data_OZ3 # _chem_comp.id OZ3 _chem_comp.name "5-(aminomethyl)-3~{H}-isoindol-2-ium-1-amine" _chem_comp.type "L-peptide COOH carboxy terminus" _chem_comp.pdbx_type ATOMP _chem_comp.formula "C9 H12 N3" _chem_comp.mon_nstd_parent_comp_id GLY _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-09-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 162.212 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OZ3 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B4X _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OZ3 CA C1 C 0 1 N N N N N N 43.484 -39.434 -8.966 3.299 0.093 0.455 CA OZ3 1 OZ3 CBO C2 C 0 1 Y N N N N N 43.470 -39.363 -7.417 1.810 -0.083 0.308 CBO OZ3 2 OZ3 CBP C3 C 0 1 Y N N N N N 42.309 -39.014 -6.737 1.268 -1.354 0.241 CBP OZ3 3 OZ3 CBQ C4 C 0 1 Y N N N N N 42.332 -38.921 -5.344 -0.095 -1.525 0.107 CBQ OZ3 4 OZ3 CBR C5 C 0 1 Y N N N N N 43.459 -39.166 -4.661 -0.930 -0.411 0.039 CBR OZ3 5 OZ3 CBS C6 C 0 1 N N N N N N 43.705 -39.128 -3.332 -2.393 -0.261 -0.101 CBS OZ3 6 OZ3 CBV C7 C 0 1 N N N N N N 45.692 -39.664 -4.293 -1.533 1.825 0.006 CBV OZ3 7 OZ3 CBW C8 C 0 1 Y N N N N N 44.583 -39.480 -5.323 -0.372 0.868 0.108 CBW OZ3 8 OZ3 CBX C9 C 0 1 Y N N N N N 44.619 -39.585 -6.661 0.986 1.029 0.246 CBX OZ3 9 OZ3 N N1 N 0 1 N N N Y Y N 44.143 -38.174 -9.381 3.917 0.165 -0.876 N OZ3 10 OZ3 NBT N2 N 0 1 N N N N N N 42.850 -38.880 -2.332 -3.279 -1.312 -0.198 NBT OZ3 11 OZ3 NBU N3 N 1 1 N N N N N N 44.985 -39.384 -3.041 -2.733 0.990 -0.120 NBU OZ3 12 OZ3 HA2 H1 H 0 1 N N N N N N 42.460 -39.488 -9.363 3.505 1.013 1.002 HA2 OZ3 13 OZ3 HBP H3 H 0 1 N N N N N N 41.397 -38.817 -7.281 1.915 -2.217 0.294 HBP OZ3 14 OZ3 HBQ H4 H 0 1 N N N N N N 41.433 -38.649 -4.811 -0.513 -2.520 0.055 HBQ OZ3 15 OZ3 HG8 H6 H 0 1 N N N N N N 46.088 -40.690 -4.309 -1.594 2.438 0.905 HG8 OZ3 16 OZ3 HBV H7 H 0 1 N N N N N N 46.514 -38.952 -4.457 -1.423 2.460 -0.873 HBV OZ3 17 OZ3 HBX H8 H 0 1 N N N N N N 45.544 -39.843 -7.154 1.410 2.021 0.303 HBX OZ3 18 OZ3 H H9 H 0 1 N N N Y Y N 44.194 -38.137 -10.379 4.917 0.283 -0.804 H OZ3 19 OZ3 H2 H10 H 0 1 N Y N Y Y N 43.613 -37.395 -9.046 3.688 -0.649 -1.426 H2 OZ3 20 OZ3 H3 H12 H 0 1 N N N N N N 43.172 -38.888 -1.385 -2.952 -2.225 -0.177 H3 OZ3 21 OZ3 HBT H13 H 0 1 N N N N N N 41.889 -38.687 -2.532 -4.229 -1.139 -0.289 HBT OZ3 22 OZ3 HBU H15 H 0 1 N N N N N N 45.390 -39.384 -2.127 -3.640 1.323 -0.204 HBU OZ3 23 OZ3 HA1 H16 H 0 1 N N N N N N 44.058 -40.307 -9.311 3.713 -0.755 1.002 HA1 OZ3 24 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OZ3 N CA SING N N 1 OZ3 CA CBO SING N N 2 OZ3 CBO CBP SING Y N 3 OZ3 CBO CBX DOUB Y N 4 OZ3 CBP CBQ DOUB Y N 5 OZ3 CBX CBW SING Y N 6 OZ3 CBQ CBR SING Y N 7 OZ3 CBW CBR DOUB Y N 8 OZ3 CBW CBV SING N N 9 OZ3 CBR CBS SING N N 10 OZ3 CBV NBU SING N N 11 OZ3 CBS NBU DOUB N N 12 OZ3 CBS NBT SING N N 13 OZ3 CA HA2 SING N N 14 OZ3 CBP HBP SING N N 15 OZ3 CBQ HBQ SING N N 16 OZ3 CBV HG8 SING N N 17 OZ3 CBV HBV SING N N 18 OZ3 CBX HBX SING N N 19 OZ3 N H SING N N 20 OZ3 N H2 SING N N 21 OZ3 NBT H3 SING N N 22 OZ3 NBT HBT SING N N 23 OZ3 NBU HBU SING N N 24 OZ3 CA HA1 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OZ3 InChI InChI 1.06 "InChI=1S/C9H11N3/c10-4-6-1-2-8-7(3-6)5-12-9(8)11/h1-3H,4-5,10H2,(H2,11,12)/p+1" OZ3 InChIKey InChI 1.06 WGTMTZNANKWNAF-UHFFFAOYSA-O OZ3 SMILES_CANONICAL CACTVS 3.385 "NCc1ccc2C(=[NH+]Cc2c1)N" OZ3 SMILES CACTVS 3.385 "NCc1ccc2C(=[NH+]Cc2c1)N" OZ3 SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CN)C[NH+]=C2N" OZ3 SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc2c(cc1CN)C[NH+]=C2N" # _pdbx_chem_comp_identifier.comp_id OZ3 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "5-(aminomethyl)-3~{H}-isoindol-2-ium-1-amine" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OZ3 "Create component" 2022-09-28 PDBE OZ3 "Modify linking type" 2022-10-06 PDBE OZ3 "Modify aromatic_flag" 2022-10-18 PDBE OZ3 "Initial release" 2023-10-04 RCSB OZ3 "Modify backbone" 2023-11-03 PDBE OZ3 "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id OZ3 _pdbx_chem_comp_pcm.modified_residue_id ? _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Non-standard residue" _pdbx_chem_comp_pcm.position "Amino-acid side chain and backbone" _pdbx_chem_comp_pcm.polypeptide_position C-terminal _pdbx_chem_comp_pcm.comp_id_linking_atom ? _pdbx_chem_comp_pcm.modified_residue_id_linking_atom ? _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #