data_OPK # _chem_comp.id OPK _chem_comp.name "(2~{S})-2-[[(2~{S})-2-azanyl-6-[(4-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]-3-methyl-butanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H28 N4 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-03-26 _chem_comp.pdbx_modified_date 2022-03-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 424.448 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OPK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YC9 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OPK C01 C1 C 0 1 N N N -9.234 -14.113 34.241 9.749 1.306 0.276 C01 OPK 1 OPK C02 C2 C 0 1 N N N -8.996 -12.532 34.251 8.569 0.458 -0.202 C02 OPK 2 OPK C03 C3 C 0 1 N N N -8.580 -12.091 32.808 8.657 -0.936 0.422 C03 OPK 3 OPK C04 C4 C 0 1 N N S -10.190 -11.589 34.697 7.258 1.124 0.219 C04 OPK 4 OPK C06 C5 C 0 1 N N N -12.795 -11.907 34.590 5.694 -0.721 0.510 C06 OPK 5 OPK C08 C6 C 0 1 N N S -14.063 -12.605 33.901 4.531 -1.557 0.039 C08 OPK 6 OPK C10 C7 C 0 1 N N N -14.897 -11.675 32.964 3.221 -0.830 0.350 C10 OPK 7 OPK C11 C8 C 0 1 N N N -14.580 -11.711 31.419 2.049 -1.618 -0.238 C11 OPK 8 OPK C12 C9 C 0 1 N N N -15.775 -12.113 30.429 0.739 -0.891 0.073 C12 OPK 9 OPK C13 C10 C 0 1 N N N -15.698 -13.564 29.801 -0.433 -1.679 -0.515 C13 OPK 10 OPK C15 C11 C 0 1 N N N -17.626 -14.615 28.480 -2.860 -1.497 -0.640 C15 OPK 11 OPK C18 C12 C 0 1 N N N -16.532 -16.958 28.186 -5.237 -1.468 -0.852 C18 OPK 12 OPK C19 C13 C 0 1 Y N N -16.226 -17.770 26.920 -6.415 -0.617 -0.454 C19 OPK 13 OPK C20 C14 C 0 1 Y N N -15.037 -17.763 26.168 -6.857 0.389 -1.293 C20 OPK 14 OPK C21 C15 C 0 1 Y N N -14.887 -18.538 25.003 -7.938 1.169 -0.927 C21 OPK 15 OPK C22 C16 C 0 1 Y N N -15.943 -19.325 24.555 -8.576 0.944 0.278 C22 OPK 16 OPK C23 C17 C 0 1 Y N N -17.121 -19.346 25.270 -8.135 -0.062 1.117 C23 OPK 17 OPK C24 C18 C 0 1 Y N N -17.251 -18.578 26.417 -7.058 -0.847 0.748 C24 OPK 18 OPK C28 C19 C 0 1 N N N -10.021 -10.033 34.384 7.171 2.497 -0.396 C28 OPK 19 OPK N05 N1 N 0 1 N N N -11.509 -12.160 34.135 6.128 0.312 -0.239 N05 OPK 20 OPK N09 N2 N 0 1 N N N -14.964 -13.052 34.974 4.549 -2.853 0.730 N09 OPK 21 OPK N14 N3 N 0 1 N N N -16.458 -13.828 28.536 -1.688 -0.983 -0.217 N14 OPK 22 OPK N25 N4 N 1 1 N N N -15.818 -20.176 23.356 -9.733 1.780 0.670 N25 OPK 23 OPK O07 O1 O 0 1 N N N -13.025 -11.174 35.523 6.238 -0.979 1.563 O07 OPK 24 OPK O16 O2 O 0 1 N N N -18.702 -14.128 28.805 -2.876 -2.537 -1.268 O16 OPK 25 OPK O17 O3 O 0 1 N N N -17.658 -15.988 28.060 -4.012 -0.857 -0.366 O17 OPK 26 OPK O26 O4 O 0 1 N N N -16.762 -20.867 22.993 -10.122 2.667 -0.069 O26 OPK 27 OPK O27 O5 O -1 1 N N N -14.755 -20.230 22.750 -10.296 1.582 1.732 O27 OPK 28 OPK O29 O6 O 0 1 N N N -9.186 -9.456 35.094 8.107 3.418 -0.117 O29 OPK 29 OPK O30 O7 O 0 1 N N N -10.778 -9.510 33.527 6.260 2.769 -1.141 O30 OPK 30 OPK H012 H1 H 0 0 N N N -9.528 -14.446 35.247 9.718 1.392 1.362 H012 OPK 31 OPK H011 H2 H 0 0 N N N -10.032 -14.359 33.525 10.683 0.832 -0.024 H011 OPK 32 OPK H013 H3 H 0 0 N N N -8.305 -14.622 33.943 9.686 2.299 -0.169 H013 OPK 33 OPK H021 H4 H 0 0 N N N -8.147 -12.332 34.921 8.600 0.372 -1.288 H021 OPK 34 OPK H031 H5 H 0 0 N N N -8.411 -11.004 32.791 8.626 -0.850 1.509 H031 OPK 35 OPK H032 H6 H 0 0 N N N -7.655 -12.611 32.518 7.816 -1.541 0.082 H032 OPK 36 OPK H033 H7 H 0 0 N N N -9.382 -12.348 32.101 9.591 -1.411 0.122 H033 OPK 37 OPK H041 H8 H 0 0 N N N -10.253 -11.673 35.792 7.227 1.210 1.305 H041 OPK 38 OPK H081 H9 H 0 0 N N N -13.709 -13.470 33.320 4.611 -1.717 -1.036 H081 OPK 39 OPK H101 H10 H 0 0 N N N -14.743 -10.641 33.306 3.099 -0.749 1.430 H101 OPK 40 OPK H102 H11 H 0 0 N N N -15.955 -11.948 33.088 3.246 0.167 -0.089 H102 OPK 41 OPK H111 H12 H 0 0 N N N -13.767 -12.436 31.266 2.172 -1.700 -1.318 H111 OPK 42 OPK H112 H13 H 0 0 N N N -14.236 -10.707 31.130 2.025 -2.615 0.201 H112 OPK 43 OPK H121 H14 H 0 0 N N N -15.785 -11.388 29.602 0.617 -0.810 1.153 H121 OPK 44 OPK H122 H15 H 0 0 N N N -16.717 -12.039 30.992 0.764 0.106 -0.366 H122 OPK 45 OPK H132 H16 H 0 0 N N N -16.071 -14.268 30.559 -0.311 -1.761 -1.595 H132 OPK 46 OPK H131 H17 H 0 0 N N N -14.638 -13.775 29.595 -0.458 -2.676 -0.076 H131 OPK 47 OPK H182 H18 H 0 0 N N N -16.780 -17.664 28.992 -5.344 -2.463 -0.419 H182 OPK 48 OPK H181 H19 H 0 0 N N N -15.626 -16.395 28.457 -5.197 -1.547 -1.939 H181 OPK 49 OPK H201 H20 H 0 0 N N N -14.214 -17.144 26.495 -6.357 0.565 -2.234 H201 OPK 50 OPK H211 H21 H 0 0 N N N -13.955 -18.522 24.458 -8.282 1.955 -1.582 H211 OPK 51 OPK H231 H22 H 0 0 N N N -17.944 -19.961 24.937 -8.634 -0.238 2.058 H231 OPK 52 OPK H241 H23 H 0 0 N N N -18.191 -18.605 26.949 -6.713 -1.633 1.404 H241 OPK 53 OPK H051 H24 H 0 0 N N N -11.428 -12.782 33.356 5.693 0.517 -1.081 H051 OPK 54 OPK H1 H25 H 0 1 N N N -14.466 -13.653 35.599 4.476 -2.731 1.729 H1 OPK 55 OPK H092 H26 H 0 0 N N N -15.304 -12.257 35.476 3.817 -3.457 0.385 H092 OPK 56 OPK H141 H28 H 0 0 N N N -16.118 -13.424 27.687 -1.674 -0.153 0.285 H141 OPK 57 OPK H2 H29 H 0 1 N N N -9.192 -8.526 34.899 8.010 4.284 -0.535 H2 OPK 58 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OPK O27 N25 SING N N 1 OPK O26 N25 DOUB N N 2 OPK N25 C22 SING N N 3 OPK C22 C21 DOUB Y N 4 OPK C22 C23 SING Y N 5 OPK C21 C20 SING Y N 6 OPK C23 C24 DOUB Y N 7 OPK C20 C19 DOUB Y N 8 OPK C24 C19 SING Y N 9 OPK C19 C18 SING N N 10 OPK O17 C18 SING N N 11 OPK O17 C15 SING N N 12 OPK C15 N14 SING N N 13 OPK C15 O16 DOUB N N 14 OPK N14 C13 SING N N 15 OPK C13 C12 SING N N 16 OPK C12 C11 SING N N 17 OPK C11 C10 SING N N 18 OPK C03 C02 SING N N 19 OPK C10 C08 SING N N 20 OPK O30 C28 DOUB N N 21 OPK C08 C06 SING N N 22 OPK C08 N09 SING N N 23 OPK N05 C06 SING N N 24 OPK N05 C04 SING N N 25 OPK C01 C02 SING N N 26 OPK C02 C04 SING N N 27 OPK C28 C04 SING N N 28 OPK C28 O29 SING N N 29 OPK C06 O07 DOUB N N 30 OPK C01 H012 SING N N 31 OPK C01 H011 SING N N 32 OPK C01 H013 SING N N 33 OPK C02 H021 SING N N 34 OPK C03 H031 SING N N 35 OPK C03 H032 SING N N 36 OPK C03 H033 SING N N 37 OPK C04 H041 SING N N 38 OPK C08 H081 SING N N 39 OPK C10 H101 SING N N 40 OPK C10 H102 SING N N 41 OPK C11 H111 SING N N 42 OPK C11 H112 SING N N 43 OPK C12 H121 SING N N 44 OPK C12 H122 SING N N 45 OPK C13 H132 SING N N 46 OPK C13 H131 SING N N 47 OPK C18 H182 SING N N 48 OPK C18 H181 SING N N 49 OPK C20 H201 SING N N 50 OPK C21 H211 SING N N 51 OPK C23 H231 SING N N 52 OPK C24 H241 SING N N 53 OPK N05 H051 SING N N 54 OPK N09 H1 SING N N 55 OPK N09 H092 SING N N 56 OPK N14 H141 SING N N 57 OPK O29 H2 SING N N 58 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OPK InChI InChI 1.03 "InChI=1S/C19H28N4O7/c1-12(2)16(18(25)26)22-17(24)15(20)5-3-4-10-21-19(27)30-11-13-6-8-14(9-7-13)23(28)29/h6-9,12,15-16H,3-5,10-11,20H2,1-2H3,(H,21,27)(H,22,24)(H,25,26)/t15-,16-/m0/s1" OPK InChIKey InChI 1.03 TZRRFQDYTMZNQR-HOTGVXAUSA-N OPK SMILES_CANONICAL CACTVS 3.385 "CC(C)[C@H](NC(=O)[C@@H](N)CCCCNC(=O)OCc1ccc(cc1)[N+]([O-])=O)C(O)=O" OPK SMILES CACTVS 3.385 "CC(C)[CH](NC(=O)[CH](N)CCCCNC(=O)OCc1ccc(cc1)[N+]([O-])=O)C(O)=O" OPK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)[C@@H](C(=O)O)NC(=O)[C@H](CCCCNC(=O)OCc1ccc(cc1)[N+](=O)[O-])N" OPK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)C(C(=O)O)NC(=O)C(CCCCNC(=O)OCc1ccc(cc1)[N+](=O)[O-])N" # _pdbx_chem_comp_identifier.comp_id OPK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-2-azanyl-6-[(4-nitrophenyl)methoxycarbonylamino]hexanoyl]amino]-3-methyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OPK "Create component" 2020-03-26 PDBE OPK "Initial release" 2022-03-09 RCSB ##