data_P25 # _chem_comp.id P25 _chem_comp.name "PENTYL TRIHYDROGEN DIPHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H14 O7 P2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2004-07-01 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 248.108 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P25 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1T9B _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P25 C4 C4 C 0 1 N N N 0.008 52.527 121.321 5.735 0.272 0.445 C4 P25 1 P25 CM4 CM4 C 0 1 N N N -1.428 52.286 120.741 6.896 0.125 -0.539 CM4 P25 2 P25 C5 C5 C 0 1 N N N 0.795 53.799 120.965 4.413 0.022 -0.284 C5 P25 3 P25 C6 C6 C 0 1 N N N 2.202 54.169 121.454 3.251 0.169 0.701 C6 P25 4 P25 C7 C7 C 0 1 N N N 3.059 55.281 120.984 1.930 -0.082 -0.029 C7 P25 5 P25 O7 O7 O 0 1 N N N 4.176 56.164 120.862 0.845 0.056 0.891 O7 P25 6 P25 PA PA P 0 1 N N R 5.026 56.133 119.679 -0.507 -0.219 0.061 PA P25 7 P25 O1A O1A O 0 1 N N N 6.026 57.105 119.836 -0.561 0.688 -1.108 O1A P25 8 P25 O2A O2A O 0 1 N N N 5.707 54.900 119.507 -0.524 -1.748 -0.446 O2A P25 9 P25 O3A O3A O 0 1 N N N 4.179 56.495 118.408 -1.782 0.047 1.007 O3A P25 10 P25 PB PB P 0 1 N N N 3.239 57.694 118.002 -3.065 0.149 0.040 PB P25 11 P25 O1B O1B O 0 1 N N N 1.926 57.324 118.382 -3.021 -0.944 -0.956 O1B P25 12 P25 O2B O2B O 0 1 N N N 3.482 57.821 116.580 -4.409 0.021 0.918 O2B P25 13 P25 O3B O3B O 0 1 N N N 3.847 58.846 118.775 -3.054 1.569 -0.720 O3B P25 14 P25 H41 1H4 H 0 1 N N N 0.639 51.644 121.066 5.848 -0.453 1.251 H41 P25 15 P25 H42 2H4 H 0 1 N N N -0.048 52.452 122.432 5.735 1.280 0.861 H42 P25 16 P25 HM41 1HM4 H 0 0 N N N -1.372 52.361 119.630 7.838 0.303 -0.020 HM41 P25 17 P25 HM42 2HM4 H 0 0 N N N -1.999 51.364 120.999 6.896 -0.883 -0.955 HM42 P25 18 P25 HM43 3HM4 H 0 0 N N N -2.059 53.169 120.996 6.783 0.850 -1.345 HM43 P25 19 P25 H51 1H5 H 0 1 N N N 0.136 54.658 121.233 4.300 0.747 -1.090 H51 P25 20 P25 H52 2H5 H 0 1 N N N 0.831 53.842 119.851 4.412 -0.986 -0.699 H52 P25 21 P25 H61 1H6 H 0 1 N N N 2.816 53.244 121.344 3.364 -0.557 1.507 H61 P25 22 P25 H62 2H6 H 0 1 N N N 2.117 54.296 122.559 3.252 1.176 1.116 H62 P25 23 P25 H71 1H7 H 0 1 N N N 2.305 56.083 121.163 1.817 0.644 -0.835 H71 P25 24 P25 H72 2H7 H 0 1 N N N 3.028 54.995 119.907 1.929 -1.089 -0.444 H72 P25 25 P25 H2A H2A H 0 1 N N N 6.261 54.880 118.736 -0.488 -2.304 0.344 H2A P25 26 P25 H2B H2B H 0 1 N N N 2.916 58.543 116.335 -5.152 0.087 0.302 H2B P25 27 P25 H3B H3B H 0 1 N N N 3.281 59.568 118.530 -3.084 2.252 -0.036 H3B P25 28 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P25 C4 CM4 SING N N 1 P25 C4 C5 SING N N 2 P25 C4 H41 SING N N 3 P25 C4 H42 SING N N 4 P25 CM4 HM41 SING N N 5 P25 CM4 HM42 SING N N 6 P25 CM4 HM43 SING N N 7 P25 C5 C6 SING N N 8 P25 C5 H51 SING N N 9 P25 C5 H52 SING N N 10 P25 C6 C7 SING N N 11 P25 C6 H61 SING N N 12 P25 C6 H62 SING N N 13 P25 C7 O7 SING N N 14 P25 C7 H71 SING N N 15 P25 C7 H72 SING N N 16 P25 O7 PA SING N N 17 P25 PA O1A DOUB N N 18 P25 PA O2A SING N N 19 P25 PA O3A SING N N 20 P25 O2A H2A SING N N 21 P25 O3A PB SING N N 22 P25 PB O1B DOUB N N 23 P25 PB O2B SING N N 24 P25 PB O3B SING N N 25 P25 O2B H2B SING N N 26 P25 O3B H3B SING N N 27 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P25 SMILES ACDLabs 10.04 "O=P(OP(=O)(OCCCCC)O)(O)O" P25 SMILES_CANONICAL CACTVS 3.341 "CCCCCO[P@](O)(=O)O[P](O)(O)=O" P25 SMILES CACTVS 3.341 "CCCCCO[P](O)(=O)O[P](O)(O)=O" P25 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCCO[P@@](=O)(O)OP(=O)(O)O" P25 SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCOP(=O)(O)OP(=O)(O)O" P25 InChI InChI 1.03 "InChI=1S/C5H14O7P2/c1-2-3-4-5-11-14(9,10)12-13(6,7)8/h2-5H2,1H3,(H,9,10)(H2,6,7,8)" P25 InChIKey InChI 1.03 VFFCVKZHJFIUBM-UHFFFAOYSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P25 "SYSTEMATIC NAME" ACDLabs 10.04 "pentyl trihydrogen diphosphate" P25 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "pentyl phosphono hydrogen phosphate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P25 "Create component" 2004-07-01 RCSB P25 "Modify descriptor" 2011-06-04 RCSB #