data_ORW # _chem_comp.id ORW _chem_comp.name "1-[(2~{S})-1-[[iminomethyl(methyl)amino]-methyl-amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-(phenylmethyl)urea" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H27 N5 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-01 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 333.429 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ORW _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YI7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal ORW OAW O1 O 0 1 N N N N N N -21.769 12.469 -22.253 -0.893 -1.257 1.268 OAW ORW 1 ORW CAN C1 C 0 1 N N N N N N -21.743 11.258 -22.653 -1.000 -0.416 0.397 CAN ORW 2 ORW N N1 N 0 1 N N N N N N -20.822 10.321 -22.156 0.090 -0.005 -0.281 N ORW 3 ORW CA C2 C 0 1 N N S N N N -19.817 10.811 -21.230 1.404 -0.572 0.032 CA ORW 4 ORW CB C3 C 0 1 N N N N N N -18.872 9.735 -20.682 1.594 -1.877 -0.743 CB ORW 5 ORW CG C4 C 0 1 N N N N N N -19.531 8.829 -19.628 0.602 -2.923 -0.232 CG ORW 6 ORW CD2 C5 C 0 1 N N N N N N -19.946 9.555 -18.335 0.706 -4.186 -1.090 CD2 ORW 7 ORW CD1 C6 C 0 1 N N N N N N -18.584 7.678 -19.271 0.926 -3.266 1.223 CD1 ORW 8 ORW C C7 C 0 1 N N N N N N -18.926 11.854 -21.929 2.480 0.407 -0.360 C ORW 9 ORW O O2 O 0 1 N N N N N N -18.473 11.638 -23.015 2.232 1.299 -1.144 O ORW 10 ORW NAE N2 N 0 1 N N N N N N -18.656 13.033 -21.284 3.718 0.292 0.160 NAE ORW 11 ORW CAF C8 C 0 1 N N N N N N -19.152 13.448 -19.968 4.045 -0.842 1.028 CAF ORW 12 ORW NAC N3 N 0 1 N N N N N N -17.953 14.021 -21.941 4.692 1.257 -0.130 NAC ORW 13 ORW CAD C9 C 0 1 N N N N N N -18.736 14.938 -22.745 5.637 1.037 -1.227 CAD ORW 14 ORW CAB C10 C 0 1 N N N N N N -16.613 14.131 -21.691 4.760 2.406 0.613 CAB ORW 15 ORW NAA N4 N 0 1 N N N N N N -15.836 15.021 -22.070 5.659 3.297 0.346 NAA ORW 16 ORW NAO N5 N 0 1 N N N N N N -22.534 10.777 -23.665 -2.210 0.102 0.105 NAO ORW 17 ORW CAP C11 C 0 1 N N N N N N -23.414 11.617 -24.489 -3.396 -0.349 0.838 CAP ORW 18 ORW CAQ C12 C 0 1 Y N N N N N -24.771 11.974 -23.882 -4.611 0.379 0.323 CAQ ORW 19 ORW CAV C13 C 0 1 Y N N N N N -25.441 13.107 -24.379 -4.992 1.578 0.896 CAV ORW 20 ORW CAU C14 C 0 1 Y N N N N N -26.684 13.485 -23.856 -6.107 2.246 0.424 CAU ORW 21 ORW CAT C15 C 0 1 Y N N N N N -27.270 12.730 -22.814 -6.840 1.714 -0.620 CAT ORW 22 ORW CAS C16 C 0 1 Y N N N N N -26.607 11.593 -22.288 -6.459 0.516 -1.193 CAS ORW 23 ORW CAR C17 C 0 1 Y N N N N N -25.360 11.229 -22.837 -5.342 -0.150 -0.724 CAR ORW 24 ORW H1 H1 H 0 1 N N N N N N -20.857 9.359 -22.428 0.004 0.666 -0.976 H1 ORW 25 ORW H2 H2 H 0 1 N N N N N N -20.314 11.299 -20.379 1.467 -0.772 1.102 H2 ORW 26 ORW H3 H3 H 0 1 N N N N N N -18.533 9.108 -21.520 1.419 -1.698 -1.804 H3 ORW 27 ORW H4 H4 H 0 1 N N N N N N -18.005 10.232 -20.223 2.612 -2.240 -0.599 H4 ORW 28 ORW H5 H5 H 0 1 N N N N N N -20.437 8.395 -20.076 -0.411 -2.524 -0.294 H5 ORW 29 ORW H6 H6 H 0 1 N N N N N N -20.406 8.836 -17.641 1.718 -4.585 -1.028 H6 ORW 30 ORW H7 H7 H 0 1 N N N N N N -19.058 10.002 -17.864 -0.001 -4.932 -0.726 H7 ORW 31 ORW H8 H8 H 0 1 N N N N N N -20.671 10.347 -18.576 0.475 -3.942 -2.126 H8 ORW 32 ORW H9 H9 H 0 1 N N N N N N -19.058 7.032 -18.517 0.852 -2.366 1.834 H9 ORW 33 ORW H10 H10 H 0 1 N N N N N N -18.367 7.089 -20.174 0.219 -4.012 1.587 H10 ORW 34 ORW H11 H11 H 0 1 N N N N N N -17.647 8.087 -18.866 1.939 -3.665 1.285 H11 ORW 35 ORW H12 H12 H 0 1 N N N N N N -19.700 12.615 -19.503 4.421 -1.666 0.422 H12 ORW 36 ORW H13 H13 H 0 1 N N N N N N -18.303 13.730 -19.328 4.809 -0.541 1.746 H13 ORW 37 ORW H14 H14 H 0 1 N N N N N N -19.825 14.310 -20.085 3.150 -1.161 1.562 H14 ORW 38 ORW H15 H15 H 0 1 N N N N N N -19.783 14.601 -22.772 6.521 0.523 -0.848 H15 ORW 39 ORW H16 H16 H 0 1 N N N N N N -18.686 15.945 -22.305 5.165 0.427 -1.997 H16 ORW 40 ORW H17 H17 H 0 1 N N N N N N -18.333 14.964 -23.768 5.930 1.997 -1.652 H17 ORW 41 ORW H18 H18 H 0 1 N N N N N N -16.178 13.347 -21.090 4.063 2.568 1.422 H18 ORW 42 ORW H19 H19 H 0 1 N N N N N N -14.902 14.865 -21.748 5.707 4.110 0.872 H19 ORW 43 ORW H20 H20 H 0 1 N N N N N N -22.510 9.795 -23.853 -2.296 0.773 -0.590 H20 ORW 44 ORW H21 H21 H 0 1 N N N N N N -23.599 11.084 -25.433 -3.526 -1.422 0.693 H21 ORW 45 ORW H22 H22 H 0 1 N N N N N N -22.882 12.557 -24.697 -3.269 -0.139 1.900 H22 ORW 46 ORW H23 H23 H 0 1 N N N N N N -24.993 13.690 -25.170 -4.419 1.993 1.711 H23 ORW 47 ORW H24 H24 H 0 1 N N N N N N -27.194 14.352 -24.248 -6.404 3.183 0.871 H24 ORW 48 ORW H25 H25 H 0 1 N N N N N N -28.230 13.022 -22.416 -7.711 2.236 -0.988 H25 ORW 49 ORW H26 H26 H 0 1 N N N N N N -27.046 11.019 -21.486 -7.032 0.100 -2.009 H26 ORW 50 ORW H27 H27 H 0 1 N N N N N N -24.845 10.362 -22.450 -5.042 -1.085 -1.174 H27 ORW 51 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal ORW CAP CAQ SING N N 1 ORW CAP NAO SING N N 2 ORW CAV CAQ DOUB Y N 3 ORW CAV CAU SING Y N 4 ORW CAQ CAR SING Y N 5 ORW CAU CAT DOUB Y N 6 ORW NAO CAN SING N N 7 ORW O C DOUB N N 8 ORW CAR CAS DOUB Y N 9 ORW CAT CAS SING Y N 10 ORW CAD NAC SING N N 11 ORW CAN OAW DOUB N N 12 ORW CAN N SING N N 13 ORW N CA SING N N 14 ORW NAA CAB DOUB N N 15 ORW NAC CAB SING N N 16 ORW NAC NAE SING N N 17 ORW C NAE SING N N 18 ORW C CA SING N N 19 ORW NAE CAF SING N N 20 ORW CA CB SING N N 21 ORW CB CG SING N N 22 ORW CG CD1 SING N N 23 ORW CG CD2 SING N N 24 ORW N H1 SING N N 25 ORW CA H2 SING N N 26 ORW CB H3 SING N N 27 ORW CB H4 SING N N 28 ORW CG H5 SING N N 29 ORW CD2 H6 SING N N 30 ORW CD2 H7 SING N N 31 ORW CD2 H8 SING N N 32 ORW CD1 H9 SING N N 33 ORW CD1 H10 SING N N 34 ORW CD1 H11 SING N N 35 ORW CAF H12 SING N N 36 ORW CAF H13 SING N N 37 ORW CAF H14 SING N N 38 ORW CAD H15 SING N N 39 ORW CAD H16 SING N N 40 ORW CAD H17 SING N N 41 ORW CAB H18 SING N N 42 ORW NAA H19 SING N N 43 ORW NAO H20 SING N N 44 ORW CAP H21 SING N N 45 ORW CAP H22 SING N N 46 ORW CAV H23 SING N N 47 ORW CAU H24 SING N N 48 ORW CAT H25 SING N N 49 ORW CAS H26 SING N N 50 ORW CAR H27 SING N N 51 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor ORW InChI InChI 1.03 "InChI=1S/C17H27N5O2/c1-13(2)10-15(16(23)22(4)21(3)12-18)20-17(24)19-11-14-8-6-5-7-9-14/h5-9,12-13,15,18H,10-11H2,1-4H3,(H2,19,20,24)/b18-12-/t15-/m0/s1" ORW InChIKey InChI 1.03 DZXGVGCCLHWTMQ-BRYHAGSVSA-N ORW SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)NCc1ccccc1)C(=O)N(C)N(C)C=N" ORW SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)NCc1ccccc1)C(=O)N(C)N(C)C=N" ORW SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "[H]/N=C\N(C)N(C)C(=O)[C@H](CC(C)C)NC(=O)NCc1ccccc1" ORW SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)N(C)N(C)C=N)NC(=O)NCc1ccccc1" # _pdbx_chem_comp_identifier.comp_id ORW _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "1-[(2~{S})-1-[[iminomethyl(methyl)amino]-methyl-amino]-4-methyl-1-oxidanylidene-pentan-2-yl]-3-(phenylmethyl)urea" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site ORW "Create component" 2020-04-01 PDBE ORW "Initial release" 2020-12-16 RCSB ORW "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id ORW _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom CAB _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? _pdbx_chem_comp_pcm.first_instance_model_db_code 6YI7 #