data_ORP # _chem_comp.id ORP _chem_comp.name 2-DEOXY-5-PHOSPHONO-RIBOSE _chem_comp.type SACCHARIDE _chem_comp.pdbx_type ATOMS _chem_comp.formula "C5 H11 O7 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces D1P _chem_comp.formula_weight 214.110 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ORP _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1SJK _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ORP C1 C1 C 0 1 N N S 0.293 -4.309 14.240 1.067 -0.392 -2.790 C1 ORP 1 ORP O1 O1 O 0 1 N N N 0.685 -2.953 14.307 2.032 0.149 -3.694 O1 ORP 2 ORP C2 C2 C 0 1 N N N -1.235 -4.510 14.300 -0.345 -0.352 -3.424 C2 ORP 3 ORP C3 C3 C 0 1 N N S -1.487 -5.763 15.152 -1.238 -0.338 -2.153 C3 ORP 4 ORP O3 O3 O 0 1 N N N -2.619 -5.432 15.957 -2.484 0.310 -2.414 O3 ORP 5 ORP C4 C4 C 0 1 N N R -0.193 -5.849 15.937 -0.384 0.479 -1.161 C4 ORP 6 ORP O4 O4 O 0 1 N N N 0.765 -4.921 15.399 0.975 0.424 -1.611 O4 ORP 7 ORP C5 C5 C 0 1 N N N 0.408 -7.227 16.046 -0.492 -0.127 0.238 C5 ORP 8 ORP O5 O5 O 0 1 N N N 1.832 -7.173 16.290 0.300 0.635 1.150 O5 ORP 9 ORP P P P 0 1 N N N 2.493 -6.605 17.651 0.140 -0.055 2.596 P ORP 10 ORP O1P O1P O 0 1 N N N 1.520 -5.740 18.373 0.617 -1.454 2.529 O1P ORP 11 ORP O2P O2P O 0 1 N N N 3.144 -7.736 18.337 1.012 0.757 3.678 O2P ORP 12 ORP O3P O3P O 0 1 N Y N 3.665 -5.642 17.062 -1.408 -0.035 3.032 O3P ORP 13 ORP H1 H1 H 0 1 N N N 0.778 -4.732 13.378 1.333 -1.414 -2.522 H1 ORP 14 ORP HO1 HO1 H 0 1 N N N 0.333 -2.604 14.805 2.886 0.120 -3.241 HO1 ORP 15 ORP H21 1H2 H 0 1 N N N -1.626 -3.648 14.772 -0.486 0.554 -4.013 H21 ORP 16 ORP H22 2H2 H 0 1 N N N -1.641 -4.534 13.321 -0.531 -1.241 -4.026 H22 ORP 17 ORP H3 H3 H 0 1 N N N -1.626 -6.741 14.719 -1.400 -1.351 -1.783 H3 ORP 18 ORP HO3 HO3 H 0 1 N N N -2.774 -6.206 16.483 -2.927 -0.201 -3.104 HO3 ORP 19 ORP H4 H4 H 0 1 N N N -0.455 -5.451 16.902 -0.727 1.513 -1.143 H4 ORP 20 ORP H51 1H5 H 0 1 N N N -0.061 -7.753 16.843 -1.533 -0.112 0.562 H51 ORP 21 ORP H52 2H5 H 0 1 N N N 0.242 -7.757 15.118 -0.133 -1.156 0.217 H52 ORP 22 ORP HOP2 2HOP H 0 0 N N N 3.532 -7.402 19.137 0.889 0.312 4.528 HOP2 ORP 23 ORP HOP3 3HOP H 0 0 N N N 4.053 -5.308 17.862 -1.678 0.892 3.063 HOP3 ORP 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ORP C1 O1 SING N N 1 ORP C1 C2 SING N N 2 ORP C1 O4 SING N N 3 ORP C1 H1 SING N N 4 ORP O1 HO1 SING N N 5 ORP C2 C3 SING N N 6 ORP C2 H21 SING N N 7 ORP C2 H22 SING N N 8 ORP C3 O3 SING N N 9 ORP C3 C4 SING N N 10 ORP C3 H3 SING N N 11 ORP O3 HO3 SING N N 12 ORP C4 O4 SING N N 13 ORP C4 C5 SING N N 14 ORP C4 H4 SING N N 15 ORP C5 O5 SING N N 16 ORP C5 H51 SING N N 17 ORP C5 H52 SING N N 18 ORP O5 P SING N N 19 ORP P O1P DOUB N N 20 ORP P O2P SING N N 21 ORP P O3P SING N N 22 ORP O2P HOP2 SING N N 23 ORP O3P HOP3 SING N N 24 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ORP SMILES ACDLabs 10.04 "O=P(OCC1OC(O)CC1O)(O)O" ORP SMILES_CANONICAL CACTVS 3.341 "O[C@@H]1C[C@H](O)[C@@H](CO[P](O)(O)=O)O1" ORP SMILES CACTVS 3.341 "O[CH]1C[CH](O)[CH](CO[P](O)(O)=O)O1" ORP SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C1[C@@H]([C@H](O[C@@H]1O)COP(=O)(O)O)O" ORP SMILES "OpenEye OEToolkits" 1.5.0 "C1C(C(OC1O)COP(=O)(O)O)O" ORP InChI InChI 1.03 "InChI=1S/C5H11O7P/c6-3-1-5(7)12-4(3)2-11-13(8,9)10/h3-7H,1-2H2,(H2,8,9,10)/t3-,4+,5-/m0/s1" ORP InChIKey InChI 1.03 KKZFLSZAWCYPOC-LMVFSUKVSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier ORP "SYSTEMATIC NAME" ACDLabs 10.04 2-deoxy-5-O-phosphono-alpha-D-erythro-pentofuranose ORP "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5S)-3,5-dihydroxyoxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ORP "Create component" 1999-07-08 RCSB ORP "Modify descriptor" 2011-06-04 RCSB #