data_OS3 # _chem_comp.id OS3 _chem_comp.name "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(pent-4-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C17 H23 N5 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2018-07-03 _chem_comp.pdbx_modified_date 2019-03-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 345.462 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OS3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6DYV _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OS3 N6 N1 N 0 1 N N N 4.640 -23.334 -38.586 7.497 0.055 0.065 N6 OS3 1 OS3 C6 C1 C 0 1 Y N N 4.234 -22.086 -38.852 6.256 0.608 -0.205 C6 OS3 2 OS3 N1 N2 N 0 1 Y N N 5.060 -21.115 -39.324 6.114 1.523 -1.159 N1 OS3 3 OS3 C2 C2 C 0 1 Y N N 4.630 -19.852 -39.560 4.935 2.055 -1.431 C2 OS3 4 OS3 N3 N3 N 0 1 Y N N 3.346 -19.484 -39.395 3.843 1.716 -0.782 N3 OS3 5 OS3 C5 C3 C 0 1 Y N N 2.821 -21.772 -38.645 5.124 0.211 0.516 C5 OS3 6 OS3 C4 C4 C 0 1 Y N N 2.460 -20.411 -38.945 3.891 0.804 0.193 C4 OS3 7 OS3 N7 N4 N 0 1 Y N N 1.726 -22.438 -38.246 4.894 -0.682 1.536 N7 OS3 8 OS3 C8 C5 C 0 1 Y N N 0.664 -21.567 -38.245 3.572 -0.672 1.870 C8 OS3 9 OS3 C9 C6 C 0 1 Y N N 1.033 -20.298 -38.683 2.911 0.206 1.093 C9 OS3 10 OS3 C10 C7 C 0 1 N N N 0.133 -19.079 -38.772 1.436 0.513 1.142 C10 OS3 11 OS3 N1A N5 N 0 1 N N N -0.347 -18.572 -40.068 0.748 -0.216 0.068 N1A OS3 12 OS3 C2A C8 C 0 1 N N N 0.680 -17.847 -40.860 0.732 -1.676 0.340 C2A OS3 13 OS3 C3A C9 C 0 1 N N R 0.028 -17.828 -42.213 -0.429 -2.220 -0.519 C3A OS3 14 OS3 O3A O1 O 0 1 N N N -1.038 -16.855 -42.237 0.063 -2.704 -1.770 O3A OS3 15 OS3 C1A C10 C 0 1 N N N -0.952 -19.612 -40.943 -0.688 0.159 0.004 C1A OS3 16 OS3 C4A C11 C 0 1 N N S -0.498 -19.246 -42.362 -1.363 -1.012 -0.740 C4A OS3 17 OS3 C5A C12 C 0 1 N N N 0.554 -20.253 -42.843 -2.745 -1.294 -0.146 C5A OS3 18 OS3 S5A S1 S 0 1 N N N 1.008 -20.078 -44.556 -3.866 0.075 -0.546 S5A OS3 19 OS3 C20 C13 C 0 1 N N N -0.285 -20.949 -45.371 -5.424 -0.433 0.230 C20 OS3 20 OS3 C21 C14 C 0 1 N N N 0.076 -21.193 -46.826 -6.491 0.635 -0.021 C21 OS3 21 OS3 C22 C15 C 0 1 N N N -0.892 -22.219 -47.414 -7.806 0.206 0.633 C22 OS3 22 OS3 C23 C16 C 0 1 N N N -2.195 -21.595 -47.642 -8.832 1.233 0.392 C23 OS3 23 OS3 C24 C17 C 0 1 N N N -3.292 -20.987 -47.887 -9.651 2.053 0.199 C24 OS3 24 OS3 H1 H1 H 0 1 N N N 5.616 -23.418 -38.788 7.589 -0.615 0.761 H1 OS3 25 OS3 H2 H2 H 0 1 N N N 4.481 -23.537 -37.620 8.274 0.335 -0.444 H2 OS3 26 OS3 H3 H3 H 0 1 N N N 5.344 -19.113 -39.893 4.867 2.796 -2.214 H3 OS3 27 OS3 H4 H4 H 0 1 N N N 1.690 -23.405 -37.992 5.571 -1.237 1.954 H4 OS3 28 OS3 H5 H5 H 0 1 N N N -0.337 -21.834 -37.941 3.122 -1.280 2.640 H5 OS3 29 OS3 H6 H6 H 0 1 N N N 0.683 -18.252 -38.299 1.033 0.204 2.106 H6 OS3 30 OS3 H7 H7 H 0 1 N N N -0.763 -19.311 -38.178 1.283 1.584 1.010 H7 OS3 31 OS3 H9 H9 H 0 1 N N N 1.636 -18.391 -40.879 1.675 -2.130 0.036 H9 OS3 32 OS3 H10 H10 H 0 1 N N N 0.845 -16.830 -40.475 0.545 -1.863 1.398 H10 OS3 33 OS3 H11 H11 H 0 1 N N N 0.774 -17.619 -42.993 -0.955 -3.013 0.013 H11 OS3 34 OS3 H12 H12 H 0 1 N N N -0.674 -15.983 -42.142 0.690 -3.436 -1.689 H12 OS3 35 OS3 H13 H13 H 0 1 N N N -2.049 -19.589 -40.870 -1.099 0.259 1.009 H13 OS3 36 OS3 H14 H14 H 0 1 N N N -0.587 -20.612 -40.665 -0.814 1.088 -0.551 H14 OS3 37 OS3 H15 H15 H 0 1 N N N -1.362 -19.256 -43.043 -1.447 -0.788 -1.803 H15 OS3 38 OS3 H16 H16 H 0 1 N N N 0.153 -21.267 -42.695 -3.139 -2.220 -0.564 H16 OS3 39 OS3 H17 H17 H 0 1 N N N 1.459 -20.124 -42.232 -2.662 -1.390 0.937 H17 OS3 40 OS3 H18 H18 H 0 1 N N N -1.209 -20.355 -45.322 -5.751 -1.381 -0.198 H18 OS3 41 OS3 H19 H19 H 0 1 N N N -0.443 -21.915 -44.870 -5.274 -0.551 1.303 H19 OS3 42 OS3 H20 H20 H 0 1 N N N 1.105 -21.577 -46.891 -6.164 1.583 0.407 H20 OS3 43 OS3 H21 H21 H 0 1 N N N 0.000 -20.250 -47.388 -6.641 0.753 -1.094 H21 OS3 44 OS3 H22 H22 H 0 1 N N N -1.006 -23.058 -46.712 -8.133 -0.742 0.206 H22 OS3 45 OS3 H23 H23 H 0 1 N N N -0.493 -22.592 -48.369 -7.656 0.088 1.707 H23 OS3 46 OS3 H24 H24 H 0 1 N N N -4.202 -20.483 -48.090 -10.383 2.785 0.027 H24 OS3 47 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OS3 C24 C23 TRIP N N 1 OS3 C23 C22 SING N N 2 OS3 C22 C21 SING N N 3 OS3 C21 C20 SING N N 4 OS3 C20 S5A SING N N 5 OS3 S5A C5A SING N N 6 OS3 C5A C4A SING N N 7 OS3 C4A C3A SING N N 8 OS3 C4A C1A SING N N 9 OS3 O3A C3A SING N N 10 OS3 C3A C2A SING N N 11 OS3 C1A N1A SING N N 12 OS3 C2A N1A SING N N 13 OS3 N1A C10 SING N N 14 OS3 C2 N3 DOUB Y N 15 OS3 C2 N1 SING Y N 16 OS3 N3 C4 SING Y N 17 OS3 N1 C6 DOUB Y N 18 OS3 C4 C9 SING Y N 19 OS3 C4 C5 DOUB Y N 20 OS3 C6 C5 SING Y N 21 OS3 C6 N6 SING N N 22 OS3 C10 C9 SING N N 23 OS3 C9 C8 DOUB Y N 24 OS3 C5 N7 SING Y N 25 OS3 N7 C8 SING Y N 26 OS3 N6 H1 SING N N 27 OS3 N6 H2 SING N N 28 OS3 C2 H3 SING N N 29 OS3 N7 H4 SING N N 30 OS3 C8 H5 SING N N 31 OS3 C10 H6 SING N N 32 OS3 C10 H7 SING N N 33 OS3 C2A H9 SING N N 34 OS3 C2A H10 SING N N 35 OS3 C3A H11 SING N N 36 OS3 O3A H12 SING N N 37 OS3 C1A H13 SING N N 38 OS3 C1A H14 SING N N 39 OS3 C4A H15 SING N N 40 OS3 C5A H16 SING N N 41 OS3 C5A H17 SING N N 42 OS3 C20 H18 SING N N 43 OS3 C20 H19 SING N N 44 OS3 C21 H20 SING N N 45 OS3 C21 H21 SING N N 46 OS3 C22 H22 SING N N 47 OS3 C22 H23 SING N N 48 OS3 C24 H24 SING N N 49 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OS3 SMILES ACDLabs 12.01 "Nc1c2ncc(c2ncn1)CN3CC(O)C(C3)CSCCCC#C" OS3 InChI InChI 1.03 "InChI=1S/C17H23N5OS/c1-2-3-4-5-24-10-13-8-22(9-14(13)23)7-12-6-19-16-15(12)20-11-21-17(16)18/h1,6,11,13-14,19,23H,3-5,7-10H2,(H2,18,20,21)/t13-,14+/m1/s1" OS3 InChIKey InChI 1.03 QRFSYYUFBJRRLL-KGLIPLIRSA-N OS3 SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2c(CN3C[C@H](O)[C@@H](CSCCCC#C)C3)c[nH]c12" OS3 SMILES CACTVS 3.385 "Nc1ncnc2c(CN3C[CH](O)[CH](CSCCCC#C)C3)c[nH]c12" OS3 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.6 "C#CCCCSC[C@H]1CN(C[C@@H]1O)Cc2c[nH]c3c2ncnc3N" OS3 SMILES "OpenEye OEToolkits" 2.0.6 "C#CCCCSCC1CN(CC1O)Cc2c[nH]c3c2ncnc3N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OS3 "SYSTEMATIC NAME" ACDLabs 12.01 "(3R,4S)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-{[(pent-4-yn-1-yl)sulfanyl]methyl}pyrrolidin-3-ol" OS3 "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.6 "(3~{R},4~{S})-1-[(4-azanyl-5~{H}-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-(pent-4-ynylsulfanylmethyl)pyrrolidin-3-ol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OS3 "Create component" 2018-07-03 RCSB OS3 "Initial release" 2019-03-20 RCSB ##