data_P05 # _chem_comp.id P05 _chem_comp.name "D-phenylalanyl-N-(pyridin-4-ylmethyl)-L-prolinamide" _chem_comp.type peptide-like _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H24 N4 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2011-07-26 _chem_comp.pdbx_modified_date 2012-06-15 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.430 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P05 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3SV2 _chem_comp.pdbx_subcomponent_list "DPN PRO NNW" _chem_comp.pdbx_processing_site PDBJ # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P05 N21 N21 N 0 1 N N N 16.418 -15.520 23.181 -3.065 2.025 -0.556 N DPN 1 P05 C8 C8 C 0 1 N N R 17.719 -14.876 23.136 -2.728 0.636 -0.216 CA DPN 2 P05 C9 C9 C 0 1 N N N 17.544 -13.494 22.539 -1.297 0.566 0.251 C DPN 3 P05 O25 O25 O 0 1 N N N 16.628 -12.761 22.923 -0.737 1.568 0.643 O DPN 4 P05 C7 C7 C 0 1 N N N 18.227 -14.785 24.575 -3.654 0.146 0.899 CB DPN 5 P05 C4 C4 C 0 1 Y N N 19.632 -14.248 24.642 -5.072 0.100 0.392 CG DPN 6 P05 C3 C3 C 0 1 Y N N 19.864 -13.046 25.305 -5.557 -1.051 -0.201 CD1 DPN 7 P05 C5 C5 C 0 1 Y N N 20.693 -14.933 24.050 -5.888 1.208 0.519 CD2 DPN 8 P05 C2 C2 C 0 1 Y N N 21.151 -12.526 25.369 -6.858 -1.094 -0.666 CE1 DPN 9 P05 C6 C6 C 0 1 Y N N 21.978 -14.417 24.137 -7.189 1.165 0.055 CE2 DPN 10 P05 C1 C1 C 0 1 Y N N 22.217 -13.207 24.787 -7.674 0.014 -0.538 CZ DPN 11 P05 N22 N22 N 0 1 N N N 18.388 -13.096 21.583 -0.640 -0.611 0.233 N PRO 12 P05 C13 C13 C 0 1 N N S 18.190 -11.778 20.980 0.752 -0.821 0.659 CA PRO 13 P05 C14 C14 C 0 1 N N N 16.814 -11.676 20.386 1.680 -0.004 -0.203 C PRO 14 P05 O26 O26 O 0 1 N N N 16.324 -12.604 19.739 1.229 0.701 -1.081 O PRO 15 P05 C12 C12 C 0 1 N N N 19.213 -11.668 19.866 1.062 -2.323 0.486 CB PRO 16 P05 C11 C11 C 0 1 N N N 20.239 -12.727 20.187 -0.347 -2.973 0.508 CG PRO 17 P05 C10 C10 C 0 1 N N N 19.508 -13.826 20.968 -1.196 -1.899 -0.216 CD PRO 18 P05 C15 C15 C 0 1 N N N 14.827 -10.223 20.103 3.913 0.738 -0.835 C15 NNW 19 P05 C16 C16 C 0 1 Y N N 13.765 -10.529 21.130 5.338 0.502 -0.403 C16 NNW 20 P05 C17 C17 C 0 1 Y N N 13.185 -9.525 21.913 6.091 -0.515 -0.969 C17 NNW 21 P05 C18 C18 C 0 1 Y N N 12.207 -9.874 22.834 7.395 -0.701 -0.549 C18 NNW 22 P05 C19 C19 C 0 1 Y N N 12.361 -12.122 22.219 7.236 1.054 0.935 C19 NNW 23 P05 C20 C20 C 0 1 Y N N 13.352 -11.847 21.287 5.927 1.300 0.565 C20 NNW 24 P05 N23 N23 N 0 1 N N N 16.161 -10.529 20.591 3.011 -0.056 0.002 N23 NNW 25 P05 N24 N24 N 0 1 Y N N 11.808 -11.151 22.953 7.921 0.074 0.379 N24 NNW 26 P05 HN21 HN21 H 0 0 N N N 16.052 -15.598 22.254 -2.955 2.630 0.244 H DPN 27 P05 HN2A HN2A H 0 0 N N N 16.511 -16.432 23.580 -2.511 2.351 -1.334 H2 DPN 28 P05 H8 H8 H 0 1 N N N 18.440 -15.436 22.522 -2.855 0.006 -1.096 HA DPN 29 P05 H7 H7 H 0 1 N N N 18.214 -15.792 25.017 -3.593 0.827 1.748 HB2 DPN 30 P05 H7A H7A H 0 1 N N N 17.565 -14.112 25.140 -3.347 -0.853 1.213 HB3 DPN 31 P05 H3 H3 H 0 1 N N N 19.044 -12.518 25.769 -4.919 -1.918 -0.300 HD1 DPN 32 P05 H5 H5 H 0 1 N N N 20.515 -15.861 23.526 -5.509 2.107 0.982 HD2 DPN 33 P05 H2 H2 H 0 1 N N N 21.326 -11.587 25.874 -7.237 -1.993 -1.129 HE1 DPN 34 P05 H6 H6 H 0 1 N N N 22.802 -14.959 23.696 -7.827 2.031 0.155 HE2 DPN 35 P05 H1 H1 H 0 1 N N N 23.217 -12.803 24.839 -8.689 -0.017 -0.905 HZ DPN 36 P05 H13 H13 H 0 1 N N N 18.301 -10.982 21.731 0.870 -0.536 1.704 HA PRO 37 P05 H12 H12 H 0 1 N N N 19.669 -10.667 19.844 1.669 -2.689 1.314 HB2 PRO 38 P05 H12A H12A H 0 0 N N N 18.751 -11.848 18.884 1.557 -2.507 -0.468 HB3 PRO 39 P05 H11 H11 H 0 1 N N N 21.052 -12.302 20.793 -0.693 -3.120 1.531 HG2 PRO 40 P05 H11A H11A H 0 0 N N N 20.670 -13.136 19.262 -0.352 -3.913 -0.043 HG3 PRO 41 P05 H10 H10 H 0 1 N N N 19.156 -14.632 20.307 -1.094 -2.000 -1.297 HD2 PRO 42 P05 H10A H10A H 0 0 N N N 20.158 -14.290 21.725 -2.243 -1.983 0.076 HD3 PRO 43 P05 H15 H15 H 0 1 N N N 14.633 -10.829 19.206 3.672 1.796 -0.728 H15 NNW 44 P05 H15A H15A H 0 0 N N N 14.780 -9.152 19.857 3.796 0.442 -1.878 H15A NNW 45 P05 H17 H17 H 0 1 N N N 13.493 -8.496 21.803 5.666 -1.153 -1.729 H17 NNW 46 P05 H18 H18 H 0 1 N N N 11.764 -9.113 23.459 7.988 -1.491 -0.984 H18 NNW 47 P05 H19 H19 H 0 1 N N N 12.030 -13.141 22.354 7.702 1.671 1.689 H19 NNW 48 P05 H20 H20 H 0 1 N N N 13.792 -12.638 20.698 5.371 2.104 1.024 H20 NNW 49 P05 HN23 HN23 H 0 0 N N N 16.628 -9.823 21.124 3.372 -0.620 0.705 HN23 NNW 50 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P05 C1 C2 DOUB Y N 1 P05 C1 C6 SING Y N 2 P05 C2 C3 SING Y N 3 P05 C3 C4 DOUB Y N 4 P05 C4 C5 SING Y N 5 P05 C4 C7 SING N N 6 P05 C5 C6 DOUB Y N 7 P05 C7 C8 SING N N 8 P05 C8 C9 SING N N 9 P05 C8 N21 SING N N 10 P05 C9 N22 SING N N 11 P05 C9 O25 DOUB N N 12 P05 C10 C11 SING N N 13 P05 C10 N22 SING N N 14 P05 C11 C12 SING N N 15 P05 C12 C13 SING N N 16 P05 C13 C14 SING N N 17 P05 C13 N22 SING N N 18 P05 C14 N23 SING N N 19 P05 C14 O26 DOUB N N 20 P05 C15 C16 SING N N 21 P05 C15 N23 SING N N 22 P05 C16 C17 DOUB Y N 23 P05 C16 C20 SING Y N 24 P05 C17 C18 SING Y N 25 P05 C18 N24 DOUB Y N 26 P05 C19 C20 DOUB Y N 27 P05 C19 N24 SING Y N 28 P05 C1 H1 SING N N 29 P05 C2 H2 SING N N 30 P05 C3 H3 SING N N 31 P05 C5 H5 SING N N 32 P05 C6 H6 SING N N 33 P05 C7 H7 SING N N 34 P05 C7 H7A SING N N 35 P05 C8 H8 SING N N 36 P05 C10 H10 SING N N 37 P05 C10 H10A SING N N 38 P05 C11 H11 SING N N 39 P05 C11 H11A SING N N 40 P05 C12 H12 SING N N 41 P05 C12 H12A SING N N 42 P05 C13 H13 SING N N 43 P05 C15 H15 SING N N 44 P05 C15 H15A SING N N 45 P05 C17 H17 SING N N 46 P05 C18 H18 SING N N 47 P05 C19 H19 SING N N 48 P05 C20 H20 SING N N 49 P05 N21 HN21 SING N N 50 P05 N21 HN2A SING N N 51 P05 N23 HN23 SING N N 52 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P05 SMILES ACDLabs 12.01 "O=C(NCc1ccncc1)C3N(C(=O)C(N)Cc2ccccc2)CCC3" P05 InChI InChI 1.03 "InChI=1S/C20H24N4O2/c21-17(13-15-5-2-1-3-6-15)20(26)24-12-4-7-18(24)19(25)23-14-16-8-10-22-11-9-16/h1-3,5-6,8-11,17-18H,4,7,12-14,21H2,(H,23,25)/t17-,18+/m1/s1" P05 InChIKey InChI 1.03 NYODECMUQISAKD-MSOLQXFVSA-N P05 SMILES_CANONICAL CACTVS 3.370 "N[C@H](Cc1ccccc1)C(=O)N2CCC[C@H]2C(=O)NCc3ccncc3" P05 SMILES CACTVS 3.370 "N[CH](Cc1ccccc1)C(=O)N2CCC[CH]2C(=O)NCc3ccncc3" P05 SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)C[C@H](C(=O)N2CCC[C@H]2C(=O)NCc3ccncc3)N" P05 SMILES "OpenEye OEToolkits" 1.7.2 "c1ccc(cc1)CC(C(=O)N2CCCC2C(=O)NCc3ccncc3)N" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P05 "SYSTEMATIC NAME" ACDLabs 12.01 "D-phenylalanyl-N-(pyridin-4-ylmethyl)-L-prolinamide" P05 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "(2S)-1-[(2R)-2-azanyl-3-phenyl-propanoyl]-N-(pyridin-4-ylmethyl)pyrrolidine-2-carboxamide" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P05 "Create component" 2011-07-26 PDBJ #