data_P1T
#
_chem_comp.id P1T
_chem_comp.name "2-[({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)AMINO]ACRYLIC ACID"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C11 H15 N2 O7 P"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2006-09-05
_chem_comp.pdbx_modified_date 2024-09-27
_chem_comp.pdbx_ambiguous_flag ?
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 318.220
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P1T
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details ?
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 2HOX
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
_chem_comp.pdbx_pcm Y
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.pdbx_backbone_atom_flag
_chem_comp_atom.pdbx_n_terminal_atom_flag
_chem_comp_atom.pdbx_c_terminal_atom_flag
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P1T OP1 OP1 O 0 1 N N N N N N 15.469 -9.747 4.456 0.720 1.252 -2.995 OP1 P1T 1
P1T P P P 0 1 N N N N N N 14.123 -10.234 4.918 0.201 -0.278 -2.924 P P1T 2
P1T OP2 OP2 O 0 1 N N N N N N 12.961 -9.551 4.291 0.806 -1.209 -3.933 OP2 P1T 3
P1T OP3 OP3 O 0 1 N N N N N N 13.944 -10.189 6.370 -1.407 -0.129 -3.009 OP3 P1T 4
P1T OP4 OP4 O 0 1 N N N N N N 13.845 -11.796 4.638 0.438 -0.693 -1.380 OP4 P1T 5
P1T C5A C5A C 0 1 N N N N N N 14.345 -12.489 3.572 -0.107 0.143 -0.365 C5A P1T 6
P1T C5 C5 C 0 1 Y N N N N N 14.226 -14.008 3.615 0.226 -0.420 0.973 C5 P1T 7
P1T C6 C6 C 0 1 Y N N N N N 15.103 -14.721 4.401 -0.632 -1.322 1.580 C6 P1T 8
P1T N1 N1 N 0 1 Y N N N N N 15.101 -16.064 4.422 -0.409 -1.882 2.791 N1 P1T 9
P1T C2 C2 C 0 1 Y N N N N N 14.251 -16.774 3.683 0.730 -1.516 3.421 C2 P1T 10
P1T C2A C2A C 0 1 N N N N N N 14.235 -18.286 3.671 0.964 -2.140 4.757 C2A P1T 11
P1T C3 C3 C 0 1 Y N N N N N 13.322 -16.057 2.866 1.652 -0.623 2.900 C3 P1T 12
P1T O3A O3A O 0 1 N N N N N N 12.480 -16.801 2.118 2.779 -0.297 3.586 O3A P1T 13
P1T C4 C4 C 0 1 Y N N N N N 13.278 -14.680 2.822 1.388 -0.068 1.652 C4 P1T 14
P1T C4A C4A C 0 1 N N N N N N 12.359 -14.013 1.843 2.351 0.901 1.046 C4A P1T 15
P1T N N N 0 1 N N N N N N 12.232 -14.501 0.656 2.055 2.262 1.410 N P1T 16
P1T CA CA C 0 1 N N N N N N 11.464 -13.967 -0.352 2.916 3.037 2.068 CA P1T 17
P1T CB CB C 0 1 N N N N N N 10.874 -12.805 -0.251 2.570 4.024 2.909 CB P1T 18
P1T C C C 0 1 N N N N N N 11.331 -14.664 -1.640 4.373 2.810 1.870 C P1T 19
P1T O O O 0 1 N N N N N N 11.921 -15.745 -1.730 5.068 3.144 2.985 O P1T 20
P1T OXT OXT O 0 1 N N N N N N 10.739 -14.117 -2.647 4.894 2.381 0.852 OXT P1T 21
P1T HOP1 HOP1 H 0 0 N N N N N N 15.462 -9.644 3.512 0.737 1.707 -3.864 HOP1 P1T 22
P1T HOP3 HOP3 H 0 0 N N N N N N 14.794 -10.179 6.794 -1.823 0.032 -3.883 HOP3 P1T 23
P1T H5A1 1H5A H 0 0 N N N N N N 15.417 -12.252 3.508 -1.194 0.210 -0.514 H5A1 P1T 24
P1T H5A2 2H5A H 0 0 N N N N N N 13.736 -12.175 2.711 0.303 1.155 -0.486 H5A2 P1T 25
P1T H6 H6 H 0 1 N N N N N N 15.811 -14.186 5.017 -1.553 -1.635 1.099 H6 P1T 26
P1T H2A1 1H2A H 0 0 N N N N N N 14.231 -18.645 2.631 1.747 -1.596 5.298 H2A1 P1T 27
P1T H2A2 2H2A H 0 0 N N N N N N 15.129 -18.666 4.187 0.051 -2.133 5.364 H2A2 P1T 28
P1T H2A3 3H2A H 0 0 N N N N N N 13.333 -18.647 4.187 1.272 -3.188 4.657 H2A3 P1T 29
P1T HO3A HO3A H 0 0 N N N N N N 11.687 -16.976 2.612 2.557 -0.025 4.492 HO3A P1T 30
P1T H4A1 1H4A H 0 0 N N N N N N 12.737 -12.988 1.715 3.379 0.687 1.368 H4A1 P1T 31
P1T H4A2 2H4A H 0 0 N N N N N N 11.361 -14.139 2.289 2.340 0.843 -0.050 H4A2 P1T 32
P1T HN HN H 0 1 N N N N N N 11.851 -15.414 0.802 1.151 2.669 1.163 HN P1T 33
P1T HB1 1HB H 0 1 N N N N N N 11.054 -12.413 0.739 1.524 4.245 3.100 HB1 P1T 34
P1T HB2 2HB H 0 1 N N N N N N 10.302 -12.319 -1.028 3.299 4.637 3.428 HB2 P1T 35
P1T HO HO H 0 1 N N N N N N 11.857 -16.068 -2.621 6.032 2.999 2.874 HO P1T 36
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P1T OP1 P SING N N 1
P1T OP1 HOP1 SING N N 2
P1T P OP2 DOUB N N 3
P1T P OP4 SING N N 4
P1T P OP3 SING N N 5
P1T OP3 HOP3 SING N N 6
P1T OP4 C5A SING N N 7
P1T C5A C5 SING N N 8
P1T C5A H5A1 SING N N 9
P1T C5A H5A2 SING N N 10
P1T C5 C4 SING Y N 11
P1T C5 C6 DOUB Y N 12
P1T C6 N1 SING Y N 13
P1T C6 H6 SING N N 14
P1T N1 C2 DOUB Y N 15
P1T C2 C3 SING Y N 16
P1T C2 C2A SING N N 17
P1T C2A H2A1 SING N N 18
P1T C2A H2A2 SING N N 19
P1T C2A H2A3 SING N N 20
P1T C3 O3A SING N N 21
P1T C3 C4 DOUB Y N 22
P1T O3A HO3A SING N N 23
P1T C4 C4A SING N N 24
P1T C4A N SING N N 25
P1T C4A H4A1 SING N N 26
P1T C4A H4A2 SING N N 27
P1T N CA SING N N 28
P1T N HN SING N N 29
P1T CA C SING N N 30
P1T CA CB DOUB N N 31
P1T CB HB1 SING N N 32
P1T CB HB2 SING N N 33
P1T C OXT DOUB N N 34
P1T C O SING N N 35
P1T O HO SING N N 36
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P1T SMILES ACDLabs 10.04 "O=P(O)(O)OCc1cnc(c(O)c1CNC(=C)/C(=O)O)C"
P1T SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNC(=C)C(O)=O)c1O"
P1T SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(CNC(=C)C(O)=O)c1O"
P1T SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(=C)C(=O)O)O"
P1T SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)CNC(=C)C(=O)O)O"
P1T InChI InChI 1.03 "InChI=1S/C11H15N2O7P/c1-6-10(14)9(4-13-7(2)11(15)16)8(3-12-6)5-20-21(17,18)19/h3,13-14H,2,4-5H2,1H3,(H,15,16)(H2,17,18,19)"
P1T InChIKey InChI 1.03 BXUDKFHCAMQSRX-UHFFFAOYSA-N
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P1T "SYSTEMATIC NAME" ACDLabs 10.04 "2-[({3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methyl)amino]prop-2-enoic acid"
P1T "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "2-[[3-hydroxy-2-methyl-5-(phosphonooxymethyl)pyridin-4-yl]methylamino]prop-2-enoic acid"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P1T "Create component" 2006-09-05 RCSB
P1T "Modify descriptor" 2011-06-04 RCSB
P1T "Modify PCM" 2024-09-27 PDBE
#
_pdbx_chem_comp_pcm.pcm_id 1
_pdbx_chem_comp_pcm.comp_id P1T
_pdbx_chem_comp_pcm.modified_residue_id LYS
_pdbx_chem_comp_pcm.type None
_pdbx_chem_comp_pcm.category "Covalent chemical modification"
_pdbx_chem_comp_pcm.position "Amino-acid side chain"
_pdbx_chem_comp_pcm.polypeptide_position "Any position"
_pdbx_chem_comp_pcm.comp_id_linking_atom C4A
_pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ
_pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ?
_pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ?
#