data_OXK # _chem_comp.id OXK _chem_comp.name "OXALYL-COENZYME A" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C23 H36 N7 O19 P3 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-02-26 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 839.554 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OXK _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "OpenEye/OEToolkits V1.4.2" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OXK C8 C8 C 0 1 Y N N 81.438 -25.021 0.686 9.881 -4.603 4.433 C8 OXK 1 OXK N9 N9 N 0 1 Y N N 82.726 -24.877 1.037 8.881 -3.811 3.933 N9 OXK 2 OXK C4 C4 C 0 1 Y N N 82.946 -25.565 2.160 7.885 -3.786 4.869 C4 OXK 3 OXK C5 C5 C 0 1 Y N N 81.754 -26.174 2.517 8.343 -4.580 5.908 C5 OXK 4 OXK N7 N7 N 0 1 Y N N 80.833 -25.826 1.586 9.588 -5.083 5.624 N7 OXK 5 OXK N3 N3 N 0 1 Y N N 84.060 -25.753 2.919 6.715 -3.134 4.800 N3 OXK 6 OXK C2 C2 C 0 1 Y N N 84.008 -26.512 4.016 5.989 -3.348 5.920 C2 OXK 7 OXK N1 N1 N 0 1 Y N N 82.871 -27.117 4.390 6.304 -4.092 7.007 N1 OXK 8 OXK C6 C6 C 0 1 Y N N 81.731 -26.960 3.670 7.502 -4.724 7.008 C6 OXK 9 OXK N6 N6 N 0 1 N N N 80.586 -27.572 4.059 7.886 -5.511 8.107 N6 OXK 10 OXK "C1'" "C1'" C 0 1 N N R 83.785 -24.094 0.347 8.888 -3.126 2.639 "C1'" OXK 11 OXK "C2'" "C2'" C 0 1 N N R 83.791 -24.211 -1.181 8.222 -3.927 1.518 "C2'" OXK 12 OXK "O2'" "O2'" O 0 1 N N N 84.563 -25.307 -1.672 8.999 -3.804 0.328 "O2'" OXK 13 OXK "C3'" "C3'" C 0 1 N N S 84.381 -22.871 -1.559 6.876 -3.243 1.369 "C3'" OXK 14 OXK "O3'" "O3'" O 0 1 N N N 85.801 -22.879 -1.432 6.318 -3.376 0.079 "O3'" OXK 15 OXK "C4'" "C4'" C 0 1 N N R 83.852 -21.920 -0.493 7.209 -1.799 1.702 "C4'" OXK 16 OXK "O4'" "O4'" O 0 1 N N N 83.613 -22.712 0.663 8.185 -1.871 2.755 "O4'" OXK 17 OXK "C5'" "C5'" C 0 1 N N N 82.553 -21.215 -0.856 6.010 -0.993 2.166 "C5'" OXK 18 OXK "O5'" "O5'" O 0 1 N N N 81.583 -22.131 -1.361 6.427 0.329 2.461 "O5'" OXK 19 OXK P1 P1 P 0 1 N N R 80.535 -21.652 -2.485 5.658 1.186 3.597 P1 OXK 20 OXK O11 O11 O 0 1 N N N 79.746 -22.860 -2.926 5.698 0.243 4.910 O11 OXK 21 OXK O12 O12 O 0 1 N N N 79.803 -20.444 -1.956 6.197 2.571 3.812 O12 OXK 22 OXK O6 O6 O 0 1 N N N 81.529 -21.219 -3.683 4.103 1.142 3.156 O6 OXK 23 OXK P2 P2 P 0 1 N N R 81.837 -19.734 -4.256 2.773 1.676 3.903 P2 OXK 24 OXK O21 O21 O 0 1 N N N 83.209 -19.755 -4.902 2.853 0.974 5.358 O21 OXK 25 OXK O22 O22 O 0 1 N N N 81.500 -18.651 -3.253 1.490 1.445 3.158 O22 OXK 26 OXK O7 O7 O 0 1 N N N 80.786 -19.689 -5.487 3.173 3.216 4.177 O7 OXK 27 OXK CPB CPB C 0 1 N N N 80.738 -18.598 -6.410 2.278 4.020 4.938 CPB OXK 28 OXK CPA CPA C 0 1 N N N 79.302 -18.092 -6.468 2.823 5.460 5.099 CPA OXK 29 OXK CP7 CP7 C 0 1 N N R 78.876 -17.732 -5.034 4.201 5.462 5.827 CP7 OXK 30 OXK CP9 CP9 C 0 1 N N N 79.220 -16.859 -7.363 3.008 6.083 3.695 CP9 OXK 31 OXK CP8 CP8 C 0 1 N N N 78.413 -19.210 -7.013 1.796 6.324 5.858 CP8 OXK 32 OXK OP3 OP3 O 0 1 N N N 79.743 -16.715 -4.483 4.670 6.801 5.963 OP3 OXK 33 OXK CP6 CP6 C 0 1 N N N 77.463 -17.233 -4.991 4.168 4.871 7.235 CP6 OXK 34 OXK OP2 OP2 O 0 1 N N N 76.509 -17.980 -5.213 3.884 5.544 8.224 OP2 OXK 35 OXK NP2 NP2 N 0 1 N N N 77.349 -15.947 -4.680 4.462 3.517 7.255 NP2 OXK 36 OXK CP5 CP5 C 0 1 N N N 76.125 -15.186 -4.546 4.467 2.731 8.467 CP5 OXK 37 OXK CP4 CP4 C 0 1 N N N 76.580 -13.831 -4.035 5.856 2.754 9.090 CP4 OXK 38 OXK CP3 CP3 C 0 1 N N N 75.427 -12.861 -4.040 6.920 2.201 8.159 CP3 OXK 39 OXK OP1 OP1 O 0 1 N N N 74.521 -12.973 -4.848 6.674 1.782 7.031 OP1 OXK 40 OXK NP1 NP1 N 0 1 N N N 75.486 -11.906 -3.111 8.177 2.231 8.745 NP1 OXK 41 OXK CP2 CP2 C 0 1 N N N 74.533 -10.840 -2.858 9.367 1.760 8.073 CP2 OXK 42 OXK CP1 CP1 C 0 1 N N N 75.048 -9.630 -3.622 9.644 0.283 8.320 CP1 OXK 43 OXK S S S 0 1 N N N 76.580 -9.100 -2.954 9.921 -0.080 10.080 S OXK 44 OXK P3 P3 P 0 1 N N N 86.834 -23.026 -2.660 6.017 -4.863 -0.471 P3 OXK 45 OXK O31 O31 O 0 1 N N N 86.441 -24.375 -3.232 5.225 -4.610 -1.858 O31 OXK 46 OXK O32 O32 O 0 1 N N N 86.586 -21.848 -3.570 7.215 -5.761 -0.572 O32 OXK 47 OXK O33 O33 O 0 1 N N N 88.174 -22.985 -1.963 4.858 -5.381 0.530 O33 OXK 48 OXK CM1 CM1 C 0 1 N N N 76.514 -7.578 -3.785 10.276 -1.765 9.974 CM1 OXK 49 OXK OM2 OM2 O 0 1 N N N 75.672 -7.362 -4.655 10.350 -2.509 9.020 OM2 OXK 50 OXK OM3 OM3 O 0 1 N N N 77.396 -5.358 -3.872 10.836 -3.481 11.421 OM3 OXK 51 OXK OM4 OM4 O 0 1 N N N 78.427 -6.801 -2.606 10.489 -1.393 12.316 OM4 OXK 52 OXK CM2 CM2 C 0 1 N N N 77.509 -6.512 -3.401 10.524 -2.177 11.389 CM2 OXK 53 OXK H8 H8 H 0 1 N N N 80.959 -24.557 -0.192 10.795 -4.792 3.886 H8 OXK 54 OXK "H1'" "H1'" H 0 1 N N N 84.750 -24.519 0.710 9.942 -2.912 2.433 "H1'" OXK 55 OXK H2 H2 H 0 1 N N N 84.920 -26.641 4.623 5.022 -2.858 5.952 H2 OXK 56 OXK H6N1 1H6N H 0 0 N N N 80.243 -28.135 3.281 7.994 -6.501 7.990 H6N1 OXK 57 OXK H6N2 2H6N H 0 0 N N N 80.569 -28.147 4.902 7.956 -5.090 9.014 H6N2 OXK 58 OXK "H2'" "H2'" H 0 1 N N N 82.787 -24.422 -1.618 8.130 -4.997 1.729 "H2'" OXK 59 OXK HA HA H 0 1 N N N 84.567 -25.379 -2.619 9.934 -3.771 0.595 HA OXK 60 OXK "H3'" "H3'" H 0 1 N N N 84.120 -22.601 -2.609 6.174 -3.651 2.106 "H3'" OXK 61 OXK "H4'" "H4'" H 0 1 N N N 84.609 -21.114 -0.353 7.665 -1.288 0.845 "H4'" OXK 62 OXK "H5'1" "1H5'" H 0 0 N N N 82.730 -20.375 -1.568 5.577 -1.435 3.069 "H5'1" OXK 63 OXK "H5'2" "2H5'" H 0 0 N N N 82.152 -20.630 0.005 5.246 -0.956 1.384 "H5'2" OXK 64 OXK H11 H11 H 0 1 N N N 79.128 -22.577 -3.589 6.516 0.216 5.450 H11 OXK 65 OXK H21 H21 H 0 1 N N N 83.390 -18.885 -5.238 2.605 0.029 5.445 H21 OXK 66 OXK HPB1 1HPB H 0 0 N N N 81.142 -18.865 -7.414 1.314 4.021 4.419 HPB1 OXK 67 OXK HPB2 2HPB H 0 0 N N N 81.469 -17.793 -6.164 2.142 3.538 5.913 HPB2 OXK 68 OXK HP7 HP7 H 0 1 N N N 78.953 -18.664 -4.427 4.941 4.920 5.225 HP7 OXK 69 OXK HP91 1HP9 H 0 0 N N N 79.637 -17.051 -8.379 3.444 7.086 3.766 HP91 OXK 70 OXK HP92 2HP9 H 0 0 N N N 79.932 -16.062 -7.043 2.053 6.179 3.166 HP92 OXK 71 OXK HP93 3HP9 H 0 0 N N N 78.169 -16.489 -7.405 3.669 5.474 3.069 HP93 OXK 72 OXK HP81 1HP8 H 0 0 N N N 78.510 -20.155 -6.430 0.872 6.447 5.282 HP81 OXK 73 OXK HP82 2HP8 H 0 0 N N N 78.769 -19.599 -7.996 2.193 7.326 6.054 HP82 OXK 74 OXK HP83 3HP8 H 0 0 N N N 77.362 -18.840 -7.055 1.519 5.873 6.816 HP83 OXK 75 OXK HP3 HP3 H 0 1 N N N 79.480 -16.493 -3.598 4.201 7.182 6.721 HP3 OXK 76 OXK HP2 HP2 H 0 1 N N N 78.262 -15.515 -4.535 4.657 3.035 6.383 HP2 OXK 77 OXK HP51 1HP5 H 0 0 N N N 75.350 -15.676 -3.912 3.726 3.136 9.165 HP51 OXK 78 OXK HP52 2HP5 H 0 0 N N N 75.512 -15.141 -5.476 4.168 1.703 8.234 HP52 OXK 79 OXK HP41 1HP4 H 0 0 N N N 77.455 -13.442 -4.607 5.864 2.162 10.014 HP41 OXK 80 OXK HP42 2HP4 H 0 0 N N N 77.060 -13.903 -3.031 6.132 3.782 9.357 HP42 OXK 81 OXK HP1 HP1 H 0 1 N N N 76.331 -11.999 -2.547 8.265 2.600 9.687 HP1 OXK 82 OXK HP21 1HP2 H 0 0 N N N 74.363 -10.643 -1.774 9.207 1.926 7.003 HP21 OXK 83 OXK HP22 2HP2 H 0 0 N N N 73.482 -11.113 -3.112 10.204 2.392 8.388 HP22 OXK 84 OXK HP11 1HP1 H 0 0 N N N 74.298 -8.805 -3.651 8.813 -0.334 7.964 HP11 OXK 85 OXK HP12 2HP1 H 0 0 N N N 75.117 -9.827 -4.717 10.545 -0.015 7.774 HP12 OXK 86 OXK H31 H31 H 0 1 N N N 87.050 -24.462 -3.956 4.987 -5.380 -2.416 H31 OXK 87 OXK H33 H33 H 0 1 N N N 88.783 -23.072 -2.687 4.555 -6.312 0.465 H33 OXK 88 OXK HM3 HM3 H 0 1 N N N 78.023 -4.686 -3.630 11.054 -3.789 12.327 HM3 OXK 89 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OXK C8 N9 SING Y N 1 OXK N9 C4 SING Y N 2 OXK C4 C5 SING Y N 3 OXK C8 N7 DOUB Y N 4 OXK C5 N7 SING Y N 5 OXK C4 N3 DOUB Y N 6 OXK N3 C2 SING Y N 7 OXK C2 N1 DOUB Y N 8 OXK C5 C6 DOUB Y N 9 OXK N1 C6 SING Y N 10 OXK C6 N6 SING N N 11 OXK N9 "C1'" SING N N 12 OXK "C1'" "C2'" SING N N 13 OXK "C2'" "O2'" SING N N 14 OXK "C2'" "C3'" SING N N 15 OXK "C3'" "O3'" SING N N 16 OXK "C3'" "C4'" SING N N 17 OXK "C1'" "O4'" SING N N 18 OXK "C4'" "O4'" SING N N 19 OXK "C4'" "C5'" SING N N 20 OXK "C5'" "O5'" SING N N 21 OXK "O5'" P1 SING N N 22 OXK P1 O11 SING N N 23 OXK P1 O12 DOUB N N 24 OXK P1 O6 SING N N 25 OXK O6 P2 SING N N 26 OXK P2 O21 SING N N 27 OXK P2 O22 DOUB N N 28 OXK P2 O7 SING N N 29 OXK O7 CPB SING N N 30 OXK CPB CPA SING N N 31 OXK CPA CP7 SING N N 32 OXK CPA CP9 SING N N 33 OXK CPA CP8 SING N N 34 OXK CP7 OP3 SING N N 35 OXK CP7 CP6 SING N N 36 OXK CP6 OP2 DOUB N N 37 OXK CP6 NP2 SING N N 38 OXK NP2 CP5 SING N N 39 OXK CP5 CP4 SING N N 40 OXK CP4 CP3 SING N N 41 OXK CP3 OP1 DOUB N N 42 OXK CP3 NP1 SING N N 43 OXK NP1 CP2 SING N N 44 OXK CP2 CP1 SING N N 45 OXK CP1 S SING N N 46 OXK "O3'" P3 SING N N 47 OXK P3 O31 SING N N 48 OXK P3 O32 DOUB N N 49 OXK P3 O33 SING N N 50 OXK S CM1 SING N N 51 OXK CM1 OM2 DOUB N N 52 OXK CM1 CM2 SING N N 53 OXK OM3 CM2 SING N N 54 OXK OM4 CM2 DOUB N N 55 OXK C8 H8 SING N N 56 OXK "C1'" "H1'" SING N N 57 OXK C2 H2 SING N N 58 OXK N6 H6N1 SING N N 59 OXK N6 H6N2 SING N N 60 OXK "C2'" "H2'" SING N N 61 OXK "O2'" HA SING N N 62 OXK "C3'" "H3'" SING N N 63 OXK "C4'" "H4'" SING N N 64 OXK "C5'" "H5'1" SING N N 65 OXK "C5'" "H5'2" SING N N 66 OXK O11 H11 SING N N 67 OXK O21 H21 SING N N 68 OXK CPB HPB1 SING N N 69 OXK CPB HPB2 SING N N 70 OXK CP7 HP7 SING N N 71 OXK CP9 HP91 SING N N 72 OXK CP9 HP92 SING N N 73 OXK CP9 HP93 SING N N 74 OXK CP8 HP81 SING N N 75 OXK CP8 HP82 SING N N 76 OXK CP8 HP83 SING N N 77 OXK OP3 HP3 SING N N 78 OXK NP2 HP2 SING N N 79 OXK CP5 HP51 SING N N 80 OXK CP5 HP52 SING N N 81 OXK CP4 HP41 SING N N 82 OXK CP4 HP42 SING N N 83 OXK NP1 HP1 SING N N 84 OXK CP2 HP21 SING N N 85 OXK CP2 HP22 SING N N 86 OXK CP1 HP11 SING N N 87 OXK CP1 HP12 SING N N 88 OXK O31 H31 SING N N 89 OXK O33 H33 SING N N 90 OXK OM3 HM3 SING N N 91 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OXK SMILES ACDLabs 10.04 "O=C(O)C(=O)SCCNC(=O)CCNC(=O)C(O)C(C)(C)COP(=O)(O)OP(=O)(O)OCC3OC(n2cnc1c(ncnc12)N)C(O)C3OP(=O)(O)O" OXK SMILES_CANONICAL CACTVS 3.341 "CC(C)(CO[P@@](O)(=O)O[P@](O)(=O)OC[C@H]1O[C@H]([C@H](O)[C@@H]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[C@@H](O)C(=O)NCCC(=O)NCCSC(=O)C(O)=O" OXK SMILES CACTVS 3.341 "CC(C)(CO[P](O)(=O)O[P](O)(=O)OC[CH]1O[CH]([CH](O)[CH]1O[P](O)(O)=O)n2cnc3c(N)ncnc23)[CH](O)C(=O)NCCC(=O)NCCSC(=O)C(O)=O" OXK SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CC(C)(CO[P@](=O)(O)O[P@@](=O)(O)OC[C@@H]1[C@H]([C@H]([C@@H](O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)[C@H](C(=O)NCCC(=O)NCCSC(=O)C(=O)O)O" OXK SMILES "OpenEye OEToolkits" 1.5.0 "CC(C)(COP(=O)(O)OP(=O)(O)OCC1C(C(C(O1)n2cnc3c2ncnc3N)O)OP(=O)(O)O)C(C(=O)NCCC(=O)NCCSC(=O)C(=O)O)O" OXK InChI InChI 1.03 ;InChI=1S/C23H36N7O19P3S/c1-23(2,16(33)19(34)26-4-3-12(31)25-5-6-53-22(37)21(35)36)8-46-52(43,44)49-51(41,42)45-7-11-15(48-50(38,39)40)14(32)20(47-11)30-10-29-13-17(24)27-9-28-18(13)30/h9-11,14-16,20,32-33H,3-8H2,1-2H3,(H,25,31)(H,26,34)(H,35,36)(H,41,42)(H,43,44)(H2,24,27,28)(H2,38,39,40)/t11-,14-,15-,16+,20-/m1/s1 ; OXK InChIKey InChI 1.03 QVXMZFTWJVBUHP-IBOSZNHHSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OXK "SYSTEMATIC NAME" ACDLabs 10.04 "(3S,5S,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-10,14,19-trioxo-2,4,6-trioxa-18-thia-11,15-diaza-3,5-diphosphaicosan-20-oic acid 3,5-dioxide (non-preferred name)" OXK "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[2-[3-[[(2R)-4-[[[(2R,3S,4R,5R)-5-(6-aminopurin-9-yl)-4-hydroxy-3-phosphonooxy-oxolan-2-yl]methoxy-hydroxy-phosphoryl]oxy-hydroxy-phosphoryl]oxy-2-hydroxy-3,3-dimethyl-butanoyl]amino]propanoylamino]ethylsulfanyl]-2-oxo-ethanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OXK "Create component" 2007-02-26 RCSB OXK "Modify descriptor" 2011-06-04 RCSB #