data_OW1 # _chem_comp.id OW1 _chem_comp.name "Nirmatrelvir (reacted form)" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H35 F3 N4 O4" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-22 _chem_comp.pdbx_modified_date 2023-02-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 500.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OW1 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B2T _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OW1 C1 C1 C 0 1 N N N 18.243 -20.591 -30.771 4.493 2.917 1.168 C1 OW1 1 OW1 C2 C2 C 0 1 N N N 17.576 -19.970 -29.811 4.994 1.729 1.400 C2 OW1 2 OW1 C3 C3 C 0 1 N N S 18.028 -19.937 -28.359 4.352 0.509 0.793 C3 OW1 3 OW1 C4 C4 C 0 1 N N N 17.035 -20.763 -27.536 5.398 -0.276 -0.001 C4 OW1 4 OW1 C5 C5 C 0 1 N N S 17.449 -20.966 -26.071 4.778 -1.578 -0.513 C5 OW1 5 OW1 C6 C6 C 0 1 N N N 18.692 -21.814 -25.802 4.405 -2.502 0.669 C6 OW1 6 OW1 C7 C7 C 0 1 N N N 18.379 -22.631 -24.562 4.731 -3.898 0.093 C7 OW1 7 OW1 N1 N1 N 0 1 N N N 16.927 -22.603 -24.505 5.751 -3.668 -0.937 N1 OW1 8 OW1 C8 C8 C 0 1 N N N 16.366 -21.668 -25.279 5.795 -2.375 -1.300 C8 OW1 9 OW1 O1 O1 O 0 1 N N N 15.169 -21.400 -25.338 6.542 -1.914 -2.138 O1 OW1 10 OW1 N2 N2 N 0 1 N N N 18.124 -18.571 -27.854 3.268 0.922 -0.102 N2 OW1 11 OW1 C9 C9 C 0 1 N N N 19.252 -18.031 -27.384 2.019 1.078 0.379 C9 OW1 12 OW1 O2 O2 O 0 1 N N N 20.307 -18.653 -27.304 1.792 0.878 1.554 O2 OW1 13 OW1 C10 C10 C 0 1 N N S 19.157 -16.579 -26.910 0.905 1.503 -0.542 C10 OW1 14 OW1 C11 C11 C 0 1 N N R 19.888 -15.642 -27.865 0.899 3.038 -0.708 C11 OW1 15 OW1 C12 C12 C 0 1 N N S 21.100 -15.089 -27.139 -0.118 3.548 0.334 C12 OW1 16 OW1 C13 C13 C 0 1 N N N 21.104 -15.655 -25.730 -0.637 2.277 1.039 C13 OW1 17 OW1 N3 N3 N 0 1 N N N 19.846 -16.415 -25.628 -0.412 1.188 0.061 N3 OW1 18 OW1 C14 C14 C 0 1 N N N 19.330 -16.943 -24.500 -1.220 0.146 -0.219 C14 OW1 19 OW1 O3 O3 O 0 1 N N N 18.260 -17.541 -24.504 -0.928 -0.628 -1.105 O3 OW1 20 OW1 C15 C15 C 0 1 N N S 20.072 -16.736 -23.181 -2.488 -0.056 0.571 C15 OW1 21 OW1 N4 N4 N 0 1 N N N 19.179 -16.065 -22.249 -3.458 -0.794 -0.243 N4 OW1 22 OW1 C16 C16 C 0 1 N N N 19.446 -14.854 -21.785 -4.777 -0.669 0.003 C16 OW1 23 OW1 O4 O4 O 0 1 N N N 20.431 -14.213 -22.088 -5.161 0.053 0.899 O4 OW1 24 OW1 C17 C17 C 0 1 N N N 18.458 -14.255 -20.784 -5.774 -1.428 -0.834 C17 OW1 25 OW1 F1 F1 F 0 1 N N N 17.199 -14.597 -21.010 -5.644 -1.048 -2.174 F1 OW1 26 OW1 F2 F2 F 0 1 N N N 18.495 -12.932 -20.833 -5.536 -2.801 -0.713 F2 OW1 27 OW1 F3 F3 F 0 1 N N N 18.744 -14.649 -19.553 -7.070 -1.139 -0.391 F3 OW1 28 OW1 C18 C18 C 0 1 N N N 20.669 -18.036 -22.594 -2.177 -0.853 1.840 C18 OW1 29 OW1 C19 C19 C 0 1 N N N 21.456 -17.688 -21.328 -1.465 -2.154 1.463 C19 OW1 30 OW1 C20 C20 C 0 1 N N N 19.607 -19.077 -22.220 -1.273 -0.023 2.754 C20 OW1 31 OW1 C21 C21 C 0 1 N N N 21.615 -18.656 -23.620 -3.481 -1.178 2.570 C21 OW1 32 OW1 C22 C22 C 0 1 N N N 20.002 -14.165 -27.572 -0.399 3.710 -1.161 C22 OW1 33 OW1 C23 C23 C 0 1 N N N 20.366 -13.235 -28.712 -0.296 5.118 -1.749 C23 OW1 34 OW1 C24 C24 C 0 1 N N N 19.027 -13.544 -26.593 -1.478 2.816 -1.776 C24 OW1 35 OW1 H1 H1 H 0 1 N N N 19.161 -21.111 -30.541 3.620 3.022 0.542 H1 OW1 36 OW1 H4 H4 H 0 1 N N N 19.015 -20.418 -28.292 3.948 -0.122 1.585 H4 OW1 37 OW1 H5 H5 H 0 1 N N N 16.062 -20.250 -27.552 5.737 0.322 -0.846 H5 OW1 38 OW1 H6 H6 H 0 1 N N N 16.935 -21.752 -28.007 6.246 -0.507 0.644 H6 OW1 39 OW1 H7 H7 H 0 1 N N N 17.612 -19.974 -25.625 3.901 -1.367 -1.124 H7 OW1 40 OW1 H8 H8 H 0 1 N N N 18.895 -22.477 -26.656 5.022 -2.287 1.542 H8 OW1 41 OW1 H9 H9 H 0 1 N N N 19.564 -21.168 -25.624 3.346 -2.417 0.911 H9 OW1 42 OW1 H10 H10 H 0 1 N N N 18.750 -23.661 -24.664 5.124 -4.547 0.876 H10 OW1 43 OW1 H11 H11 H 0 1 N N N 18.818 -22.170 -23.665 3.839 -4.340 -0.351 H11 OW1 44 OW1 H12 H12 H 0 1 N N N 16.394 -23.229 -23.936 6.319 -4.361 -1.308 H12 OW1 45 OW1 H13 H13 H 0 1 N N N 17.298 -18.007 -27.860 3.450 1.082 -1.042 H13 OW1 46 OW1 H14 H14 H 0 1 N N N 18.101 -16.281 -26.827 1.006 1.014 -1.511 H14 OW1 47 OW1 H15 H15 H 0 1 N N N 20.019 -15.973 -28.906 1.851 3.541 -0.876 H15 OW1 48 OW1 H16 H16 H 0 1 N N N 22.055 -15.055 -27.683 0.083 4.422 0.953 H16 OW1 49 OW1 H17 H17 H 0 1 N N N 21.970 -16.317 -25.580 -0.072 2.090 1.952 H17 OW1 50 OW1 H18 H18 H 0 1 N N N 21.129 -14.845 -24.987 -1.700 2.373 1.262 H18 OW1 51 OW1 H19 H19 H 0 1 N N N 20.916 -16.062 -23.387 -2.905 0.913 0.844 H19 OW1 52 OW1 H20 H20 H 0 1 N N N 18.344 -16.529 -21.952 -3.150 -1.371 -0.959 H20 OW1 53 OW1 H21 H21 H 0 1 N N N 20.778 -17.241 -20.586 -0.536 -1.922 0.943 H21 OW1 54 OW1 H22 H22 H 0 1 N N N 21.904 -18.602 -20.912 -1.243 -2.721 2.367 H22 OW1 55 OW1 H23 H23 H 0 1 N N N 22.252 -16.971 -21.577 -2.109 -2.745 0.812 H23 OW1 56 OW1 H24 H24 H 0 1 N N N 18.916 -18.647 -21.480 -1.808 0.870 3.080 H24 OW1 57 OW1 H25 H25 H 0 1 N N N 19.046 -19.368 -23.120 -0.993 -0.617 3.624 H25 OW1 58 OW1 H26 H26 H 0 1 N N N 20.098 -19.963 -21.791 -0.376 0.270 2.209 H26 OW1 59 OW1 H27 H27 H 0 1 N N N 22.045 -19.582 -23.211 -4.125 -1.769 1.919 H27 OW1 60 OW1 H28 H28 H 0 1 N N N 21.058 -18.886 -24.540 -3.259 -1.745 3.474 H28 OW1 61 OW1 H29 H29 H 0 1 N N N 22.424 -17.946 -23.849 -3.988 -0.251 2.838 H29 OW1 62 OW1 H30 H30 H 0 1 N N N 20.410 -12.200 -28.342 0.341 5.097 -2.633 H30 OW1 63 OW1 H31 H31 H 0 1 N N N 21.347 -13.520 -29.119 -1.290 5.470 -2.026 H31 OW1 64 OW1 H32 H32 H 0 1 N N N 19.605 -13.310 -29.503 0.134 5.791 -1.008 H32 OW1 65 OW1 H33 H33 H 0 1 N N N 18.802 -14.264 -25.792 -1.781 2.061 -1.051 H33 OW1 66 OW1 H34 H34 H 0 1 N N N 19.473 -12.638 -26.157 -2.340 3.424 -2.050 H34 OW1 67 OW1 H35 H35 H 0 1 N N N 18.098 -13.279 -27.119 -1.081 2.327 -2.665 H35 OW1 68 OW1 H2 H2 H 0 1 N N N 17.869 -20.578 -31.784 4.951 3.792 1.607 H2 OW1 69 OW1 H3 H3 H 0 1 N Y N 16.661 -19.459 -30.073 5.868 1.625 2.027 H3 OW1 70 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OW1 C1 C2 DOUB N N 1 OW1 C2 C3 SING N N 2 OW1 C23 C22 SING N N 3 OW1 C3 N2 SING N N 4 OW1 C3 C4 SING N N 5 OW1 C11 C22 SING N N 6 OW1 C11 C12 SING N N 7 OW1 C11 C10 SING N N 8 OW1 N2 C9 SING N N 9 OW1 C22 C12 SING N N 10 OW1 C22 C24 SING N N 11 OW1 C4 C5 SING N N 12 OW1 C9 O2 DOUB N N 13 OW1 C9 C10 SING N N 14 OW1 C12 C13 SING N N 15 OW1 C10 N3 SING N N 16 OW1 C5 C6 SING N N 17 OW1 C5 C8 SING N N 18 OW1 C6 C7 SING N N 19 OW1 C13 N3 SING N N 20 OW1 N3 C14 SING N N 21 OW1 O1 C8 DOUB N N 22 OW1 C8 N1 SING N N 23 OW1 C7 N1 SING N N 24 OW1 O3 C14 DOUB N N 25 OW1 C14 C15 SING N N 26 OW1 C21 C18 SING N N 27 OW1 C15 C18 SING N N 28 OW1 C15 N4 SING N N 29 OW1 C18 C20 SING N N 30 OW1 C18 C19 SING N N 31 OW1 N4 C16 SING N N 32 OW1 O4 C16 DOUB N N 33 OW1 C16 C17 SING N N 34 OW1 F1 C17 SING N N 35 OW1 F2 C17 SING N N 36 OW1 C17 F3 SING N N 37 OW1 C1 H1 SING N N 38 OW1 C3 H4 SING N N 39 OW1 C4 H5 SING N N 40 OW1 C4 H6 SING N N 41 OW1 C5 H7 SING N N 42 OW1 C6 H8 SING N N 43 OW1 C6 H9 SING N N 44 OW1 C7 H10 SING N N 45 OW1 C7 H11 SING N N 46 OW1 N1 H12 SING N N 47 OW1 N2 H13 SING N N 48 OW1 C10 H14 SING N N 49 OW1 C11 H15 SING N N 50 OW1 C12 H16 SING N N 51 OW1 C13 H17 SING N N 52 OW1 C13 H18 SING N N 53 OW1 C15 H19 SING N N 54 OW1 N4 H20 SING N N 55 OW1 C19 H21 SING N N 56 OW1 C19 H22 SING N N 57 OW1 C19 H23 SING N N 58 OW1 C20 H24 SING N N 59 OW1 C20 H25 SING N N 60 OW1 C20 H26 SING N N 61 OW1 C21 H27 SING N N 62 OW1 C21 H28 SING N N 63 OW1 C21 H29 SING N N 64 OW1 C23 H30 SING N N 65 OW1 C23 H31 SING N N 66 OW1 C23 H32 SING N N 67 OW1 C24 H33 SING N N 68 OW1 C24 H34 SING N N 69 OW1 C24 H35 SING N N 70 OW1 C1 H2 SING N N 71 OW1 C2 H3 SING N N 72 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OW1 InChI InChI 1.06 "InChI=1S/C24H35F3N4O4/c1-7-13(10-12-8-9-28-18(12)32)29-19(33)16-15-14(23(15,5)6)11-31(16)20(34)17(22(2,3)4)30-21(35)24(25,26)27/h7,12-17H,1,8-11H2,2-6H3,(H,28,32)(H,29,33)(H,30,35)/t12-,13+,14-,15-,16-,17+/m0/s1" OW1 InChIKey InChI 1.06 TWWPGJPLBPBRGX-FHULIHMCSA-N OW1 SMILES_CANONICAL CACTVS 3.385 "CC(C)(C)[C@H](NC(=O)C(F)(F)F)C(=O)N1C[C@H]2[C@@H]([C@H]1C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C)C2(C)C" OW1 SMILES CACTVS 3.385 "CC(C)(C)[CH](NC(=O)C(F)(F)F)C(=O)N1C[CH]2[CH]([CH]1C(=O)N[CH](C[CH]3CCNC3=O)C=C)C2(C)C" OW1 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "CC1([C@@H]2[C@H]1[C@H](N(C2)C(=O)[C@H](C(C)(C)C)NC(=O)C(F)(F)F)C(=O)N[C@@H](C[C@@H]3CCNC3=O)C=C)C" OW1 SMILES "OpenEye OEToolkits" 3.1.0.0 "CC1(C2C1C(N(C2)C(=O)C(C(C)(C)C)NC(=O)C(F)(F)F)C(=O)NC(CC3CCNC3=O)C=C)C" # _pdbx_chem_comp_identifier.comp_id OW1 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id OW1 _pdbx_chem_comp_synonyms.name "(1~{R},2~{S},5~{S})-3-[(2~{S})-3,3-dimethyl-2-[2,2,2-tris(fluoranyl)ethanoylamino]butanoyl]-6,6-dimethyl-~{N}-[(2~{S})-1-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]but-3-en-2-yl]-3-azabicyclo[3.1.0]hexane-2-carboxamide" _pdbx_chem_comp_synonyms.provenance PDB _pdbx_chem_comp_synonyms.type ? # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OW1 "Create component" 2022-09-22 PDBE OW1 "Modify aromatic_flag" 2022-09-27 PDBE OW1 "Initial release" 2023-02-22 RCSB #