data_P2E # _chem_comp.id P2E _chem_comp.name "(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C20 H32 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "Prostaglandin E2" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2009-06-04 _chem_comp.pdbx_modified_date 2021-03-01 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.465 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P2E _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 3HLQ _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P2E C2 C2 C 0 1 N N N -13.702 11.238 41.955 3.931 3.042 0.032 C2 P2E 1 P2E C3 C3 C 0 1 N N N -13.187 11.873 40.635 4.468 1.653 -0.323 C3 P2E 2 P2E C4 C4 C 0 1 N N N -11.865 11.326 40.065 3.312 0.762 -0.782 C4 P2E 3 P2E C5 C5 C 0 1 N N N -11.673 12.109 38.779 3.841 -0.606 -1.131 C5 P2E 4 P2E C6 C6 C 0 1 N N N -11.648 11.658 37.521 3.299 -1.673 -0.599 C6 P2E 5 P2E C7 C7 C 0 1 N N N -11.716 10.206 37.130 2.044 -1.549 0.227 C7 P2E 6 P2E C8 C8 C 0 1 N N R -13.018 9.743 36.477 0.978 -2.500 -0.320 C8 P2E 7 P2E C9 C9 C 0 1 N N N -14.261 9.840 37.304 1.410 -3.937 -0.111 C9 P2E 8 P2E O3 O3 O 0 1 N N N -14.311 9.534 38.464 2.397 -4.461 -0.569 O3 P2E 9 P2E C12 C12 C 0 1 N N R -13.396 10.604 35.293 -0.343 -2.313 0.455 C12 P2E 10 P2E C11 C11 C 0 1 N N R -14.934 10.431 35.164 -0.909 -3.752 0.570 C11 P2E 11 P2E O4 O4 O 0 1 N N N -15.594 11.482 34.443 -1.783 -3.865 1.695 O4 P2E 12 P2E C10 C10 C 0 1 N N N -15.473 10.382 36.576 0.372 -4.596 0.780 C10 P2E 13 P2E C13 C13 C 0 1 N N N -12.742 10.113 34.024 -1.290 -1.432 -0.317 C13 P2E 14 P2E C14 C14 C 0 1 N N N -12.110 11.028 33.291 -1.713 -0.308 0.206 C14 P2E 15 P2E C15 C15 C 0 1 N N S -11.503 10.637 31.965 -2.660 0.574 -0.566 C15 P2E 16 P2E O5 O5 O 0 1 N N N -12.311 11.374 31.018 -3.037 -0.080 -1.779 O5 P2E 17 P2E C16 C16 C 0 1 N N N -10.024 11.044 31.862 -3.908 0.844 0.277 C16 P2E 18 P2E C17 C17 C 0 1 N N N -9.720 12.508 32.144 -4.812 1.838 -0.454 C17 P2E 19 P2E C18 C18 C 0 1 N N N -8.489 13.013 31.383 -6.060 2.109 0.389 C18 P2E 20 P2E C19 C19 C 0 1 N N N -7.169 12.736 32.118 -6.964 3.103 -0.342 C19 P2E 21 P2E C20 C20 C 0 1 N N N -6.035 13.390 31.335 -8.212 3.373 0.501 C20 P2E 22 P2E O1 O1 O 0 1 N N N -13.627 8.903 42.217 6.194 3.480 0.519 O1 P2E 23 P2E C1 C1 C 0 1 N N N -14.297 9.852 41.785 5.069 3.919 0.484 C1 P2E 24 P2E O2 O2 O 0 1 N N N -15.413 9.683 41.245 4.834 5.190 0.848 O2 P2E 25 P2E H2 H2 H 0 1 N N N -12.851 11.159 42.648 3.458 3.483 -0.845 H2 P2E 26 P2E H2A H2A H 0 1 N N N -14.507 11.888 42.330 3.199 2.954 0.834 H2A P2E 27 P2E H3 H3 H 0 1 N N N -13.961 11.703 39.872 5.200 1.741 -1.125 H3 P2E 28 P2E H3A H3A H 0 1 N N N -12.984 12.926 40.880 4.941 1.212 0.554 H3A P2E 29 P2E H4 H4 H 0 1 N N N -11.030 11.488 40.762 2.580 0.674 0.020 H4 P2E 30 P2E H4A H4A H 0 1 N N N -11.894 10.239 39.898 2.839 1.203 -1.659 H4A P2E 31 P2E H5 H5 H 0 1 N N N -11.538 13.174 38.896 4.666 -0.706 -1.821 H5 P2E 32 P2E H6 H6 H 0 1 N N N -11.574 12.388 36.728 3.751 -2.642 -0.752 H6 P2E 33 P2E H7 H7 H 0 1 N N N -10.906 10.023 36.409 2.264 -1.806 1.263 H7 P2E 34 P2E H7A H7A H 0 1 N N N -11.636 9.640 38.070 1.676 -0.524 0.177 H7A P2E 35 P2E H8 H8 H 0 1 N N N -12.762 8.696 36.257 0.818 -2.310 -1.381 H8 P2E 36 P2E H12 H12 H 0 1 N N N -13.078 11.647 35.439 -0.151 -1.897 1.444 H12 P2E 37 P2E H11 H11 H 0 1 N N N -15.130 9.517 34.584 -1.422 -4.041 -0.347 H11 P2E 38 P2E HO4 HO4 H 0 1 N N N -15.740 12.221 35.022 -2.163 -4.747 1.810 HO4 P2E 39 P2E H10 H10 H 0 1 N N N -16.354 9.730 36.672 0.204 -5.627 0.469 H10 P2E 40 P2E H10A H10A H 0 0 N N N -15.846 11.344 36.958 0.687 -4.558 1.823 H10A P2E 41 P2E H13 H13 H 0 1 N N N -12.784 9.076 33.727 -1.620 -1.726 -1.303 H13 P2E 42 P2E H14 H14 H 0 1 N N N -12.032 12.046 33.644 -1.383 -0.013 1.192 H14 P2E 43 P2E H15 H15 H 0 1 N N N -11.505 9.549 31.800 -2.168 1.518 -0.800 H15 P2E 44 P2E HO5 HO5 H 0 1 N N N -13.169 11.536 31.392 -3.481 -0.928 -1.647 HO5 P2E 45 P2E H16 H16 H 0 1 N N N -9.465 10.444 32.596 -4.448 -0.089 0.436 H16 P2E 46 P2E H16A H16A H 0 0 N N N -9.734 10.871 30.815 -3.612 1.262 1.240 H16A P2E 47 P2E H17 H17 H 0 1 N N N -10.589 13.109 31.837 -4.272 2.772 -0.613 H17 P2E 48 P2E H17A H17A H 0 0 N N N -9.511 12.605 33.220 -5.107 1.421 -1.417 H17A P2E 49 P2E H18 H18 H 0 1 N N N -8.454 12.505 30.408 -6.600 1.175 0.548 H18 P2E 50 P2E H18A H18A H 0 0 N N N -8.588 14.104 31.283 -5.764 2.526 1.352 H18A P2E 51 P2E H19 H19 H 0 1 N N N -7.212 13.157 33.134 -6.424 4.036 -0.501 H19 P2E 52 P2E H19A H19A H 0 0 N N N -6.999 11.652 32.193 -7.259 2.685 -1.305 H19A P2E 53 P2E H20 H20 H 0 1 N N N -6.351 13.547 30.293 -8.752 2.439 0.660 H20 P2E 54 P2E H20A H20A H 0 0 N N N -5.785 14.359 31.792 -7.917 3.790 1.464 H20A P2E 55 P2E H20B H20B H 0 0 N N N -5.151 12.736 31.355 -8.856 4.081 -0.020 H20B P2E 56 P2E HO2 HO2 H 0 1 N N N -15.623 8.757 41.235 5.595 5.714 1.131 HO2 P2E 57 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P2E C2 C3 SING N N 1 P2E C2 C1 SING N N 2 P2E C3 C4 SING N N 3 P2E C4 C5 SING N N 4 P2E C5 C6 DOUB N N 5 P2E C6 C7 SING N N 6 P2E C7 C8 SING N N 7 P2E C8 C9 SING N N 8 P2E C8 C12 SING N N 9 P2E C9 O3 DOUB N N 10 P2E C9 C10 SING N Z 11 P2E C12 C11 SING N N 12 P2E C12 C13 SING N N 13 P2E C11 O4 SING N N 14 P2E C11 C10 SING N N 15 P2E C13 C14 DOUB N N 16 P2E C14 C15 SING N N 17 P2E C15 O5 SING N N 18 P2E C15 C16 SING N N 19 P2E C16 C17 SING N N 20 P2E C17 C18 SING N N 21 P2E C18 C19 SING N N 22 P2E C19 C20 SING N N 23 P2E O1 C1 DOUB N N 24 P2E C1 O2 SING N N 25 P2E C2 H2 SING N N 26 P2E C2 H2A SING N N 27 P2E C3 H3 SING N N 28 P2E C3 H3A SING N N 29 P2E C4 H4 SING N N 30 P2E C4 H4A SING N N 31 P2E C5 H5 SING N E 32 P2E C6 H6 SING N N 33 P2E C7 H7 SING N N 34 P2E C7 H7A SING N N 35 P2E C8 H8 SING N N 36 P2E C12 H12 SING N N 37 P2E C11 H11 SING N N 38 P2E O4 HO4 SING N N 39 P2E C10 H10 SING N N 40 P2E C10 H10A SING N N 41 P2E C13 H13 SING N N 42 P2E C14 H14 SING N N 43 P2E C15 H15 SING N N 44 P2E O5 HO5 SING N N 45 P2E C16 H16 SING N N 46 P2E C16 H16A SING N N 47 P2E C17 H17 SING N N 48 P2E C17 H17A SING N N 49 P2E C18 H18 SING N N 50 P2E C18 H18A SING N N 51 P2E C19 H19 SING N N 52 P2E C19 H19A SING N N 53 P2E C20 H20 SING N N 54 P2E C20 H20A SING N N 55 P2E C20 H20B SING N N 56 P2E O2 HO2 SING N N 57 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P2E SMILES ACDLabs 10.04 "O=C1CC(O)C(/C=C/C(O)CCCCC)C1C\C=C/CCCC(=O)O" P2E SMILES_CANONICAL CACTVS 3.341 "CCCCC[C@H](O)/C=C/[C@H]1[C@H](O)CC(=O)[C@@H]1C\C=C/CCCC(O)=O" P2E SMILES CACTVS 3.341 "CCCCC[CH](O)C=C[CH]1[CH](O)CC(=O)[CH]1CC=CCCCC(O)=O" P2E SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "CCCCC[C@@H](\C=C\[C@H]1[C@@H](CC(=O)[C@@H]1C\C=C/CCCC(=O)O)O)O" P2E SMILES "OpenEye OEToolkits" 1.5.0 "CCCCCC(C=CC1C(CC(=O)C1CC=CCCCC(=O)O)O)O" P2E InChI InChI 1.03 "InChI=1S/C20H32O5/c1-2-3-6-9-15(21)12-13-17-16(18(22)14-19(17)23)10-7-4-5-8-11-20(24)25/h4,7,12-13,15-17,19,21,23H,2-3,5-6,8-11,14H2,1H3,(H,24,25)/b7-4-,13-12+/t15-,16+,17+,19+/m0/s1" P2E InChIKey InChI 1.03 XEYBRNLFEZDVAW-ARSRFYASSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P2E "SYSTEMATIC NAME" ACDLabs 10.04 "(5Z,11alpha,12alpha,13E,15S)-11,15-dihydroxy-9-oxoprosta-5,13-dien-1-oic acid" P2E "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(Z)-7-[(1R,2R,3R)-3-hydroxy-2-[(E,3S)-3-hydroxyoct-1-enyl]-5-oxo-cyclopentyl]hept-5-enoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P2E "Create component" 2009-06-04 PDBJ P2E "Modify descriptor" 2011-06-04 RCSB P2E "Initial release" 2014-07-23 RCSB P2E "Modify synonyms" 2021-03-01 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id P2E _pdbx_chem_comp_synonyms.name "Prostaglandin E2" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##