data_OYT
#
_chem_comp.id OYT
_chem_comp.name "9-cyclopropyl-~{N}-methyl-purin-6-amine"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C9 H11 N5"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-04-08
_chem_comp.pdbx_modified_date 2021-04-09
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 189.217
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code OYT
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YM6
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
OYT C10 C1 C 0 1 Y N N 1.678 2.891 3.215 1.298 1.482 -0.109 C10 OYT 1
OYT N12 N1 N 0 1 Y N N 3.467 1.741 6.041 -0.043 -1.776 -0.106 N12 OYT 2
OYT C13 C2 C 0 1 Y N N 3.584 0.480 6.462 -1.321 -2.092 -0.056 C13 OYT 3
OYT C01 C3 C 0 1 N N N 1.754 -2.740 4.470 -4.393 0.644 0.134 C01 OYT 4
OYT C03 C4 C 0 1 Y N N 2.274 -0.304 4.717 -1.985 0.117 0.018 C03 OYT 5
OYT C04 C5 C 0 1 Y N N 2.116 1.016 4.228 -0.636 0.504 -0.034 C04 OYT 6
OYT C05 C6 C 0 1 Y N N 2.738 2.009 4.927 0.341 -0.504 -0.098 C05 OYT 7
OYT C07 C7 C 0 1 N N N 2.882 4.493 4.654 2.870 -0.490 -0.201 C07 OYT 8
OYT C08 C8 C 0 1 N N N 2.542 5.324 5.895 3.848 -0.199 0.939 C08 OYT 9
OYT C09 C9 C 0 1 N N N 2.070 5.785 4.518 4.078 0.418 -0.442 C09 OYT 10
OYT N02 N2 N 0 1 N N N 1.612 -1.367 3.998 -2.992 1.066 0.082 N02 OYT 11
OYT N06 N3 N 0 1 Y N N 2.447 3.156 4.273 1.550 0.143 -0.138 N06 OYT 12
OYT N11 N4 N 0 1 Y N N 1.469 1.566 3.152 0.015 1.692 -0.049 N11 OYT 13
OYT N14 N5 N 0 1 Y N N 2.988 -0.527 5.819 -2.274 -1.180 0.004 N14 OYT 14
OYT H1 H1 H 0 1 N N N 1.288 3.622 2.523 2.052 2.255 -0.130 H1 OYT 15
OYT H2 H2 H 0 1 N N N 4.174 0.269 7.342 -1.599 -3.135 -0.065 H2 OYT 16
OYT H3 H3 H 0 1 N N N 1.189 -3.415 3.811 -4.633 0.065 -0.758 H3 OYT 17
OYT H4 H4 H 0 1 N N N 2.817 -3.023 4.460 -4.555 0.029 1.020 H4 OYT 18
OYT H5 H5 H 0 1 N N N 1.363 -2.817 5.495 -5.036 1.523 0.180 H5 OYT 19
OYT H6 H6 H 0 1 N N N 3.926 4.670 4.356 2.893 -1.486 -0.643 H6 OYT 20
OYT H7 H7 H 0 1 N N N 3.334 5.879 6.419 3.510 0.463 1.736 H7 OYT 21
OYT H8 H8 H 0 1 N N N 1.814 4.945 6.627 4.514 -1.005 1.248 H8 OYT 22
OYT H9 H9 H 0 1 N N N 2.522 6.672 4.050 4.896 0.018 -1.042 H9 OYT 23
OYT H10 H10 H 0 1 N N N 1.002 5.738 4.259 3.891 1.486 -0.554 H10 OYT 24
OYT H11 H11 H 0 1 N N N 1.956 -1.343 3.059 -2.769 2.010 0.091 H11 OYT 25
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
OYT N11 C10 DOUB Y N 1
OYT N11 C04 SING Y N 2
OYT C10 N06 SING Y N 3
OYT N02 C01 SING N N 4
OYT N02 C03 SING N N 5
OYT C04 C03 DOUB Y N 6
OYT C04 C05 SING Y N 7
OYT N06 C07 SING N N 8
OYT N06 C05 SING Y N 9
OYT C09 C07 SING N N 10
OYT C09 C08 SING N N 11
OYT C07 C08 SING N N 12
OYT C03 N14 SING Y N 13
OYT C05 N12 DOUB Y N 14
OYT N14 C13 DOUB Y N 15
OYT N12 C13 SING Y N 16
OYT C10 H1 SING N N 17
OYT C13 H2 SING N N 18
OYT C01 H3 SING N N 19
OYT C01 H4 SING N N 20
OYT C01 H5 SING N N 21
OYT C07 H6 SING N N 22
OYT C08 H7 SING N N 23
OYT C08 H8 SING N N 24
OYT C09 H9 SING N N 25
OYT C09 H10 SING N N 26
OYT N02 H11 SING N N 27
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
OYT InChI InChI 1.03 "InChI=1S/C9H11N5/c1-10-8-7-9(12-4-11-8)14(5-13-7)6-2-3-6/h4-6H,2-3H2,1H3,(H,10,11,12)"
OYT InChIKey InChI 1.03 GSKXLJNKAAXSOE-UHFFFAOYSA-N
OYT SMILES_CANONICAL CACTVS 3.385 "CNc1ncnc2n(cnc12)C3CC3"
OYT SMILES CACTVS 3.385 "CNc1ncnc2n(cnc12)C3CC3"
OYT SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CNc1c2c(ncn1)n(cn2)C3CC3"
OYT SMILES "OpenEye OEToolkits" 2.0.7 "CNc1c2c(ncn1)n(cn2)C3CC3"
#
_pdbx_chem_comp_identifier.comp_id OYT
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "9-cyclopropyl-~{N}-methyl-purin-6-amine"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
OYT "Create component" 2020-04-08 PDBE
OYT "Initial release" 2021-04-14 RCSB
##