data_OZV # _chem_comp.id OZV _chem_comp.name "5'-O-[(R)-hydroxy{[(4R,8S)-4,6,8-trihydroxy-2,4,6,8-tetraoxo-1,3,5,7,2lambda~5~,4lambda~5~,6lambda~5~,8lambda~5~-tetroxatetraphosphocan-2-yl]oxy}phosphoryl]adenosine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H16 N5 O18 P5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-22 _chem_comp.pdbx_modified_date 2019-11-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 649.126 _chem_comp.one_letter_code ? _chem_comp.three_letter_code OZV _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6PVW _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal OZV O3 O1 O 0 1 N N N -14.932 -13.027 13.913 3.944 -0.733 -2.577 O3 OZV 1 OZV C4 C1 C 0 1 Y N N -13.210 -11.654 20.429 -7.044 -0.850 -0.495 C4 OZV 2 OZV C5 C2 C 0 1 Y N N -13.473 -12.567 21.455 -7.388 -1.874 0.403 C5 OZV 3 OZV C6 C3 C 0 1 Y N N -14.443 -12.214 22.401 -8.615 -2.533 0.219 C6 OZV 4 OZV N1 N1 N 0 1 Y N N -15.069 -11.039 22.286 -9.390 -2.158 -0.794 N1 OZV 5 OZV C8 C4 C 0 1 Y N N -11.941 -13.443 20.213 -5.451 -1.110 1.007 C8 OZV 6 OZV N3 N2 N 0 1 Y N N -13.881 -10.506 20.389 -7.884 -0.543 -1.478 N3 OZV 7 OZV O O2 O 0 1 N N N -12.679 -14.071 14.091 5.587 -2.135 -1.022 O OZV 8 OZV C2 C5 C 0 1 Y N N -14.786 -10.217 21.299 -9.023 -1.189 -1.612 C2 OZV 9 OZV N6 N3 N 0 1 N N N -14.723 -13.086 23.425 -9.008 -3.551 1.071 N6 OZV 10 OZV O1 O3 O 0 1 N N N -13.634 -13.487 11.858 6.292 -1.289 -3.329 O1 OZV 11 OZV O2 O4 O 0 1 N N N -12.847 -11.822 13.580 6.056 0.451 -1.471 O2 OZV 12 OZV "C1'" C6 C 0 1 N N R -11.635 -11.660 18.466 -5.041 0.681 -0.722 "C1'" OZV 13 OZV "C2'" C7 C 0 1 N N R -10.365 -10.834 18.795 -5.495 2.066 -0.193 "C2'" OZV 14 OZV "C3'" C8 C 0 1 N N S -9.237 -11.681 18.167 -4.235 2.933 -0.432 "C3'" OZV 15 OZV "C4'" C9 C 0 1 N N R -10.011 -12.268 16.972 -3.087 1.911 -0.539 "C4'" OZV 16 OZV "C5'" C10 C 0 1 N N N -9.252 -13.411 16.308 -2.032 2.200 0.530 "C5'" OZV 17 OZV N7 N4 N 0 1 Y N N -12.674 -13.644 21.266 -6.373 -1.982 1.294 N7 OZV 18 OZV N9 N5 N 0 1 Y N N -12.236 -12.232 19.668 -5.815 -0.391 -0.092 N9 OZV 19 OZV O01 O5 O 0 1 N N N -10.478 -13.998 12.796 3.546 -1.387 0.481 O01 OZV 20 OZV O02 O6 O 0 1 N N N -11.716 -9.804 14.214 6.223 0.465 1.042 O02 OZV 21 OZV O03 O7 O 0 1 N N N -10.451 -11.793 11.869 3.363 0.249 2.469 O03 OZV 22 OZV O04 O8 O 0 1 N N N -12.560 -11.441 15.867 5.936 2.688 -0.106 O04 OZV 23 OZV O1A O9 O 0 1 N N N -8.513 -14.870 14.163 -0.054 0.914 2.809 O1A OZV 24 OZV "O2'" O10 O 0 1 N N N -10.436 -9.550 18.173 -6.605 2.559 -0.944 "O2'" OZV 25 OZV O2A O11 O 0 1 N N N -6.328 -13.698 13.966 0.949 2.697 1.330 O2A OZV 26 OZV "O3'" O12 O 0 1 N N N -8.136 -10.887 17.727 -4.362 3.675 -1.647 "O3'" OZV 27 OZV O3A O13 O 0 1 N N N -8.497 -12.566 13.090 1.466 0.294 0.756 O3A OZV 28 OZV O4 O14 O 0 1 N N N -10.599 -12.063 14.342 3.974 0.979 0.070 O4 OZV 29 OZV "O4'" O15 O 0 1 N N N -11.214 -12.740 17.602 -3.654 0.608 -0.326 "O4'" OZV 30 OZV O5 O16 O 0 1 N N N -10.895 -15.532 14.783 4.794 -3.620 0.990 O5 OZV 31 OZV "O5'" O17 O 0 1 N N N -8.100 -12.851 15.683 -0.925 1.311 0.361 "O5'" OZV 32 OZV O6 O18 O 0 1 N N N -12.050 -15.951 12.634 5.888 -1.384 1.363 O6 OZV 33 OZV P01 P1 P 0 1 N N N -11.852 -11.264 14.557 5.550 1.125 -0.099 P01 OZV 34 OZV P02 P2 P 0 1 N N N -11.432 -14.908 13.520 4.964 -2.109 0.463 P02 OZV 35 OZV P1 P3 P 0 1 N N N -13.555 -13.138 13.315 5.481 -0.936 -2.143 P1 OZV 36 OZV P2 P4 P 0 1 N N N -10.000 -12.580 13.064 3.034 0.060 1.039 P2 OZV 37 OZV PA P5 P 0 1 N N N -7.910 -13.526 14.231 0.372 1.334 1.314 PA OZV 38 OZV H1 H1 H 0 1 N N N -15.583 -13.201 13.244 3.540 -1.518 -2.972 H1 OZV 39 OZV H2 H2 H 0 1 N N N -11.206 -14.134 19.827 -4.530 -0.979 1.556 H2 OZV 40 OZV H3 H3 H 0 1 N N N -15.313 -9.276 21.234 -9.683 -0.915 -2.422 H3 OZV 41 OZV H4 H4 H 0 1 N N N -15.430 -12.694 24.014 -8.434 -3.816 1.806 H4 OZV 42 OZV H5 H5 H 0 1 N N N -15.049 -13.952 23.046 -9.857 -3.998 0.933 H5 OZV 43 OZV H6 H6 H 0 1 N N N -12.359 -11.014 17.949 -5.136 0.635 -1.807 H6 OZV 44 OZV H7 H7 H 0 1 N N N -10.229 -10.760 19.884 -5.737 2.016 0.869 H7 OZV 45 OZV H8 H8 H 0 1 N N N -8.926 -12.480 18.856 -4.070 3.606 0.409 H8 OZV 46 OZV H9 H9 H 0 1 N N N -10.225 -11.477 16.238 -2.637 1.962 -1.530 H9 OZV 47 OZV H10 H10 H 0 1 N N N -9.889 -13.898 15.555 -1.689 3.230 0.433 H10 OZV 48 OZV H11 H11 H 0 1 N N N -8.948 -14.150 17.064 -2.467 2.054 1.519 H11 OZV 49 OZV H12 H12 H 0 1 N N N -12.784 -10.590 16.224 6.885 2.859 -0.179 H12 OZV 50 OZV H13 H13 H 0 1 N N N -7.837 -15.512 13.982 -0.441 0.030 2.874 H13 OZV 51 OZV H14 H14 H 0 1 N N N -11.134 -9.043 18.571 -6.926 3.424 -0.651 H14 OZV 52 OZV H15 H15 H 0 1 N N N -7.676 -10.537 18.481 -5.106 4.293 -1.654 H15 OZV 53 OZV H16 H16 H 0 1 N N N -11.056 -16.468 14.767 5.618 -4.126 1.008 H16 OZV 54 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal OZV O1 P1 DOUB N N 1 OZV O03 P2 DOUB N N 2 OZV O6 P02 DOUB N N 3 OZV O01 P2 SING N N 4 OZV O01 P02 SING N N 5 OZV P2 O3A SING N N 6 OZV P2 O4 SING N N 7 OZV O3A PA SING N N 8 OZV P1 O2 SING N N 9 OZV P1 O3 SING N N 10 OZV P1 O SING N N 11 OZV P02 O SING N N 12 OZV P02 O5 SING N N 13 OZV O2 P01 SING N N 14 OZV O2A PA DOUB N N 15 OZV O1A PA SING N N 16 OZV O02 P01 DOUB N N 17 OZV PA "O5'" SING N N 18 OZV O4 P01 SING N N 19 OZV P01 O04 SING N N 20 OZV "O5'" "C5'" SING N N 21 OZV "C5'" "C4'" SING N N 22 OZV "C4'" "O4'" SING N N 23 OZV "C4'" "C3'" SING N N 24 OZV "O4'" "C1'" SING N N 25 OZV "O3'" "C3'" SING N N 26 OZV "C3'" "C2'" SING N N 27 OZV "O2'" "C2'" SING N N 28 OZV "C1'" "C2'" SING N N 29 OZV "C1'" N9 SING N N 30 OZV N9 C8 SING Y N 31 OZV N9 C4 SING Y N 32 OZV C8 N7 DOUB Y N 33 OZV N3 C4 DOUB Y N 34 OZV N3 C2 SING Y N 35 OZV C4 C5 SING Y N 36 OZV N7 C5 SING Y N 37 OZV C2 N1 DOUB Y N 38 OZV C5 C6 DOUB Y N 39 OZV N1 C6 SING Y N 40 OZV C6 N6 SING N N 41 OZV O3 H1 SING N N 42 OZV C8 H2 SING N N 43 OZV C2 H3 SING N N 44 OZV N6 H4 SING N N 45 OZV N6 H5 SING N N 46 OZV "C1'" H6 SING N N 47 OZV "C2'" H7 SING N N 48 OZV "C3'" H8 SING N N 49 OZV "C4'" H9 SING N N 50 OZV "C5'" H10 SING N N 51 OZV "C5'" H11 SING N N 52 OZV O04 H12 SING N N 53 OZV O1A H13 SING N N 54 OZV "O2'" H14 SING N N 55 OZV "O3'" H15 SING N N 56 OZV O5 H16 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor OZV SMILES ACDLabs 12.01 "OP4(OP(OP(=O)(OP(O)(=O)OCC3C(C(C(n2c1c(c(N)ncn1)nc2)O3)O)O)OP(O4)(=O)O)(O)=O)=O" OZV InChI InChI 1.03 "InChI=1S/C10H16N5O18P5/c11-8-5-9(13-2-12-8)15(3-14-5)10-7(17)6(16)4(28-10)1-27-34(18,19)31-38(26)32-36(22,23)29-35(20,21)30-37(24,25)33-38/h2-4,6-7,10,16-17H,1H2,(H,18,19)(H,20,21)(H,22,23)(H,24,25)(H2,11,12,13)/t4-,6-,7-,10-/m1/s1" OZV InChIKey InChI 1.03 WWRLCZMRKAWYHG-KQYNXXCUSA-N OZV SMILES_CANONICAL CACTVS 3.385 "Nc1ncnc2n(cnc12)[C@@H]3O[C@H](CO[P](O)(=O)O[P]4(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O4)[C@@H](O)[C@H]3O" OZV SMILES CACTVS 3.385 "Nc1ncnc2n(cnc12)[CH]3O[CH](CO[P](O)(=O)O[P]4(=O)O[P](O)(=O)O[P](O)(=O)O[P](O)(=O)O4)[CH](O)[CH]3O" OZV SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)[C@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)OP4(=O)OP(=O)(OP(=O)(OP(=O)(O4)O)O)O)O)O)N" OZV SMILES "OpenEye OEToolkits" 2.0.7 "c1nc(c2c(n1)n(cn2)C3C(C(C(O3)COP(=O)(O)OP4(=O)OP(=O)(OP(=O)(OP(=O)(O4)O)O)O)O)O)N" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier OZV "SYSTEMATIC NAME" ACDLabs 12.01 "5'-O-[(R)-hydroxy{[(4R,8S)-4,6,8-trihydroxy-2,4,6,8-tetraoxo-1,3,5,7,2lambda~5~,4lambda~5~,6lambda~5~,8lambda~5~-tetroxatetraphosphocan-2-yl]oxy}phosphoryl]adenosine" OZV "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl [4,6,8-tris(oxidanyl)-2,4,6,8-tetrakis(oxidanylidene)-1,3,5,7,2$l^{5},4$l^{5},6$l^{5},8$l^{5}-tetraoxatetraphosphocan-2-yl] hydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site OZV "Create component" 2019-07-22 RCSB OZV "Initial release" 2019-11-06 RCSB ##