data_P # _chem_comp.id P _chem_comp.name ;2'-DEOXY-N1,N2-PROPANO GUANOSINE MONOPHOSPHATE ; _chem_comp.type "DNA LINKING" _chem_comp.pdbx_type ATOMN _chem_comp.formula "C13 H18 N5 O7 P" _chem_comp.mon_nstd_parent_comp_id DG _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 387.285 _chem_comp.one_letter_code G _chem_comp.three_letter_code P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1AG3 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P P P P 0 1 N N N 0.190 12.188 12.788 5.770 -0.782 -0.504 P P 1 P OP1 O1P O 0 1 N N N -0.223 13.605 12.890 5.699 -1.787 0.581 OP1 P 2 P OP2 O2P O 0 1 N N N 1.378 11.709 13.533 6.939 0.276 -0.180 OP2 P 3 P OP3 O3P O 0 1 N Y N 0.385 11.833 11.226 6.085 -1.521 -1.899 OP3 P 4 P "O5'" "O5'" O 0 1 N N N -1.063 11.270 13.201 4.361 -0.010 -0.612 "O5'" P 5 P "C5'" "C5'" C 0 1 N N N -2.322 11.438 12.545 3.752 0.657 0.495 "C5'" P 6 P "C4'" "C4'" C 0 1 N N R -3.285 10.309 12.884 2.430 1.283 0.049 "C4'" P 7 P "O4'" "O4'" O 0 1 N N N -2.725 9.031 12.507 1.474 0.259 -0.299 "O4'" P 8 P "C3'" "C3'" C 0 1 N N S -3.573 10.286 14.376 1.752 2.025 1.229 "C3'" P 9 P "O3'" "O3'" O 0 1 N N N -4.951 10.577 14.634 2.237 3.365 1.335 "O3'" P 10 P "C2'" "C2'" C 0 1 N N N -3.210 8.902 14.846 0.262 2.009 0.809 "C2'" P 11 P "C1'" "C1'" C 0 1 N N R -2.607 8.171 13.660 0.169 0.855 -0.208 "C1'" P 12 P N9 N9 N 0 1 Y N N -1.195 7.840 13.924 -0.802 -0.140 0.255 N9 P 13 P C8 C8 C 0 1 Y N N -0.182 8.650 14.301 -0.523 -1.266 0.975 C8 P 14 P N7 N7 N 0 1 Y N N 0.973 8.113 14.490 -1.623 -1.917 1.218 N7 P 15 P C5 C5 C 0 1 Y N N 0.715 6.767 14.208 -2.669 -1.251 0.672 C5 P 16 P C6 C6 C 0 1 N N N 1.602 5.659 14.241 -4.063 -1.472 0.625 C6 P 17 P O6 O6 O 0 1 N N N 2.798 5.675 14.530 -4.552 -2.468 1.131 O6 P 18 P N1 N1 N 0 1 N N N 0.992 4.452 13.899 -4.849 -0.556 0.007 N1 P 19 P C2 C2 C 0 1 N N N -0.455 4.376 13.539 -4.284 0.504 -0.635 C2 P 20 P N2 N2 N 0 1 N N N -0.990 3.138 13.212 -5.053 1.375 -1.375 N2 P 21 P N3 N3 N 0 1 N N N -1.244 5.455 13.521 -2.983 0.720 -0.593 N3 P 22 P C4 C4 C 0 1 Y N N -0.612 6.593 13.859 -2.155 -0.108 0.051 C4 P 23 P C6A C6A C 0 1 N N N -0.230 1.900 13.458 -6.506 1.406 -1.163 C6A P 24 P C7A C7A C 0 1 N N N 1.219 2.115 13.057 -6.991 -0.050 -1.095 C7A P 25 P C8A C8A C 0 1 N N N 1.819 3.221 13.910 -6.301 -0.729 0.089 C8A P 26 P HOP2 HOP2 H 0 0 N N N 2.108 11.606 12.934 7.043 0.965 -0.851 HOP2 P 27 P HOP3 HOP3 H 0 0 N N N 0.423 12.636 10.721 6.921 -2.008 -1.907 HOP3 P 28 P "H5'" "H5'1" H 0 1 N N N -2.766 12.391 12.869 3.563 -0.062 1.293 "H5'" P 29 P "H5''" "H5'2" H 0 0 N N N -2.149 11.430 11.459 4.419 1.438 0.861 "H5''" P 30 P "H4'" "H4'" H 0 1 N N N -4.216 10.486 12.326 2.591 1.959 -0.791 "H4'" P 31 P "H3'" "H3'" H 0 1 N N N -2.992 11.052 14.911 1.899 1.485 2.164 "H3'" P 32 P "HO3'" "HO3'" H 0 0 N Y N -5.091 10.641 15.571 1.842 3.871 2.059 "HO3'" P 33 P "H2'" "H2'1" H 0 1 N N N -2.482 8.958 15.669 -0.375 1.811 1.671 "H2'" P 34 P "H2''" "H2'2" H 0 0 N N N -4.098 8.372 15.221 -0.013 2.954 0.340 "H2''" P 35 P "H1'" "H1'" H 0 1 N N N -3.138 7.225 13.481 -0.131 1.242 -1.182 "H1'" P 36 P H8 H8 H 0 1 N N N -0.335 9.710 14.439 0.463 -1.570 1.295 H8 P 37 P H2 H2 H 0 1 N N N -1.902 3.086 12.805 -4.640 1.961 -2.029 H2 P 38 P H6A1 H6A1 H 0 0 N N N -0.282 1.642 14.526 -6.733 1.916 -0.227 H6A1 P 39 P H6A2 H6A2 H 0 0 N N N -0.659 1.079 12.865 -6.991 1.919 -1.993 H6A2 P 40 P H7A1 H7A1 H 0 0 N N N 1.785 1.184 13.211 -8.072 -0.071 -0.952 H7A1 P 41 P H7A2 H7A2 H 0 0 N N N 1.268 2.401 11.996 -6.732 -0.568 -2.018 H7A2 P 42 P H8A1 H8A1 H 0 0 N N N 2.816 3.466 13.515 -6.537 -1.793 0.080 H8A1 P 43 P H8A2 H8A2 H 0 0 N N N 1.871 2.858 14.947 -6.664 -0.289 1.017 H8A2 P 44 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P P OP1 DOUB N N 1 P P OP2 SING N N 2 P P OP3 SING N N 3 P P "O5'" SING N N 4 P OP2 HOP2 SING N N 5 P OP3 HOP3 SING N N 6 P "O5'" "C5'" SING N N 7 P "C5'" "C4'" SING N N 8 P "C5'" "H5'" SING N N 9 P "C5'" "H5''" SING N N 10 P "C4'" "O4'" SING N N 11 P "C4'" "C3'" SING N N 12 P "C4'" "H4'" SING N N 13 P "O4'" "C1'" SING N N 14 P "C3'" "O3'" SING N N 15 P "C3'" "C2'" SING N N 16 P "C3'" "H3'" SING N N 17 P "O3'" "HO3'" SING N N 18 P "C2'" "C1'" SING N N 19 P "C2'" "H2'" SING N N 20 P "C2'" "H2''" SING N N 21 P "C1'" N9 SING N N 22 P "C1'" "H1'" SING N N 23 P N9 C8 SING Y N 24 P N9 C4 SING Y N 25 P C8 N7 DOUB Y N 26 P C8 H8 SING N N 27 P N7 C5 SING Y N 28 P C5 C6 SING N N 29 P C5 C4 DOUB Y N 30 P C6 O6 DOUB N N 31 P C6 N1 SING N N 32 P N1 C2 SING N N 33 P N1 C8A SING N N 34 P C2 N2 SING N N 35 P C2 N3 DOUB N N 36 P N2 C6A SING N N 37 P N2 H2 SING N N 38 P N3 C4 SING N N 39 P C6A C7A SING N N 40 P C6A H6A1 SING N N 41 P C6A H6A2 SING N N 42 P C7A C8A SING N N 43 P C7A H7A1 SING N N 44 P C7A H7A2 SING N N 45 P C8A H8A1 SING N N 46 P C8A H8A2 SING N N 47 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P SMILES ACDLabs 10.04 "O=C2c3ncn(c3N=C1NCCCN12)C4OC(C(O)C4)COP(=O)(O)O" P SMILES_CANONICAL CACTVS 3.341 "O[C@H]1C[C@@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3C(=O)N4CCCNC4=Nc23" P SMILES CACTVS 3.341 "O[CH]1C[CH](O[CH]1CO[P](O)(O)=O)n2cnc3C(=O)N4CCCNC4=Nc23" P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1[C@H]3C[C@@H]([C@H](O3)COP(=O)(O)O)O)N=C4NCCCN4C2=O" P SMILES "OpenEye OEToolkits" 1.5.0 "c1nc2c(n1C3CC(C(O3)COP(=O)(O)O)O)N=C4NCCCN4C2=O" P InChI InChI 1.03 "InChI=1S/C13H18N5O7P/c19-7-4-9(25-8(7)5-24-26(21,22)23)18-6-15-10-11(18)16-13-14-2-1-3-17(13)12(10)20/h6-9,19H,1-5H2,(H,14,16)(H2,21,22,23)/t7-,8+,9+/m0/s1" P InChIKey InChI 1.03 KFIWNSGDRAITKG-DJLDLDEBSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P "SYSTEMATIC NAME" ACDLabs 10.04 "3-(2-deoxy-5-O-phosphono-beta-D-erythro-pentofuranosyl)-5,6,7,8-tetrahydropyrimido[1,2-a]purin-10(3H)-one" P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,5R)-3-hydroxy-5-(10-oxo-5,6,7,8-tetrahydropyrimido[1,2-a]purin-3-yl)oxolan-2-yl]methyl dihydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P "Create component" 1999-07-08 RCSB P "Modify descriptor" 2011-06-04 RCSB #