data_OVL # _chem_comp.id OVL _chem_comp.name "(1~{R},25~{R},26~{S},27~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-26,27-bis(oxidanyl)-28-oxa-2,4,6,9,14,17,21,23-octazatetracyclo[23.2.1.0^{2,10}.0^{3,8}]octacosa-3(8),4,6,9-tetraen-11-yne-16,22-dione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C29 H36 N14 O8" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-21 _chem_comp.pdbx_modified_date 2023-05-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 708.685 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OVL _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7ZZE _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OVL C17 C1 C 0 1 N N N 17.207 10.731 13.039 0.893 1.730 1.390 C17 OVL 1 OVL C21 C2 C 0 1 N N N 12.442 8.923 12.015 2.639 -2.127 3.398 C21 OVL 2 OVL C22 C3 C 0 1 N N N 14.151 10.002 10.800 0.233 -1.852 3.365 C22 OVL 3 OVL C26 C4 C 0 1 N N R 16.864 9.404 8.004 -3.003 -2.206 1.973 C26 OVL 4 OVL C02 C5 C 0 1 N N N 12.174 7.343 11.935 3.198 -2.958 2.272 C02 OVL 5 OVL C04 C6 C 0 1 N N N 12.997 4.992 11.215 4.881 -3.491 0.641 C04 OVL 6 OVL C05 C7 C 0 1 N N N 13.710 4.277 10.042 6.082 -2.825 -0.034 C05 OVL 7 OVL C06 C8 C 0 1 N N N 15.317 4.258 10.199 5.721 -2.466 -1.477 C06 OVL 8 OVL C08 C9 C 0 1 N N N 16.162 5.633 12.270 4.232 -0.684 -2.101 C08 OVL 9 OVL C11 C10 C 0 1 N N N 17.022 7.146 14.234 2.608 0.972 -2.752 C11 OVL 10 OVL C12 C11 C 0 1 N N R 18.545 7.210 14.531 2.327 2.452 -2.495 C12 OVL 11 OVL C14 C12 C 0 1 N N R 19.834 9.122 14.188 0.910 3.640 -1.067 C14 OVL 12 OVL C16 C13 C 0 1 Y N N 18.786 11.132 12.895 -0.199 2.556 0.947 C16 OVL 13 OVL C18 C14 C 0 1 N N N 16.020 10.446 13.156 1.453 0.955 2.111 C18 OVL 14 OVL C19 C15 C 0 1 N N N 14.454 10.113 13.383 1.677 0.090 3.287 C19 OVL 15 OVL C23 C16 C 0 1 N N R 15.624 9.907 10.155 -0.909 -1.146 2.632 C23 OVL 16 OVL C25 C17 C 0 1 N N R 17.122 8.390 9.068 -2.257 -1.538 0.790 C25 OVL 17 OVL C27 C18 C 0 1 N N S 15.638 10.119 8.579 -2.264 -1.614 3.198 C27 OVL 18 OVL C31 C19 C 0 1 Y N N 15.971 6.478 7.636 -1.480 -3.275 -0.867 C31 OVL 19 OVL C33 C20 C 0 1 Y N N 17.683 5.060 7.553 -3.095 -3.260 -2.314 C33 OVL 20 OVL C34 C21 C 0 1 Y N N 18.120 6.188 8.304 -3.418 -2.323 -1.317 C34 OVL 21 OVL C36 C22 C 0 1 Y N N 20.224 5.238 8.611 -5.375 -1.846 -2.424 C36 OVL 22 OVL C38 C23 C 0 1 Y N N 18.653 3.961 7.349 -4.001 -3.439 -3.374 C38 OVL 23 OVL C41 C24 C 0 1 Y N N 20.684 12.272 12.321 -2.168 3.474 0.876 C41 OVL 24 OVL C42 C25 C 0 1 Y N N 21.103 11.116 13.050 -1.437 3.970 -0.217 C42 OVL 25 OVL C44 C26 C 0 1 Y N N 23.375 11.680 12.845 -3.261 5.219 -0.843 C44 OVL 26 OVL C46 C27 C 0 1 Y N N 21.756 13.177 11.833 -3.490 3.922 1.053 C46 OVL 27 OVL C48 C28 C 0 1 N N R 19.033 9.326 15.484 2.263 3.613 -0.333 C48 OVL 28 OVL C49 C29 C 0 1 N N S 18.827 7.864 15.913 3.218 2.948 -1.345 C49 OVL 29 OVL N03 N1 N 0 1 N N N 13.150 6.481 11.347 4.409 -2.612 1.738 N03 OVL 30 OVL N07 N2 N 0 1 N N N 15.857 5.497 10.825 5.435 -1.013 -1.537 N07 OVL 31 OVL N10 N3 N 0 1 N N N 16.656 6.873 12.800 3.943 0.650 -2.191 N10 OVL 32 OVL N15 N4 N 0 1 Y N N 19.909 10.389 13.428 -0.192 3.383 -0.144 N15 OVL 33 OVL N20 N5 N 0 1 N N N 13.919 9.256 12.083 1.519 -1.317 2.898 N20 OVL 34 OVL N30 N6 N 0 1 Y N N 17.022 7.119 8.369 -2.379 -2.351 -0.422 N30 OVL 35 OVL N32 N7 N 0 1 Y N N 16.344 5.286 7.158 -1.903 -3.807 -1.977 N32 OVL 36 OVL N35 N8 N 0 1 Y N N 19.409 6.272 8.837 -4.557 -1.645 -1.412 N35 OVL 37 OVL N37 N9 N 0 1 Y N N 19.904 4.080 7.884 -5.115 -2.715 -3.383 N37 OVL 38 OVL N39 N10 N 0 1 N N N 18.315 2.772 6.604 -3.737 -4.347 -4.384 N39 OVL 39 OVL N40 N11 N 0 1 Y N N 19.258 12.240 12.253 -1.364 2.624 1.551 N40 OVL 40 OVL N43 N12 N 0 1 Y N N 22.442 10.848 13.292 -2.020 4.828 -1.046 N43 OVL 41 OVL N45 N13 N 0 1 Y N N 23.071 12.829 12.137 -3.985 4.788 0.173 N45 OVL 42 OVL N47 N14 N 0 1 N N N 21.468 14.370 11.091 -4.255 3.474 2.115 N47 OVL 43 OVL O01 O1 O 0 1 N N N 11.128 6.915 12.373 2.586 -3.916 1.848 O01 OVL 44 OVL O09 O2 O 0 1 N N N 15.987 4.676 13.018 3.460 -1.533 -2.501 O09 OVL 45 OVL O13 O3 O 0 1 N N N 19.196 8.021 13.564 0.964 2.638 -2.091 O13 OVL 46 OVL O24 O4 O 0 1 N N N 15.992 8.546 10.082 -0.885 -1.495 1.238 O24 OVL 47 OVL O28 O5 O 0 1 N N N 15.698 11.447 8.303 -2.991 -0.507 3.735 O28 OVL 48 OVL O29 O6 O 0 1 N N N 18.024 10.144 7.912 -4.382 -1.834 1.982 O29 OVL 49 OVL O50 O7 O 0 1 N N N 20.026 7.385 16.441 4.166 3.901 -1.831 O50 OVL 50 OVL O51 O8 O 0 1 N N N 19.765 9.971 16.442 2.697 4.940 -0.031 O51 OVL 51 OVL H1 H1 H 0 1 N N N 12.013 9.400 11.121 2.287 -2.783 4.194 H1 OVL 52 OVL H2 H2 H 0 1 N N N 11.949 9.320 12.915 3.418 -1.470 3.787 H2 OVL 53 OVL H3 H3 H 0 1 N N N 13.940 11.065 10.991 0.137 -1.681 4.438 H3 OVL 54 OVL H4 H4 H 0 1 N N N 13.438 9.615 10.057 0.189 -2.922 3.162 H4 OVL 55 OVL H5 H5 H 0 1 N N N 16.604 8.912 7.055 -2.893 -3.290 1.940 H5 OVL 56 OVL H6 H6 H 0 1 N N N 11.921 4.784 11.117 4.082 -3.629 -0.087 H6 OVL 57 OVL H7 H7 H 0 1 N N N 13.374 4.543 12.146 5.176 -4.458 1.049 H7 OVL 58 OVL H8 H8 H 0 1 N N N 13.455 4.798 9.107 6.348 -1.919 0.510 H8 OVL 59 OVL H9 H9 H 0 1 N N N 13.350 3.239 9.993 6.927 -3.513 -0.032 H9 OVL 60 OVL H10 H10 H 0 1 N N N 15.598 3.398 10.825 6.557 -2.703 -2.134 H10 OVL 61 OVL H11 H11 H 0 1 N N N 15.765 4.146 9.201 4.839 -3.027 -1.786 H11 OVL 62 OVL H12 H12 H 0 1 N N N 16.579 8.112 14.519 1.847 0.363 -2.264 H12 OVL 63 OVL H13 H13 H 0 1 N N N 16.589 6.347 14.853 2.603 0.777 -3.824 H13 OVL 64 OVL H14 H14 H 0 1 N N N 18.955 6.189 14.527 2.526 3.038 -3.391 H14 OVL 65 OVL H15 H15 H 0 1 N N N 20.856 8.831 14.473 0.768 4.619 -1.530 H15 OVL 66 OVL H16 H16 H 0 1 N N N 13.883 11.049 13.473 2.685 0.251 3.669 H16 OVL 67 OVL H17 H17 H 0 1 N N N 14.329 9.517 14.299 0.951 0.336 4.062 H17 OVL 68 OVL H18 H18 H 0 1 N N N 16.342 10.561 10.671 -0.812 -0.066 2.748 H18 OVL 69 OVL H19 H19 H 0 1 N N N 18.105 8.533 9.540 -2.636 -0.530 0.618 H19 OVL 70 OVL H20 H20 H 0 1 N N N 14.729 9.661 8.162 -2.115 -2.379 3.960 H20 OVL 71 OVL H21 H21 H 0 1 N N N 14.991 6.908 7.487 -0.553 -3.526 -0.373 H21 OVL 72 OVL H22 H22 H 0 1 N N N 21.220 5.298 9.025 -6.293 -1.279 -2.470 H22 OVL 73 OVL H23 H23 H 0 1 N N N 24.412 11.451 13.042 -3.703 5.921 -1.534 H23 OVL 74 OVL H24 H24 H 0 1 N N N 18.068 9.809 15.273 2.194 3.016 0.576 H24 OVL 75 OVL H25 H25 H 0 1 N N N 17.967 7.758 16.590 3.736 2.109 -0.881 H25 OVL 76 OVL H26 H26 H 0 1 N N N 13.991 6.896 11.000 4.919 -1.850 2.052 H26 OVL 77 OVL H27 H27 H 0 1 N N N 16.024 6.286 10.234 6.054 -0.346 -1.201 H27 OVL 78 OVL H28 H28 H 0 1 N N N 16.768 7.628 12.154 4.567 1.337 -1.909 H28 OVL 79 OVL H30 H30 H 0 1 N N N 19.103 2.156 6.582 -2.920 -4.869 -4.366 H30 OVL 80 OVL H31 H31 H 0 1 N N N 17.544 2.311 7.044 -4.370 -4.462 -5.110 H31 OVL 81 OVL H32 H32 H 0 1 N N N 22.323 14.839 10.868 -5.165 3.790 2.224 H32 OVL 82 OVL H33 H33 H 0 1 N N N 20.990 14.130 10.246 -3.881 2.842 2.749 H33 OVL 83 OVL H34 H34 H 0 1 N N N 14.934 11.881 8.664 -3.876 -0.735 4.052 H34 OVL 84 OVL H35 H35 H 0 1 N N N 18.715 9.606 7.545 -4.871 -2.154 2.752 H35 OVL 85 OVL H36 H36 H 0 1 N N N 20.186 7.792 17.284 4.757 4.251 -1.150 H36 OVL 86 OVL H37 H37 H 0 1 N N N 19.238 10.078 17.225 3.545 4.981 0.431 H37 OVL 87 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OVL N39 C38 SING N N 1 OVL N32 C33 SING Y N 2 OVL N32 C31 DOUB Y N 3 OVL C38 C33 DOUB Y N 4 OVL C38 N37 SING Y N 5 OVL C33 C34 SING Y N 6 OVL C31 N30 SING Y N 7 OVL N37 C36 DOUB Y N 8 OVL O29 C26 SING N N 9 OVL C26 C27 SING N N 10 OVL C26 C25 SING N N 11 OVL O28 C27 SING N N 12 OVL C34 N30 SING Y N 13 OVL C34 N35 DOUB Y N 14 OVL N30 C25 SING N N 15 OVL C27 C23 SING N N 16 OVL C36 N35 SING Y N 17 OVL C25 O24 SING N N 18 OVL C05 C06 SING N N 19 OVL C05 C04 SING N N 20 OVL O24 C23 SING N N 21 OVL C23 C22 SING N N 22 OVL C06 N07 SING N N 23 OVL C22 N20 SING N N 24 OVL N07 C08 SING N N 25 OVL N47 C46 SING N N 26 OVL C04 N03 SING N N 27 OVL N03 C02 SING N N 28 OVL C46 N45 DOUB Y N 29 OVL C46 C41 SING Y N 30 OVL C02 C21 SING N N 31 OVL C02 O01 DOUB N N 32 OVL C21 N20 SING N N 33 OVL N20 C19 SING N N 34 OVL N45 C44 SING Y N 35 OVL N40 C41 SING Y N 36 OVL N40 C16 DOUB Y N 37 OVL C08 N10 SING N N 38 OVL C08 O09 DOUB N N 39 OVL C41 C42 DOUB Y N 40 OVL N10 C11 SING N N 41 OVL C44 N43 DOUB Y N 42 OVL C16 C17 SING N N 43 OVL C16 N15 SING Y N 44 OVL C17 C18 TRIP N N 45 OVL C42 N43 SING Y N 46 OVL C42 N15 SING Y N 47 OVL C18 C19 SING N N 48 OVL N15 C14 SING N N 49 OVL O13 C14 SING N N 50 OVL O13 C12 SING N N 51 OVL C14 C48 SING N N 52 OVL C11 C12 SING N N 53 OVL C12 C49 SING N N 54 OVL C48 C49 SING N N 55 OVL C48 O51 SING N N 56 OVL C49 O50 SING N N 57 OVL C21 H1 SING N N 58 OVL C21 H2 SING N N 59 OVL C22 H3 SING N N 60 OVL C22 H4 SING N N 61 OVL C26 H5 SING N N 62 OVL C04 H6 SING N N 63 OVL C04 H7 SING N N 64 OVL C05 H8 SING N N 65 OVL C05 H9 SING N N 66 OVL C06 H10 SING N N 67 OVL C06 H11 SING N N 68 OVL C11 H12 SING N N 69 OVL C11 H13 SING N N 70 OVL C12 H14 SING N N 71 OVL C14 H15 SING N N 72 OVL C19 H16 SING N N 73 OVL C19 H17 SING N N 74 OVL C23 H18 SING N N 75 OVL C25 H19 SING N N 76 OVL C27 H20 SING N N 77 OVL C31 H21 SING N N 78 OVL C36 H22 SING N N 79 OVL C44 H23 SING N N 80 OVL C48 H24 SING N N 81 OVL C49 H25 SING N N 82 OVL N03 H26 SING N N 83 OVL N07 H27 SING N N 84 OVL N10 H28 SING N N 85 OVL N39 H30 SING N N 86 OVL N39 H31 SING N N 87 OVL N47 H32 SING N N 88 OVL N47 H33 SING N N 89 OVL O28 H34 SING N N 90 OVL O29 H35 SING N N 91 OVL O50 H36 SING N N 92 OVL O51 H37 SING N N 93 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OVL InChI InChI 1.06 "InChI=1S/C29H36N14O8/c30-23-17-25(37-10-35-23)42(12-39-17)27-21(47)20(46)14(51-27)8-41-6-1-3-15-40-18-24(31)36-11-38-26(18)43(15)28-22(48)19(45)13(50-28)7-34-29(49)33-5-2-4-32-16(44)9-41/h10-14,19-22,27-28,45-48H,2,4-9H2,(H,32,44)(H2,30,35,37)(H2,31,36,38)(H2,33,34,49)/t13-,14-,19-,20-,21-,22-,27-,28-/m1/s1" OVL InChIKey InChI 1.06 JUVLXNMEOQXWRD-CGZJSAOLSA-N OVL SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CN4CC#Cc5nc6c(N)ncnc6n5[C@@H]7O[C@H](CNC(=O)NCCCNC(=O)C4)[C@@H](O)[C@H]7O)[C@@H](O)[C@H]3O" OVL SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CN4CC#Cc5nc6c(N)ncnc6n5[CH]7O[CH](CNC(=O)NCCCNC(=O)C4)[CH](O)[CH]7O)[CH](O)[CH]3O" OVL SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)CN4CC#Cc5nc6c(ncnc6n5[C@H]7[C@@H]([C@@H]([C@H](O7)CNC(=O)NCCCNC(=O)C4)O)O)N)O)O)N" OVL SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)CN4CC#Cc5nc6c(ncnc6n5C7C(C(C(O7)CNC(=O)NCCCNC(=O)C4)O)O)N)O)O)N" # _pdbx_chem_comp_identifier.comp_id OVL _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},25~{R},26~{S},27~{R})-14-[[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl]-7-azanyl-26,27-bis(oxidanyl)-28-oxa-2,4,6,9,14,17,21,23-octazatetracyclo[23.2.1.0^{2,10}.0^{3,8}]octacosa-3(8),4,6,9-tetraen-11-yne-16,22-dione" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OVL "Create component" 2022-09-21 PDBE OVL "Initial release" 2023-01-11 RCSB OVL "Modify formula" 2023-05-15 PDBE #