP9 H10 H10 H 0 1 N N N 18.632 27.415 -4.705 -3.546 4.982 1.102 H10 OP9 56 OP9 H11 H11 H 0 1 N N N 16.736 24.357 0.800 0.153 2.512 0.981 H11 OP9 57 OP9 H12 H12 H 0 1 N N N 16.836 26.132 1.060 1.292 3.698 1.827 H12 OP9 58 OP9 H13 H13 H 0 1 N N N 13.302 22.450 -5.446 -0.123 -3.372 2.667 H13 OP9 59 OP9 H14 H14 H 0 1 N N N 18.716 26.738 -6.892 -6.317 3.796 -0.038 H14 OP9 60 OP9 H15 H15 H 0 1 N N N 13.782 22.440 -7.756 -2.567 -3.481 3.005 H15 OP9 61 OP9 H16 H16 H 0 1 N N N 17.538 19.161 -7.995 -3.553 -1.084 -1.554 H16 OP9 62 OP9 H17 H17 H 0 1 N N N 18.711 20.328 -7.297 -3.717 -2.815 -1.828 H17 OP9 63 OP9 H18 H18 H 0 1 N N N 14.718 26.092 -0.621 1.845 2.832 -1.071 H18 OP9 64 OP9 H19 H19 H 0 1 N N N 14.534 25.887 1.154 2.981 3.305 0.187 H19 OP9 65 OP9 H20 H20 H 0 1 N N N 17.295 27.743 -3.329 -1.984 6.476 0.158 H20 OP9 66 OP9 H21 H21 H 0 1 N N N 16.496 26.137 -3.435 -1.071 5.870 -1.153 H21 OP9 67 OP9 H22 H22 H 0 1 N N N 11.280 25.231 -0.813 5.297 0.650 1.403 H22 OP9 68 OP9 H23 H23 H 0 1 N N N 17.664 27.460 -0.926 -0.901 5.153 1.588 H23 OP9 69 OP9 H24 H24 H 0 1 N N N 15.931 27.146 -1.279 -1.582 3.732 0.680 H24 OP9 70 OP9 H25 H25 H 0 1 N N N 13.467 21.692 -0.868 3.310 -1.313 -1.477 H25 OP9 71 OP9 H26 H26 H 0 1 N N N 10.825 22.046 4.102 7.893 -2.159 -3.047 H26 OP9 72 OP9 H27 H27 H 0 1 N N N 9.190 22.790 4.079 9.135 -2.449 -1.806 H27 OP9 73 OP9 H28 H28 H 0 1 N N N 9.503 21.281 3.156 7.713 -3.515 -1.908 H28 OP9 74 OP9 H29 H29 H 0 1 N N N 15.085 23.540 1.900 2.325 -0.224 1.814 H29 OP9 75 OP9 H30 H30 H 0 1 N N N 13.526 22.808 1.392 2.669 1.385 2.492 H30 OP9 76 OP9 H31 H31 H 0 1 N N N 15.063 22.255 0.644 1.005 0.949 2.036 H31 OP9 77 OP9 H32 H32 H 0 1 N N N 11.089 23.098 -2.194 3.841 -2.547 0.583 H32 OP9 78 OP9 H33 H33 H 0 1 N N N 11.114 21.515 -1.344 3.672 -1.043 1.518 H33 OP9 79 OP9 H34 H34 H 0 1 N N N 9.866 27.285 3.564 9.966 1.864 0.162 H34 OP9 80 OP9 H35 H35 H 0 1 N N N 19.435 21.557 -11.311 -8.079 -2.691 -1.072 H35 OP9 81 OP9 H36 H36 H 0 1 N N N 12.824 22.730 -3.611 0.894 -1.022 -0.866 H36 OP9 82 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OP9 O44 C23 DOUB N N 1 OP9 N39 C23 SING N N 2 OP9 N39 C18 SING N N 3 OP9 C23 C32 SING N N 4 OP9 N36 C18 DOUB Y N 5 OP9 N36 C8 SING Y N 6 OP9 C18 C14 SING Y N 7 OP9 C8 C11 DOUB Y N 8 OP9 C32 C24 SING N N 9 OP9 C32 C14 SING N N 10 OP9 C32 C25 SING N N 11 OP9 C24 C12 SING N N 12 OP9 C14 C5 DOUB Y N 13 OP9 C5 C11 SING Y N 14 OP9 C11 C19 SING N N 15 OP9 C25 C13 SING N N 16 OP9 C12 C2 DOUB Y N 17 OP9 C12 C13 SING Y N 18 OP9 C2 C1 SING Y N 19 OP9 C19 C20 DOUB N E 20 OP9 C13 C4 DOUB Y N 21 OP9 C1 C10 DOUB Y N 22 OP9 C20 C26 SING N N 23 OP9 C4 C10 SING Y N 24 OP9 C10 C21 SING N N 25 OP9 C26 O45 SING N N 26 OP9 C21 N40 SING N N 27 OP9 C21 O42 DOUB N N 28 OP9 O45 C29 SING N N 29 OP9 C29 C30 SING N N 30 OP9 N40 C31 SING N N 31 OP9 O43 C22 DOUB N N 32 OP9 C31 C35 SING N N 33 OP9 C31 C22 SING N N 34 OP9 C30 O46 SING N N 35 OP9 C35 C15 SING N N 36 OP9 C22 N41 SING N N 37 OP9 O46 C28 SING N N 38 OP9 C15 C3 DOUB Y N 39 OP9 C15 C6 SING Y N 40 OP9 N41 C27 SING N N 41 OP9 N41 C34 SING N N 42 OP9 C3 C9 SING Y N 43 OP9 C27 C28 SING N N 44 OP9 C6 C16 DOUB Y N 45 OP9 C9 C7 DOUB Y N 46 OP9 C9 C17 SING Y N 47 OP9 C7 N37 SING Y N 48 OP9 C16 C17 SING Y N 49 OP9 C16 C33 SING N N 50 OP9 C17 N38 DOUB Y N 51 OP9 N37 N38 SING Y N 52 OP9 C4 H1 SING N N 53 OP9 C5 H2 SING N N 54 OP9 C6 H3 SING N N 55 OP9 C7 H4 SING N N 56 OP9 C8 H5 SING N N 57 OP9 C20 H6 SING N N 58 OP9 C24 H7 SING N N 59 OP9 C24 H8 SING N N 60 OP9 C26 H9 SING N N 61 OP9 C26 H10 SING N N 62 OP9 C28 H11 SING N N 63 OP9 C28 H12 SING N N 64 OP9 C1 H13 SING N N 65 OP9 C19 H14 SING N N 66 OP9 C2 H15 SING N N 67 OP9 C25 H16 SING N N 68 OP9 C25 H17 SING N N 69 OP9 C27 H18 SING N N 70 OP9 C27 H19 SING N N 71 OP9 C29 H20 SING N N 72 OP9 C29 H21 SING N N 73 OP9 C3 H22 SING N N 74 OP9 C30 H23 SING N N 75 OP9 C30 H24 SING N N 76 OP9 C31 H25 SING N N 77 OP9 C33 H26 SING N N 78 OP9 C33 H27 SING N N 79 OP9 C33 H28 SING N N 80 OP9 C34 H29 SING N N 81 OP9 C34 H30 SING N N 82 OP9 C34 H31 SING N N 83 OP9 C35 H32 SING N N 84 OP9 C35 H33 SING N N 85 OP9 N37 H34 SING N N 86 OP9 N39 H35 SING N N 87 OP9 N40 H36 SING N N 88 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OP9 InChI InChI 1.06 "InChI=1S/C35H36N6O5/c1-21-12-23(13-27-20-37-40-30(21)27)15-29-33(43)41(2)7-9-46-11-10-45-8-3-4-22-14-28-31(36-19-22)39-34(44)35(28)17-25-6-5-24(32(42)38-29)16-26(25)18-35/h3-6,12-14,16,19-20,29H,7-11,15,17-18H2,1-2H3,(H,37,40)(H,38,42)(H,36,39,44)/b4-3+/t29-,35+/m1/s1" OP9 InChIKey InChI 1.06 LJMGRDULDLZQAJ-MYUYIAROSA-N OP9 SMILES_CANONICAL CACTVS 3.385 "CN1CCOCCOC/C=C/c2cnc3NC(=O)[C@]4(Cc5ccc(cc5C4)C(=O)N[C@H](Cc6cc(C)c7n[nH]cc7c6)C1=O)c3c2" OP9 SMILES CACTVS 3.385 "CN1CCOCCOCC=Cc2cnc3NC(=O)[C]4(Cc5ccc(cc5C4)C(=O)N[CH](Cc6cc(C)c7n[nH]cc7c6)C1=O)c3c2" OP9 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "Cc1cc(cc2c1n[nH]c2)C[C@@H]3C(=O)N(CCOCCOC/C=C/c4cc5c(nc4)NC(=O)[C@]56Cc7ccc(cc7C6)C(=O)N3)C" OP9 SMILES "OpenEye OEToolkits" 3.1.0.0 "Cc1cc(cc2c1n[nH]c2)CC3C(=O)N(CCOCCOCC=Cc4cc5c(nc4)NC(=O)C56Cc7ccc(cc7C6)C(=O)N3)C" # _pdbx_chem_comp_identifier.comp_id OP9 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{S},10~{R},20~{E})-12-methyl-10-[(7-methyl-2~{H}-indazol-5-yl)methyl]-15,18-dioxa-9,12,24,26-tetrazapentacyclo[20.5.2.1^{1,4}.1^{3,7}.0^{25,28}]hentriaconta-3(30),4,6,20,22,24,28-heptaene-8,11,27-trione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OP9 "Create component" 2022-09-16 PDBE OP9 "Initial release" 2022-12-07 RCSB #