data_OZI # _chem_comp.id OZI _chem_comp.name "(2~{S})-4-(2-chloranylethanoyl)-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C18 H18 Cl3 N3 O2 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-09-28 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 446.778 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OZI _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8B56 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OZI N1 N1 N 0 1 N N N N N N -21.579 4.442 24.781 -2.630 -1.832 0.660 N1 OZI 1 OZI N3 N2 N 0 1 N N N N N N -22.798 4.757 27.266 0.119 -1.645 1.071 N3 OZI 2 OZI C4 C1 C 0 1 Y N N N N N -21.280 8.365 33.308 -2.068 6.080 0.260 C4 OZI 3 OZI C5 C2 C 0 1 Y N N N N N -20.807 7.123 33.548 -1.461 6.313 -0.904 C5 OZI 4 OZI C6 C3 C 0 1 N N S N N N -21.332 4.747 27.162 -0.598 -0.495 0.502 C6 OZI 5 OZI C7 C4 C 0 1 N N N N N N -20.901 5.254 25.784 -2.053 -0.518 0.981 C7 OZI 6 OZI C8 C5 C 0 1 N N N N N N -20.938 3.561 23.995 -3.798 -1.930 -0.005 C8 OZI 7 OZI C13 C6 C 0 1 N N N N N N -23.033 4.574 24.802 -1.896 -3.036 1.079 C13 OZI 8 OZI C15 C7 C 0 1 Y N N N N N -23.457 4.195 28.393 1.487 -1.570 0.792 C15 OZI 9 OZI C17 C8 C 0 1 Y N N N N N -23.377 3.170 30.576 3.274 -1.342 -0.791 C17 OZI 10 OZI C20 C9 C 0 1 Y N N N N N -24.852 4.183 28.463 2.413 -1.657 1.823 C20 OZI 11 OZI N N3 N 0 1 N N N N N N -21.369 6.413 28.939 -0.429 1.972 0.554 N OZI 12 OZI C C10 C 0 1 N N N N N N -20.628 5.515 28.281 0.061 0.782 0.955 C OZI 13 OZI O O1 O 0 1 N N N N N N -19.441 5.295 28.542 1.032 0.740 1.680 O OZI 14 OZI C1 C11 C 0 1 N N N N N N -20.778 7.547 29.616 0.211 3.214 0.994 C1 OZI 15 OZI C14 C12 C 0 1 N N N N N N -23.475 5.294 26.074 -0.447 -2.914 0.596 C14 OZI 16 OZI C16 C13 C 0 1 Y N N N N N -22.721 3.671 29.463 1.921 -1.415 -0.518 C16 OZI 17 OZI C18 C14 C 0 1 Y N N N N N -24.758 3.143 30.627 4.195 -1.422 0.240 C18 OZI 18 OZI C19 C15 C 0 1 Y N N N N N -25.497 3.660 29.575 3.764 -1.583 1.544 C19 OZI 19 OZI C2 C16 C 0 1 Y N N N N N -20.917 7.590 31.114 -0.525 4.393 0.410 C2 OZI 20 OZI C3 C17 C 0 1 Y N N N N N -21.360 8.664 31.915 -1.551 5.020 0.986 C3 OZI 21 OZI C9 C18 C 0 1 N N N N N N -19.802 2.782 24.618 -4.369 -3.287 -0.330 C9 OZI 22 OZI O3 O2 O 0 1 N N N N N N -21.305 3.327 22.855 -4.390 -0.927 -0.343 O3 OZI 23 OZI S S1 S 0 1 Y N N N N N -20.442 6.271 32.105 -0.165 5.147 -1.138 S OZI 24 OZI CL CL1 CL 0 0 N N N N N N -22.433 2.637 31.940 3.819 -1.140 -2.427 CL OZI 25 OZI CL1 CL2 CL 0 0 N N N N N N -25.574 2.404 31.965 5.894 -1.322 -0.105 CL1 OZI 26 OZI H6 H1 H 0 1 N N N N N N -21.567 9.057 34.086 -2.897 6.676 0.613 H6 OZI 27 OZI H7 H2 H 0 1 N N N N N N -20.674 6.712 34.538 -1.726 7.097 -1.598 H7 OZI 28 OZI H H3 H 0 1 N N N N N N -21.001 3.701 27.235 -0.571 -0.553 -0.586 H OZI 29 OZI H9 H4 H 0 1 N N N N N N -19.811 5.155 25.672 -2.618 0.264 0.473 H9 OZI 30 OZI H8 H5 H 0 1 N N N N N N -21.187 6.310 25.667 -2.087 -0.356 2.059 H8 OZI 31 OZI H17 H6 H 0 1 N N N N N N -23.359 5.152 23.925 -1.915 -3.116 2.165 H17 OZI 32 OZI H18 H7 H 0 1 N N N N N N -23.490 3.574 24.772 -2.357 -3.918 0.635 H18 OZI 33 OZI H23 H8 H 0 1 N N N N N N -25.433 4.584 27.646 2.077 -1.782 2.842 H23 OZI 34 OZI H2 H9 H 0 1 N N N N N N -22.362 6.297 28.964 -1.206 2.006 -0.026 H2 OZI 35 OZI H4 H10 H 0 1 N N N N N N -19.703 7.552 29.381 0.184 3.271 2.082 H4 OZI 36 OZI H3 H11 H 0 1 N N N N N N -21.246 8.457 29.212 1.247 3.228 0.655 H3 OZI 37 OZI H20 H12 H 0 1 N N N N N N -23.236 6.364 25.980 -0.423 -2.938 -0.493 H20 OZI 38 OZI H19 H13 H 0 1 N N N N N N -24.561 5.170 26.195 0.139 -3.744 0.991 H19 OZI 39 OZI H21 H14 H 0 1 N N N N N N -21.642 3.657 29.421 1.203 -1.352 -1.322 H21 OZI 40 OZI H22 H15 H 0 1 N N N N N N -26.576 3.656 29.620 4.484 -1.651 2.346 H22 OZI 41 OZI H5 H16 H 0 1 N N N N N N -21.718 9.603 31.520 -1.947 4.726 1.947 H5 OZI 42 OZI H10 H17 H 0 1 N N N N N N -19.339 3.338 25.447 -3.664 -3.838 -0.952 H10 OZI 43 OZI H1 H18 H 0 1 N N N N N N -20.138 1.798 24.978 -4.545 -3.838 0.595 H1 OZI 44 OZI CL3 CL3 CL 0 0 N Y N N N N ? ? ? -5.926 -3.088 -1.217 CL3 OZI 45 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OZI O3 C8 DOUB N N 1 OZI C8 C9 SING N N 2 OZI C8 N1 SING N N 3 OZI N1 C13 SING N N 4 OZI N1 C7 SING N N 5 OZI C13 C14 SING N N 6 OZI C7 C6 SING N N 7 OZI C14 N3 SING N N 8 OZI C6 N3 SING N N 9 OZI C6 C SING N N 10 OZI N3 C15 SING N N 11 OZI C O DOUB N N 12 OZI C N SING N N 13 OZI C15 C20 DOUB Y N 14 OZI C15 C16 SING Y N 15 OZI C20 C19 SING Y N 16 OZI N C1 SING N N 17 OZI C16 C17 DOUB Y N 18 OZI C19 C18 DOUB Y N 19 OZI C1 C2 SING N N 20 OZI C17 C18 SING Y N 21 OZI C17 CL SING N N 22 OZI C18 CL1 SING N N 23 OZI C2 C3 DOUB Y N 24 OZI C2 S SING Y N 25 OZI C3 C4 SING Y N 26 OZI S C5 SING Y N 27 OZI C4 C5 DOUB Y N 28 OZI C4 H6 SING N N 29 OZI C5 H7 SING N N 30 OZI C6 H SING N N 31 OZI C7 H9 SING N N 32 OZI C7 H8 SING N N 33 OZI C13 H17 SING N N 34 OZI C13 H18 SING N N 35 OZI C20 H23 SING N N 36 OZI N H2 SING N N 37 OZI C1 H4 SING N N 38 OZI C1 H3 SING N N 39 OZI C14 H20 SING N N 40 OZI C14 H19 SING N N 41 OZI C16 H21 SING N N 42 OZI C19 H22 SING N N 43 OZI C3 H5 SING N N 44 OZI C9 H10 SING N N 45 OZI C9 H1 SING N N 46 OZI C9 CL3 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OZI InChI InChI 1.06 "InChI=1S/C18H18Cl3N3O2S/c19-9-17(25)23-5-6-24(12-3-4-14(20)15(21)8-12)16(11-23)18(26)22-10-13-2-1-7-27-13/h1-4,7-8,16H,5-6,9-11H2,(H,22,26)/t16-/m0/s1" OZI InChIKey InChI 1.06 DBKURSLDNAKNLU-INIZCTEOSA-N OZI SMILES_CANONICAL CACTVS 3.385 "ClCC(=O)N1CCN([C@@H](C1)C(=O)NCc2sccc2)c3ccc(Cl)c(Cl)c3" OZI SMILES CACTVS 3.385 "ClCC(=O)N1CCN([CH](C1)C(=O)NCc2sccc2)c3ccc(Cl)c(Cl)c3" OZI SMILES_CANONICAL "OpenEye OEToolkits" 3.1.0.0 "c1cc(sc1)CNC(=O)[C@@H]2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)CCl" OZI SMILES "OpenEye OEToolkits" 3.1.0.0 "c1cc(sc1)CNC(=O)C2CN(CCN2c3ccc(c(c3)Cl)Cl)C(=O)CCl" # _pdbx_chem_comp_identifier.comp_id OZI _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 3.1.0.0 _pdbx_chem_comp_identifier.identifier "(2~{S})-4-(2-chloranylethanoyl)-1-(3,4-dichlorophenyl)-~{N}-(thiophen-2-ylmethyl)piperazine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OZI "Create component" 2022-09-28 PDBE OZI "Other modification" 2022-09-29 PDBE OZI "Modify leaving atom flag" 2022-10-18 PDBE OZI "Initial release" 2023-08-09 RCSB OZI "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id OZI _pdbx_chem_comp_pcm.modified_residue_id CYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C9 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom SG _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #