data_ORK # _chem_comp.id ORK _chem_comp.name "(2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H34 N3 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-01 _chem_comp.pdbx_modified_date 2021-04-09 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 519.527 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ORK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YI6 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ORK N N1 N 0 1 N N N 35.040 40.924 -4.591 1.571 1.313 -1.296 N ORK 1 ORK C C1 C 0 1 N N N 37.028 43.531 -1.493 1.214 -1.821 1.665 C ORK 2 ORK O O1 O 0 1 N N N 36.153 41.886 -6.746 -0.576 0.195 -2.203 O ORK 3 ORK C1 C2 C 0 1 N N N 36.849 42.016 -1.362 1.367 -2.174 0.184 C1 ORK 4 ORK C10 C3 C 0 1 Y N N 32.206 35.901 -9.081 3.684 2.941 1.542 C10 ORK 5 ORK C11 C4 C 0 1 Y N N 31.553 37.106 -8.951 3.133 3.550 0.431 C11 ORK 6 ORK C12 C5 C 0 1 Y N N 32.003 38.049 -8.042 1.769 3.489 0.215 C12 ORK 7 ORK C13 C6 C 0 1 N N N 34.118 39.550 -9.586 -2.956 0.170 0.340 C13 ORK 8 ORK C14 C7 C 0 1 N N N 33.299 39.270 -11.791 -4.896 -1.204 0.551 C14 ORK 9 ORK C15 C8 C 0 1 Y N N 31.926 39.470 -12.367 -6.387 -1.126 0.343 C15 ORK 10 ORK C16 C9 C 0 1 Y N N 31.484 38.693 -13.425 -7.208 -0.716 1.377 C16 ORK 11 ORK C17 C10 C 0 1 Y N N 30.234 38.901 -13.981 -8.575 -0.640 1.185 C17 ORK 12 ORK C18 C11 C 0 1 Y N N 29.406 39.879 -13.476 -9.120 -0.973 -0.041 C18 ORK 13 ORK C19 C12 C 0 1 Y N N 29.826 40.649 -12.417 -8.299 -1.382 -1.075 C19 ORK 14 ORK C2 C13 C 0 1 N N N 36.559 41.625 0.084 0.472 -3.369 -0.150 C2 ORK 15 ORK C20 C14 C 0 1 Y N N 31.079 40.447 -11.863 -6.932 -1.460 -0.882 C20 ORK 16 ORK C21 C15 C 0 1 N N N 37.431 40.670 -3.968 3.336 -0.308 -0.891 C21 ORK 17 ORK C22 C16 C 0 1 N N S 38.379 38.410 -4.065 5.432 -1.459 -0.425 C22 ORK 18 ORK C23 C17 C 0 1 N N N 38.392 37.605 -2.770 6.388 -0.355 0.030 C23 ORK 19 ORK C24 C18 C 0 1 N N N 38.292 37.444 -5.256 5.800 -2.753 0.255 C24 ORK 20 ORK C3 C19 C 0 1 N N N 35.769 41.479 -2.306 0.958 -0.974 -0.672 C3 ORK 21 ORK C4 C20 C 0 1 N N S 36.144 41.472 -3.789 1.966 0.160 -0.475 C4 ORK 22 ORK C5 C21 C 0 1 N N S 34.538 39.863 -7.195 -0.879 1.434 0.182 C5 ORK 23 ORK C6 C22 C 0 1 N N N 33.702 38.873 -6.370 -0.530 2.753 0.874 C6 ORK 24 ORK C7 C23 C 0 1 Y N N 33.126 37.802 -7.264 0.957 2.819 1.110 C7 ORK 25 ORK C8 C24 C 0 1 Y N N 33.761 36.575 -7.393 1.508 2.209 2.221 C8 ORK 26 ORK C9 C25 C 0 1 Y N N 33.303 35.633 -8.297 2.872 2.270 2.437 C9 ORK 27 ORK N1 N2 N 0 1 N N N 33.895 40.232 -8.448 -2.333 1.326 0.039 N1 ORK 28 ORK N2 N3 N 0 1 N N N 37.266 39.348 -4.068 4.059 -1.094 -0.069 N2 ORK 29 ORK O1 O2 O 0 1 N N N 33.677 42.342 -6.357 -0.498 2.717 -2.284 O1 ORK 30 ORK O2 O3 O 0 1 N N N 34.818 38.567 -9.685 -2.312 -0.784 0.730 O2 ORK 31 ORK O3 O4 O 0 1 N N N 33.405 40.080 -10.593 -4.293 0.071 0.209 O3 ORK 32 ORK O4 O5 O 0 1 N N N 38.529 41.226 -3.989 3.789 0.023 -1.967 O4 ORK 33 ORK O5 O6 O 0 1 N N N 39.357 36.978 -5.701 7.019 -3.284 0.073 O5 ORK 34 ORK O6 O7 O 0 1 N N N 37.150 37.199 -5.710 4.997 -3.312 0.965 O6 ORK 35 ORK P P1 P 0 1 N N N 34.819 41.433 -6.197 -0.101 1.388 -1.466 P ORK 36 ORK H1 H1 H 0 1 N N N 34.194 41.138 -4.102 2.026 1.288 -2.196 H1 ORK 37 ORK H2 H2 H 0 1 N N N 37.811 43.870 -0.798 0.166 -1.617 1.883 H2 ORK 38 ORK H3 H3 H 0 1 N N N 37.321 43.778 -2.524 1.557 -2.656 2.276 H3 ORK 39 ORK H4 H4 H 0 1 N N N 36.080 44.034 -1.251 1.810 -0.937 1.891 H4 ORK 40 ORK H5 H5 H 0 1 N N N 37.801 41.545 -1.648 2.407 -2.431 -0.022 H5 ORK 41 ORK H6 H6 H 0 1 N N N 31.858 35.170 -9.796 4.751 2.984 1.709 H6 ORK 42 ORK H7 H7 H 0 1 N N N 30.686 37.317 -9.560 3.768 4.075 -0.268 H7 ORK 43 ORK H8 H8 H 0 1 N N N 31.475 38.985 -7.937 1.338 3.967 -0.653 H8 ORK 44 ORK H9 H9 H 0 1 N N N 33.447 38.210 -11.539 -4.687 -1.436 1.595 H9 ORK 45 ORK H10 H10 H 0 1 N N N 34.059 39.583 -12.522 -4.481 -1.985 -0.085 H10 ORK 46 ORK H11 H11 H 0 1 N N N 32.122 37.916 -13.820 -6.782 -0.456 2.335 H11 ORK 47 ORK H12 H12 H 0 1 N N N 29.907 38.295 -14.813 -9.217 -0.320 1.992 H12 ORK 48 ORK H13 H13 H 0 1 N N N 28.430 40.041 -13.910 -10.188 -0.914 -0.191 H13 ORK 49 ORK H14 H14 H 0 1 N N N 29.177 41.413 -12.016 -8.725 -1.643 -2.032 H14 ORK 50 ORK H15 H15 H 0 1 N N N 37.349 42.023 0.738 -0.567 -3.113 0.057 H15 ORK 51 ORK H16 H16 H 0 1 N N N 35.587 42.041 0.388 0.581 -3.621 -1.205 H16 ORK 52 ORK H17 H17 H 0 1 N N N 36.531 40.529 0.169 0.763 -4.224 0.460 H17 ORK 53 ORK H18 H18 H 0 1 N N N 31.400 41.056 -11.031 -6.290 -1.776 -1.691 H18 ORK 54 ORK H19 H19 H 0 1 N N N 39.325 38.966 -4.139 5.507 -1.583 -1.505 H19 ORK 55 ORK H20 H20 H 0 1 N N N 38.454 38.291 -1.912 6.314 -0.231 1.110 H20 ORK 56 ORK H21 H21 H 0 1 N N N 37.469 37.011 -2.698 7.410 -0.627 -0.235 H21 ORK 57 ORK H22 H22 H 0 1 N N N 39.262 36.932 -2.765 6.123 0.581 -0.462 H22 ORK 58 ORK H23 H23 H 0 1 N N N 34.871 42.103 -2.185 0.940 -1.266 -1.722 H23 ORK 59 ORK H24 H24 H 0 1 N N N 35.540 40.445 -2.008 -0.034 -0.636 -0.372 H24 ORK 60 ORK H25 H25 H 0 1 N N N 36.336 42.509 -4.102 1.985 0.451 0.575 H25 ORK 61 ORK H26 H26 H 0 1 N N N 35.536 39.440 -7.379 -0.510 0.601 0.781 H26 ORK 62 ORK H27 H27 H 0 1 N N N 32.881 39.414 -5.877 -0.835 3.586 0.242 H27 ORK 63 ORK H28 H28 H 0 1 N N N 34.342 38.404 -5.608 -1.053 2.811 1.829 H28 ORK 64 ORK H29 H29 H 0 1 N N N 34.623 36.353 -6.781 0.873 1.684 2.920 H29 ORK 65 ORK H30 H30 H 0 1 N N N 33.809 34.683 -8.387 3.303 1.793 3.305 H30 ORK 66 ORK H31 H31 H 0 1 N N N 33.271 41.013 -8.463 -2.847 2.087 -0.273 H31 ORK 67 ORK H32 H32 H 0 1 N N N 36.337 38.987 -4.148 3.670 -1.417 0.759 H32 ORK 68 ORK H33 H33 H 0 1 N N N 33.959 43.129 -6.809 -0.155 3.534 -1.896 H33 ORK 69 ORK H34 H34 H 0 1 N N N 39.170 36.408 -6.438 7.208 -4.115 0.530 H34 ORK 70 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ORK C17 C18 DOUB Y N 1 ORK C17 C16 SING Y N 2 ORK C18 C19 SING Y N 3 ORK C16 C15 DOUB Y N 4 ORK C19 C20 DOUB Y N 5 ORK C15 C20 SING Y N 6 ORK C15 C14 SING N N 7 ORK C14 O3 SING N N 8 ORK O3 C13 SING N N 9 ORK O2 C13 DOUB N N 10 ORK C13 N1 SING N N 11 ORK C10 C11 DOUB Y N 12 ORK C10 C9 SING Y N 13 ORK C11 C12 SING Y N 14 ORK N1 C5 SING N N 15 ORK C9 C8 DOUB Y N 16 ORK C12 C7 DOUB Y N 17 ORK C8 C7 SING Y N 18 ORK C7 C6 SING N N 19 ORK C5 C6 SING N N 20 ORK C5 P SING N N 21 ORK O P DOUB N N 22 ORK O1 P SING N N 23 ORK P N SING N N 24 ORK O6 C24 DOUB N N 25 ORK O5 C24 SING N N 26 ORK C24 C22 SING N N 27 ORK N C4 SING N N 28 ORK N2 C22 SING N N 29 ORK N2 C21 SING N N 30 ORK C22 C23 SING N N 31 ORK O4 C21 DOUB N N 32 ORK C21 C4 SING N N 33 ORK C4 C3 SING N N 34 ORK C3 C1 SING N N 35 ORK C C1 SING N N 36 ORK C1 C2 SING N N 37 ORK N H1 SING N N 38 ORK C H2 SING N N 39 ORK C H3 SING N N 40 ORK C H4 SING N N 41 ORK C1 H5 SING N N 42 ORK C10 H6 SING N N 43 ORK C11 H7 SING N N 44 ORK C12 H8 SING N N 45 ORK C14 H9 SING N N 46 ORK C14 H10 SING N N 47 ORK C16 H11 SING N N 48 ORK C17 H12 SING N N 49 ORK C18 H13 SING N N 50 ORK C19 H14 SING N N 51 ORK C2 H15 SING N N 52 ORK C2 H16 SING N N 53 ORK C2 H17 SING N N 54 ORK C20 H18 SING N N 55 ORK C22 H19 SING N N 56 ORK C23 H20 SING N N 57 ORK C23 H21 SING N N 58 ORK C23 H22 SING N N 59 ORK C3 H23 SING N N 60 ORK C3 H24 SING N N 61 ORK C4 H25 SING N N 62 ORK C5 H26 SING N N 63 ORK C6 H27 SING N N 64 ORK C6 H28 SING N N 65 ORK C8 H29 SING N N 66 ORK C9 H30 SING N N 67 ORK N1 H31 SING N N 68 ORK N2 H32 SING N N 69 ORK O1 H33 SING N N 70 ORK O5 H34 SING N N 71 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ORK InChI InChI 1.03 "InChI=1S/C25H34N3O7P/c1-17(2)14-21(23(29)26-18(3)24(30)31)28-36(33,34)22(15-19-10-6-4-7-11-19)27-25(32)35-16-20-12-8-5-9-13-20/h4-13,17-18,21-22H,14-16H2,1-3H3,(H,26,29)(H,27,32)(H,30,31)(H2,28,33,34)/t18-,21-,22-/m0/s1" ORK InChIKey InChI 1.03 PREBTZMCCRSQJI-NYVOZVTQSA-N ORK SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](N[P](O)(=O)[C@@H](Cc1ccccc1)NC(=O)OCc2ccccc2)C(=O)N[C@@H](C)C(O)=O" ORK SMILES CACTVS 3.385 "CC(C)C[CH](N[P](O)(=O)[CH](Cc1ccccc1)NC(=O)OCc2ccccc2)C(=O)N[CH](C)C(O)=O" ORK SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(=O)O)NC(=O)[C@H](CC(C)C)NP(=O)([C@@H](Cc1ccccc1)NC(=O)OCc2ccccc2)O" ORK SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(C)C(=O)O)NP(=O)(C(Cc1ccccc1)NC(=O)OCc2ccccc2)O" # _pdbx_chem_comp_identifier.comp_id ORK _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "(2~{S})-2-[[(2~{S})-4-methyl-2-[[oxidanyl-[(1~{S})-2-phenyl-1-(phenylmethoxycarbonylamino)ethyl]phosphoryl]amino]pentanoyl]amino]propanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ORK "Create component" 2020-04-01 PDBE ORK "Initial release" 2021-04-14 RCSB ##