data_OVD # _chem_comp.id OVD _chem_comp.name "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(1~{H}-1,2,3-triazol-4-ylmethoxy)oxan-2-yl]oxy-4-oxidanyl-2-propoxy-oxan-3-yl]ethanamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H34 N4 O11" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-21 _chem_comp.pdbx_modified_date 2023-09-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 506.504 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OVD _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B0W _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OVD C4 C1 C 0 1 N N S -1.880 31.042 17.470 1.235 -0.252 0.102 C4 OVD 1 OVD C5 C2 C 0 1 N N R -3.222 31.472 18.025 1.853 -1.650 0.024 C5 OVD 2 OVD C6 C3 C 0 1 N N N -3.752 30.474 19.040 1.054 -2.507 -0.960 C6 OVD 3 OVD C7 C4 C 0 1 N N N -0.171 35.402 16.194 5.481 2.007 1.036 C7 OVD 4 OVD C8 C5 C 0 1 N N N -0.057 36.387 14.971 6.334 2.797 1.995 C8 OVD 5 OVD N2 N1 N 0 1 N N N -1.108 34.439 16.072 4.350 1.416 1.469 N2 OVD 6 OVD C3 C6 C 0 1 N N R -1.488 32.074 16.444 2.076 0.618 1.043 C3 OVD 7 OVD C1 C7 C 0 1 N N R -2.679 33.754 17.809 4.051 -0.785 0.442 C1 OVD 8 OVD C2 C8 C 0 1 N N R -1.372 33.439 17.119 3.521 0.648 0.537 C2 OVD 9 OVD CAF C9 C 0 1 N N N -2.827 36.097 17.795 6.011 -2.050 -0.108 CAF OVD 10 OVD CAM C10 C 0 1 N N N -3.608 36.987 18.672 7.421 -1.913 -0.686 CAM OVD 11 OVD CAO C11 C 0 1 N N N 2.211 28.120 18.305 -1.598 3.543 -1.660 CAO OVD 12 OVD CAP C12 C 0 1 N N R -1.754 27.463 16.866 -2.487 -0.166 0.271 CAP OVD 13 OVD CAQ C13 C 0 1 N N S -1.042 26.285 17.488 -3.551 0.371 -0.692 CAQ OVD 14 OVD CAR C14 C 0 1 N N S 0.450 26.573 17.422 -3.299 1.862 -0.934 CAR OVD 15 OVD CAS C15 C 0 1 N N R 0.705 27.913 18.139 -1.879 2.051 -1.473 CAS OVD 16 OVD CAU C16 C 0 1 N N S -1.347 28.758 17.531 -1.099 0.101 -0.315 CAU OVD 17 OVD CAY C17 C 0 1 N N N -3.608 38.460 18.479 8.097 -3.285 -0.713 CAY OVD 18 OVD CAZ C18 C 0 1 N N N -0.680 24.082 17.359 -5.460 -1.059 -0.451 CAZ OVD 19 OVD CBA C19 C 0 1 Y N N -1.286 22.863 16.590 -6.816 -1.142 0.202 CBA OVD 20 OVD CBB C20 C 0 1 Y N N -2.571 22.530 16.569 -7.397 -0.203 0.984 CBB OVD 21 OVD NBC N2 N 0 1 Y N N -2.633 21.456 15.785 -8.602 -0.704 1.342 NBC OVD 22 OVD NBD N3 N 0 1 Y N N -1.455 21.191 15.367 -8.729 -1.868 0.808 NBD OVD 23 OVD NBE N4 N 0 1 Y N N -0.635 22.000 15.810 -7.684 -2.156 0.117 NBE OVD 24 OVD O1 O1 O 0 1 N N N -2.542 34.934 18.614 5.380 -0.768 -0.083 O1 OVD 25 OVD O3 O2 O 0 1 N N N -0.240 31.761 15.855 1.549 1.946 1.065 O3 OVD 26 OVD O4 O3 O 0 1 N N N -2.025 29.779 16.838 -0.100 -0.347 0.604 O4 OVD 27 OVD O5 O4 O 0 1 N N N -3.066 32.715 18.719 3.207 -1.547 -0.423 O5 OVD 28 OVD O6 O5 O 0 1 N N N -2.848 30.432 20.142 1.557 -3.845 -0.944 O6 OVD 29 OVD O7 O6 O 0 1 N N N 0.546 35.523 17.194 5.812 1.903 -0.126 O7 OVD 30 OVD OAN O7 O 0 1 N N N -3.164 27.283 17.000 -2.669 -1.572 0.447 OAN OVD 31 OVD OAT O8 O 0 1 N N N 0.089 28.982 17.413 -0.941 1.503 -0.544 OAT OVD 32 OVD OAV O9 O 0 1 N N N 0.849 26.591 15.996 -3.442 2.576 0.296 OAV OVD 33 OVD OAW O10 O 0 1 N N N 2.479 29.473 18.707 -0.318 3.714 -2.272 OAW OVD 34 OVD OAX O11 O 0 1 N N N -1.387 25.129 16.756 -4.848 0.190 -0.120 OAX OVD 35 OVD H4 H1 H 0 1 N N N -1.132 31.005 18.276 1.220 0.196 -0.891 H4 OVD 36 OVD H5 H2 H 0 1 N N N -3.944 31.575 17.201 1.831 -2.113 1.011 H5 OVD 37 OVD H62 H3 H 0 1 N N N -4.747 30.790 19.387 0.004 -2.510 -0.669 H62 OVD 38 OVD H61 H4 H 0 1 N N N -3.823 29.478 18.579 1.152 -2.094 -1.963 H61 OVD 39 OVD H82 H5 H 0 1 N N N 0.722 37.136 15.174 7.200 3.197 1.467 H82 OVD 40 OVD H81 H6 H 0 1 N N N 0.207 35.819 14.067 5.750 3.618 2.409 H81 OVD 41 OVD H83 H7 H 0 1 N N N -1.021 36.894 14.817 6.670 2.146 2.803 H83 OVD 42 OVD H22 H8 H 0 1 N N N -1.648 34.403 15.231 4.085 1.499 2.399 H22 OVD 43 OVD H31 H9 H 0 1 N N N -2.271 32.127 15.673 2.050 0.197 2.048 H31 OVD 44 OVD H1 H10 H 0 1 N N N -3.460 33.903 17.049 4.057 -1.237 1.434 H1 OVD 45 OVD H21 H11 H 0 1 N N N -0.553 33.423 17.853 3.553 1.115 -0.448 H21 OVD 46 OVD HAF H12 H 0 1 N N N -1.894 36.586 17.477 5.428 -2.730 -0.730 HAF OVD 47 OVD H63 H13 H 0 1 N N N -3.413 35.813 16.908 6.070 -2.446 0.905 H63 OVD 48 OVD HAM H14 H 0 1 N N N -4.656 36.663 18.590 7.362 -1.517 -1.700 HAM OVD 49 OVD H2 H15 H 0 1 N N N -3.248 36.808 19.696 8.004 -1.233 -0.064 H2 OVD 50 OVD HAO H16 H 0 1 N N N 2.591 27.430 19.072 -2.367 3.980 -2.298 HAO OVD 51 OVD H64 H17 H 0 1 N N N 2.714 27.918 17.348 -1.607 4.039 -0.690 H64 OVD 52 OVD HAP H18 H 0 1 N N N -1.485 27.515 15.801 -2.581 0.337 1.234 HAP OVD 53 OVD HAQ H19 H 0 1 N N N -1.347 26.187 18.540 -3.491 -0.167 -1.638 HAQ OVD 54 OVD HAR H20 H 0 1 N N N 0.995 25.777 17.950 -4.018 2.240 -1.661 HAR OVD 55 OVD HAS H21 H 0 1 N N N 0.258 27.850 19.142 -1.783 1.540 -2.431 HAS OVD 56 OVD HAU H22 H 0 1 N N N -1.643 28.736 18.590 -0.992 -0.435 -1.258 HAU OVD 57 OVD H3 H23 H 0 1 N N N -4.252 38.930 19.237 7.514 -3.965 -1.335 H3 OVD 58 OVD HAY H24 H 0 1 N N N -2.582 38.843 18.582 9.101 -3.188 -1.125 HAY OVD 59 OVD H65 H25 H 0 1 N N N -3.990 38.698 17.475 8.156 -3.681 0.301 H65 OVD 60 OVD HAZ H26 H 0 1 N N N -0.881 24.023 18.439 -4.833 -1.876 -0.092 HAZ OVD 61 OVD H66 H27 H 0 1 N N N 0.403 24.172 17.192 -5.571 -1.134 -1.532 H66 OVD 62 OVD HBB H28 H 0 1 N N N -3.387 23.023 17.077 -6.983 0.754 1.265 HBB OVD 63 OVD HBC H29 H 0 1 N N N -3.462 20.943 15.561 -9.256 -0.263 1.906 HBC OVD 64 OVD H32 H30 H 0 1 N N N -0.294 30.913 15.430 2.038 2.553 1.636 H32 OVD 65 OVD H67 H31 H 0 1 N N N -3.164 29.812 20.788 1.096 -4.445 -1.546 H67 OVD 66 OVD HAN H32 H 0 1 N N N -3.616 28.022 16.610 -2.028 -1.980 1.046 HAN OVD 67 OVD HAV H33 H 0 1 N N N 1.780 26.770 15.929 -3.296 3.529 0.217 HAV OVD 68 OVD HAW H34 H 0 1 N N N 3.416 29.594 18.808 -0.074 4.638 -2.421 HAW OVD 69 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OVD C8 C7 SING N N 1 OVD NBD NBC SING Y N 2 OVD NBD NBE DOUB Y N 3 OVD NBC CBB SING Y N 4 OVD NBE CBA SING Y N 5 OVD O3 C3 SING N N 6 OVD OAV CAR SING N N 7 OVD N2 C7 SING N N 8 OVD N2 C2 SING N N 9 OVD C7 O7 DOUB N N 10 OVD C3 C2 SING N N 11 OVD C3 C4 SING N N 12 OVD CBB CBA DOUB Y N 13 OVD CBA CAZ SING N N 14 OVD OAX CAZ SING N N 15 OVD OAX CAQ SING N N 16 OVD O4 C4 SING N N 17 OVD O4 CAU SING N N 18 OVD CAP OAN SING N N 19 OVD CAP CAQ SING N N 20 OVD CAP CAU SING N N 21 OVD C2 C1 SING N N 22 OVD OAT CAU SING N N 23 OVD OAT CAS SING N N 24 OVD CAR CAQ SING N N 25 OVD CAR CAS SING N N 26 OVD C4 C5 SING N N 27 OVD CAF O1 SING N N 28 OVD CAF CAM SING N N 29 OVD C1 O1 SING N N 30 OVD C1 O5 SING N N 31 OVD C5 O5 SING N N 32 OVD C5 C6 SING N N 33 OVD CAS CAO SING N N 34 OVD CAO OAW SING N N 35 OVD CAY CAM SING N N 36 OVD C6 O6 SING N N 37 OVD C4 H4 SING N N 38 OVD C5 H5 SING N N 39 OVD C6 H62 SING N N 40 OVD C6 H61 SING N N 41 OVD C8 H82 SING N N 42 OVD C8 H81 SING N N 43 OVD C8 H83 SING N N 44 OVD N2 H22 SING N N 45 OVD C3 H31 SING N N 46 OVD C1 H1 SING N N 47 OVD C2 H21 SING N N 48 OVD CAF HAF SING N N 49 OVD CAF H63 SING N N 50 OVD CAM HAM SING N N 51 OVD CAM H2 SING N N 52 OVD CAO HAO SING N N 53 OVD CAO H64 SING N N 54 OVD CAP HAP SING N N 55 OVD CAQ HAQ SING N N 56 OVD CAR HAR SING N N 57 OVD CAS HAS SING N N 58 OVD CAU HAU SING N N 59 OVD CAY H3 SING N N 60 OVD CAY HAY SING N N 61 OVD CAY H65 SING N N 62 OVD CAZ HAZ SING N N 63 OVD CAZ H66 SING N N 64 OVD CBB HBB SING N N 65 OVD NBC HBC SING N N 66 OVD O3 H32 SING N N 67 OVD O6 H67 SING N N 68 OVD OAN HAN SING N N 69 OVD OAV HAV SING N N 70 OVD OAW HAW SING N N 71 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OVD InChI InChI 1.06 "InChI=1S/C20H34N4O11/c1-3-4-31-19-13(22-9(2)27)15(29)17(12(7-26)34-19)35-20-16(30)18(14(28)11(6-25)33-20)32-8-10-5-21-24-23-10/h5,11-20,25-26,28-30H,3-4,6-8H2,1-2H3,(H,22,27)(H,21,23,24)/t11-,12-,13-,14+,15-,16-,17-,18+,19-,20+/m1/s1" OVD InChIKey InChI 1.06 BHUHIMJWCDUIMU-MRHFAZSRSA-N OVD SMILES_CANONICAL CACTVS 3.385 "CCCO[C@@H]1O[C@H](CO)[C@@H](O[C@@H]2O[C@H](CO)[C@H](O)[C@H](OCc3c[nH]nn3)[C@H]2O)[C@H](O)[C@H]1NC(C)=O" OVD SMILES CACTVS 3.385 "CCCO[CH]1O[CH](CO)[CH](O[CH]2O[CH](CO)[CH](O)[CH](OCc3c[nH]nn3)[CH]2O)[CH](O)[CH]1NC(C)=O" OVD SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CCCO[C@H]1[C@@H]([C@H]([C@@H]([C@H](O1)CO)O[C@H]2[C@@H]([C@H]([C@H]([C@H](O2)CO)O)OCc3c[nH]nn3)O)O)NC(=O)C" OVD SMILES "OpenEye OEToolkits" 3.1.0.0 "CCCOC1C(C(C(C(O1)CO)OC2C(C(C(C(O2)CO)O)OCc3c[nH]nn3)O)O)NC(=O)C" # _pdbx_chem_comp_identifier.comp_id OVD _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "~{N}-[(2~{R},3~{R},4~{R},5~{S},6~{R})-6-(hydroxymethyl)-5-[(2~{S},3~{R},4~{S},5~{S},6~{R})-6-(hydroxymethyl)-3,5-bis(oxidanyl)-4-(1~{H}-1,2,3-triazol-4-ylmethoxy)oxan-2-yl]oxy-4-oxidanyl-2-propoxy-oxan-3-yl]ethanamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OVD "Create component" 2022-09-21 PDBE OVD "Modify formula" 2022-09-30 PDBE OVD "Initial release" 2023-09-20 RCSB #