data_P2D # _chem_comp.id P2D _chem_comp.name pentane-2,4-dione _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H8 O2" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2013-11-27 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 100.116 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P2D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3WL7 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P2D C1 C1 C 0 1 N N N N N N 19.656 30.459 45.661 2.599 -0.682 -0.000 C1 P2D 1 P2D C2 C2 C 0 1 N N N N N N 19.537 28.967 45.330 1.230 -0.051 -0.000 C2 P2D 2 P2D C3 C3 C 0 1 N N N N N N 18.264 28.206 45.684 -0.000 -0.921 -0.000 C3 P2D 3 P2D C4 C4 C 0 1 N N N N N N 18.297 26.769 45.159 -1.230 -0.051 -0.000 C4 P2D 4 P2D C5 C5 C 0 1 N N N N N N 17.376 25.682 45.755 -2.599 -0.682 -0.000 C5 P2D 5 P2D O2 O2 O 0 1 N N N N N N 20.484 28.384 44.784 1.120 1.151 0.000 O2 P2D 6 P2D O4 O4 O 0 1 N N N N N N 19.048 26.469 44.230 -1.120 1.151 0.000 O4 P2D 7 P2D H1 H1 H 0 1 N N N N N N 20.642 30.828 45.342 2.499 -1.767 -0.000 H1 P2D 8 P2D H2 H2 H 0 1 N N N N N N 18.868 31.016 45.133 3.144 -0.367 -0.890 H2 P2D 9 P2D H3 H3 H 0 1 N N N N N N 19.544 30.604 46.746 3.144 -0.367 0.890 H3 P2D 10 P2D H4 H4 H 0 1 N N N N N N 17.403 28.727 45.241 -0.000 -1.551 -0.890 H4 P2D 11 P2D H5 H5 H 0 1 N N N N N N 18.156 28.183 46.778 -0.000 -1.551 0.890 H5 P2D 12 P2D H6 H6 H 0 1 N N N N N N 17.538 24.732 45.224 -2.929 -0.834 1.028 H6 P2D 13 P2D H7 H7 H 0 1 N N N N N N 17.608 25.550 46.822 -3.302 -0.025 -0.514 H7 P2D 14 P2D H8 H8 H 0 1 N N N N N N 16.326 25.990 45.643 -2.557 -1.642 -0.514 H8 P2D 15 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P2D O4 C4 DOUB N N 1 P2D O2 C2 DOUB N N 2 P2D C4 C3 SING N N 3 P2D C4 C5 SING N N 4 P2D C2 C1 SING N N 5 P2D C2 C3 SING N N 6 P2D C1 H1 SING N N 7 P2D C1 H2 SING N N 8 P2D C1 H3 SING N N 9 P2D C3 H4 SING N N 10 P2D C3 H5 SING N N 11 P2D C5 H6 SING N N 12 P2D C5 H7 SING N N 13 P2D C5 H8 SING N N 14 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P2D SMILES ACDLabs 12.01 "O=C(C)CC(=O)C" P2D InChI InChI 1.03 "InChI=1S/C5H8O2/c1-4(6)3-5(2)7/h3H2,1-2H3" P2D InChIKey InChI 1.03 YRKCREAYFQTBPV-UHFFFAOYSA-N P2D SMILES_CANONICAL CACTVS 3.385 "CC(=O)CC(C)=O" P2D SMILES CACTVS 3.385 "CC(=O)CC(C)=O" P2D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(=O)CC(=O)C" P2D SMILES "OpenEye OEToolkits" 1.7.6 "CC(=O)CC(=O)C" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P2D "SYSTEMATIC NAME" ACDLabs 12.01 pentane-2,4-dione P2D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 pentane-2,4-dione # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P2D "Create component" 2013-11-27 PDBJ P2D "Initial release" 2014-09-24 RCSB P2D "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id P2D _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category Lipid/lipid-like _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C2 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #