data_P2J # _chem_comp.id P2J _chem_comp.name "9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C19 H31 N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-07-25 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 437.493 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P2J _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6PVB _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P2J C4 C1 C 0 1 Y N N -24.176 19.381 -10.973 -6.114 1.156 0.307 C4 P2J 1 P2J C6 C2 C 0 1 Y N N -25.422 20.605 -9.443 -5.698 -0.733 1.567 C6 P2J 2 P2J C8 C3 C 0 1 Y N N -23.683 19.520 -6.511 -2.252 -0.978 0.714 C8 P2J 3 P2J C10 C4 C 0 1 N N S -21.874 17.943 -7.183 -1.780 0.951 -0.842 C10 P2J 4 P2J C12 C5 C 0 1 N N S -20.847 15.958 -6.581 0.393 1.202 -1.602 C12 P2J 5 P2J N3 N1 N 0 1 Y N N -23.442 18.894 -9.988 -4.871 1.228 -0.119 N3 P2J 6 P2J C13 C6 C 0 1 N N R -20.263 16.291 -7.680 -0.462 0.952 -2.859 C13 P2J 7 P2J C14 C7 C 0 1 N N R -21.243 17.242 -8.390 -1.811 0.435 -2.304 C14 P2J 8 P2J C15 C8 C 0 1 N N N -21.269 14.475 -6.681 1.672 0.364 -1.664 C15 P2J 9 P2J C1 C9 C 0 1 Y N N -24.653 20.103 -8.381 -4.360 -0.698 1.140 C1 P2J 10 P2J C18 C10 C 0 1 N N N -19.681 13.491 -4.923 3.582 -0.357 -0.363 C18 P2J 11 P2J C19 C11 C 0 1 N N N -19.284 11.989 -5.066 3.047 -1.720 0.080 C19 P2J 12 P2J C2 C12 C 0 1 Y N N -23.633 19.213 -8.683 -3.969 0.332 0.268 C2 P2J 13 P2J C20 C13 C 0 1 N N S -19.334 11.528 -6.547 4.200 -2.725 0.144 C20 P2J 14 P2J C24 C14 C 0 1 N N N -22.065 14.047 -4.288 2.962 1.983 -0.408 C24 P2J 15 P2J C25 C15 C 0 1 N N N -22.993 12.766 -3.962 3.431 2.310 1.011 C25 P2J 16 P2J C26 C16 C 0 1 N N N -23.664 12.863 -2.481 3.814 3.789 1.093 C26 P2J 17 P2J C27 C17 C 0 1 N N N -25.263 12.583 -2.500 4.283 4.117 2.512 C27 P2J 18 P2J C28 C18 C 0 1 N N N -25.617 11.239 -1.670 4.667 5.596 2.593 C28 P2J 19 P2J C75 C19 C 0 1 N N N -18.108 10.699 -6.887 3.697 -4.033 0.697 C75 P2J 20 P2J N16 N2 N 0 1 N N N -21.097 13.662 -5.402 2.471 0.599 -0.454 N16 P2J 21 P2J N17 N3 N 0 1 N N N -26.515 21.547 -9.164 -6.142 -1.724 2.425 N17 P2J 22 P2J N21 N4 N 0 1 N N N -20.534 10.756 -6.785 4.738 -2.938 -1.207 N21 P2J 23 P2J N5 N5 N 0 1 Y N N -25.159 20.230 -10.695 -6.528 0.207 1.126 N5 P2J 24 P2J N7 N6 N 0 1 Y N N -24.656 20.260 -7.040 -3.266 -1.462 1.372 N7 P2J 25 P2J N9 N7 N 0 1 Y N N -23.052 18.866 -7.481 -2.635 0.129 0.017 N9 P2J 26 P2J O11 O1 O 0 1 N N N -22.155 16.935 -6.438 -0.393 0.809 -0.465 O11 P2J 27 P2J O22 O2 O 0 1 N N N -18.965 17.014 -7.403 -0.653 2.168 -3.584 O22 P2J 28 P2J O23 O3 O 0 1 N N N -22.184 16.527 -9.067 -1.864 -0.993 -2.339 O23 P2J 29 P2J O76 O4 O 0 1 N N N -17.834 9.666 -6.218 3.536 -4.185 2.021 O76 P2J 30 P2J O77 O5 O 0 1 N N N -17.365 11.048 -7.846 3.437 -4.945 -0.052 O77 P2J 31 P2J H1 H1 H 0 1 N N N -23.978 19.091 -11.995 -6.821 1.903 -0.023 H1 P2J 32 P2J H2 H2 H 0 1 N N N -23.444 19.461 -5.459 -1.255 -1.393 0.719 H2 P2J 33 P2J H3 H3 H 0 1 N N N -21.089 18.558 -6.719 -2.085 1.997 -0.798 H3 P2J 34 P2J H4 H4 H 0 1 N N N -20.215 16.098 -5.691 0.647 2.259 -1.530 H4 P2J 35 P2J H5 H5 H 0 1 N N N -20.066 15.429 -8.335 0.004 0.199 -3.495 H5 P2J 36 P2J H6 H6 H 0 1 N N N -20.700 17.961 -9.020 -2.649 0.868 -2.851 H6 P2J 37 P2J H7 H7 H 0 1 N N N -22.331 14.442 -6.965 1.411 -0.693 -1.728 H7 P2J 38 P2J H8 H8 H 0 1 N N N -20.664 14.002 -7.469 2.251 0.649 -2.543 H8 P2J 39 P2J H9 H9 H 0 1 N N N -19.007 14.112 -5.531 4.311 0.001 0.364 H9 P2J 40 P2J H10 H10 H 0 1 N N N -19.608 13.795 -3.868 4.060 -0.454 -1.338 H10 P2J 41 P2J H11 H11 H 0 1 N N N -19.983 11.377 -4.477 2.591 -1.629 1.066 H11 P2J 42 P2J H12 H12 H 0 1 N N N -18.262 11.851 -4.683 2.302 -2.068 -0.634 H12 P2J 43 P2J H13 H13 H 0 1 N N N -19.340 12.424 -7.185 4.986 -2.335 0.790 H13 P2J 44 P2J H14 H14 H 0 1 N N N -21.502 14.337 -3.389 2.158 2.663 -0.691 H14 P2J 45 P2J H15 H15 H 0 1 N N N -22.693 14.889 -4.615 3.795 2.096 -1.101 H15 P2J 46 P2J H16 H16 H 0 1 N N N -23.795 12.708 -4.713 2.625 2.105 1.717 H16 P2J 47 P2J H17 H17 H 0 1 N N N -22.375 11.857 -4.014 4.296 1.696 1.259 H17 P2J 48 P2J H18 H18 H 0 1 N N N -23.184 12.120 -1.827 4.619 3.995 0.387 H18 P2J 49 P2J H19 H19 H 0 1 N N N -23.488 13.872 -2.080 2.948 4.404 0.845 H19 P2J 50 P2J H20 H20 H 0 1 N N N -25.785 13.437 -2.044 3.478 3.911 3.217 H20 P2J 51 P2J H21 H21 H 0 1 N N N -25.596 12.463 -3.541 5.149 3.503 2.759 H21 P2J 52 P2J H22 H22 H 0 1 N N N -26.703 11.067 -1.695 5.001 5.830 3.604 H22 P2J 53 P2J H23 H23 H 0 1 N N N -25.100 10.381 -2.124 5.472 5.802 1.888 H23 P2J 54 P2J H24 H24 H 0 1 N N N -25.288 11.355 -0.627 3.801 6.210 2.345 H24 P2J 55 P2J H26 H26 H 0 1 N N N -26.958 21.807 -10.022 -5.527 -2.405 2.740 H26 P2J 56 P2J H27 H27 H 0 1 N N N -27.184 21.112 -8.562 -7.068 -1.737 2.713 H27 P2J 57 P2J H28 H28 H 0 1 N N N -21.336 11.308 -6.559 5.541 -3.548 -1.183 H28 P2J 58 P2J H29 H29 H 0 1 N N N -20.573 10.490 -7.748 4.027 -3.300 -1.826 H29 P2J 59 P2J H31 H31 H 0 1 N N N -18.361 16.426 -6.965 -1.185 2.069 -4.386 H31 P2J 60 P2J H32 H32 H 0 1 N N N -22.783 17.123 -9.501 -1.796 -1.367 -3.228 H32 P2J 61 P2J H33 H33 H 0 1 N N N -17.043 9.267 -6.561 3.211 -5.042 2.328 H33 P2J 62 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P2J C4 N5 DOUB Y N 1 P2J C4 N3 SING Y N 2 P2J N5 C6 SING Y N 3 P2J N3 C2 DOUB Y N 4 P2J C6 N17 SING N N 5 P2J C6 C1 DOUB Y N 6 P2J O23 C14 SING N N 7 P2J C2 C1 SING Y N 8 P2J C2 N9 SING Y N 9 P2J C14 C13 SING N N 10 P2J C14 C10 SING N N 11 P2J C1 N7 SING Y N 12 P2J O77 C75 DOUB N N 13 P2J C13 O22 SING N N 14 P2J C13 C12 SING N N 15 P2J N9 C10 SING N N 16 P2J N9 C8 SING Y N 17 P2J C10 O11 SING N N 18 P2J N7 C8 DOUB Y N 19 P2J C75 C20 SING N N 20 P2J C75 O76 SING N N 21 P2J N21 C20 SING N N 22 P2J C15 C12 SING N N 23 P2J C15 N16 SING N N 24 P2J C12 O11 SING N N 25 P2J C20 C19 SING N N 26 P2J N16 C18 SING N N 27 P2J N16 C24 SING N N 28 P2J C19 C18 SING N N 29 P2J C24 C25 SING N N 30 P2J C25 C26 SING N N 31 P2J C27 C26 SING N N 32 P2J C27 C28 SING N N 33 P2J C4 H1 SING N N 34 P2J C8 H2 SING N N 35 P2J C10 H3 SING N N 36 P2J C12 H4 SING N N 37 P2J C13 H5 SING N N 38 P2J C14 H6 SING N N 39 P2J C15 H7 SING N N 40 P2J C15 H8 SING N N 41 P2J C18 H9 SING N N 42 P2J C18 H10 SING N N 43 P2J C19 H11 SING N N 44 P2J C19 H12 SING N N 45 P2J C20 H13 SING N N 46 P2J C24 H14 SING N N 47 P2J C24 H15 SING N N 48 P2J C25 H16 SING N N 49 P2J C25 H17 SING N N 50 P2J C26 H18 SING N N 51 P2J C26 H19 SING N N 52 P2J C27 H20 SING N N 53 P2J C27 H21 SING N N 54 P2J C28 H22 SING N N 55 P2J C28 H23 SING N N 56 P2J C28 H24 SING N N 57 P2J N17 H26 SING N N 58 P2J N17 H27 SING N N 59 P2J N21 H28 SING N N 60 P2J N21 H29 SING N N 61 P2J O22 H31 SING N N 62 P2J O23 H32 SING N N 63 P2J O76 H33 SING N N 64 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P2J SMILES ACDLabs 12.01 "c2nc(N)c3ncn(C1OC(C(O)C1O)CN(CCC(C(O)=O)N)CCCCC)c3n2" P2J InChI InChI 1.03 "InChI=1S/C19H31N7O5/c1-2-3-4-6-25(7-5-11(20)19(29)30)8-12-14(27)15(28)18(31-12)26-10-24-13-16(21)22-9-23-17(13)26/h9-12,14-15,18,27-28H,2-8,20H2,1H3,(H,29,30)(H2,21,22,23)/t11-,12-,14-,15+,18-/m0/s1" P2J InChIKey InChI 1.03 IZQBBTVZUZUZGN-VQYVRKMMSA-N P2J SMILES_CANONICAL CACTVS 3.385 "CCCCCN(CC[C@H](N)C(O)=O)C[C@@H]1O[C@@H]([C@H](O)[C@H]1O)n2cnc3c(N)ncnc23" P2J SMILES CACTVS 3.385 "CCCCCN(CC[CH](N)C(O)=O)C[CH]1O[CH]([CH](O)[CH]1O)n2cnc3c(N)ncnc23" P2J SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CCCCCN(CC[C@@H](C(=O)O)N)C[C@H]1[C@@H]([C@H]([C@H](O1)n2cnc3c2ncnc3N)O)O" P2J SMILES "OpenEye OEToolkits" 2.0.7 "CCCCCN(CCC(C(=O)O)N)CC1C(C(C(O1)n2cnc3c2ncnc3N)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P2J "SYSTEMATIC NAME" ACDLabs 12.01 "9-(5-{[(3S)-3-amino-3-carboxypropyl](pentyl)amino}-5-deoxy-beta-L-arabinofuranosyl)-9H-purin-6-amine" P2J "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S})-4-[[(2~{S},3~{R},4~{R},5~{S})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methyl-pentyl-amino]-2-azanyl-butanoic acid" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P2J "Create component" 2019-07-25 RCSB P2J "Initial release" 2020-08-19 RCSB ##