data_P2P # _chem_comp.id P2P _chem_comp.name "N7-(5'-PHOSPHO-ALPHA-RIBOSYL)-2-HYDROXYPURINE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H13 N4 O8 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PHOSPHORIC ACID MONO-[3,4-DIHYDROXY-5-(5-HYDROXY-BENZOIMIDAZOL-1-YL)TETRAHYDRO-FURAN-2-YLMETHYL] ESTER" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2001-07-10 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 348.206 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P2P _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1JHR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P2P P P P 0 1 N N N 59.254 39.341 6.091 -0.668 -0.108 -4.849 P P2P 1 P2P O1P O1P O 0 1 N N N 59.092 38.085 5.307 0.242 -1.186 -5.293 O1P P2P 2 P2P O2P O2P O 0 1 N N N 59.541 40.484 5.170 -2.140 -0.369 -5.448 O2P P2P 3 P2P O3P O3P O 0 1 N N N 60.392 39.194 7.036 -0.118 1.310 -5.377 O3P P2P 4 P2P "O6'" O6* O 0 1 N N N 57.926 39.607 6.947 -0.738 -0.091 -3.241 "O6'" P2P 5 P2P "C5'" C5* C 0 1 N N N 57.413 38.584 7.841 0.591 0.142 -2.772 "C5'" P2P 6 P2P "C4'" C4* C 0 1 N N R 57.861 38.909 9.251 0.595 0.170 -1.243 "C4'" P2P 7 P2P "O5'" O5* O 0 1 N N N 57.436 40.272 9.592 0.157 -1.103 -0.715 "O5'" P2P 8 P2P "C3'" C3* C 0 1 N N S 57.301 38.030 10.350 2.032 0.344 -0.705 "C3'" P2P 9 P2P "O3'" O3* O 0 1 N N N 58.107 38.008 11.545 2.278 1.711 -0.367 "O3'" P2P 10 P2P "C2'" C2* C 0 1 N N R 55.976 38.758 10.582 2.073 -0.541 0.559 "C2'" P2P 11 P2P "O2'" O2* O 0 1 N N N 55.480 38.363 11.875 2.349 0.250 1.717 "O2'" P2P 12 P2P "C1'" C1* C 0 1 N N S 56.326 40.246 10.534 0.654 -1.147 0.639 "C1'" P2P 13 P2P C8 C8 C 0 1 Y N N 55.833 40.759 13.012 -1.099 0.585 1.139 C8 P2P 14 P2P N9 N9 N 0 1 Y N N 56.324 41.450 14.078 -1.677 1.109 2.183 N9 P2P 15 P2P C4 C4 C 0 1 Y N N 57.483 42.051 13.625 -1.182 0.554 3.305 C4 P2P 16 P2P C5 C5 C 0 1 Y N N 57.645 41.647 12.304 -0.223 -0.394 2.901 C5 P2P 17 P2P N7 N7 N 0 1 Y N N 56.591 40.854 11.895 -0.194 -0.342 1.522 N7 P2P 18 P2P N3 N3 N 0 1 Y N N 58.300 42.859 14.335 -1.413 0.716 4.609 N3 P2P 19 P2P C2 C2 C 0 1 Y N N 59.368 43.244 13.597 -0.748 0.001 5.498 C2 P2P 20 P2P N1 N1 N 0 1 Y N N 59.639 42.906 12.285 0.163 -0.893 5.147 N1 P2P 21 P2P C6 C6 C 0 1 Y N N 58.790 42.089 11.602 0.452 -1.115 3.873 C6 P2P 22 P2P O11 O11 O 0 1 N N N 60.263 44.077 14.211 -1.006 0.190 6.815 O11 P2P 23 P2P HOP2 2HOP H 0 0 N N N 59.644 41.285 5.670 -2.054 -0.371 -6.411 HOP2 P2P 24 P2P HOP3 3HOP H 0 0 N N N 60.495 39.995 7.536 -0.739 1.983 -5.067 HOP3 P2P 25 P2P "H5'1" 1H5* H 0 0 N N N 56.307 38.460 7.760 0.947 1.099 -3.154 "H5'1" P2P 26 P2P "H5'2" 2H5* H 0 0 N N N 57.704 37.555 7.525 1.245 -0.654 -3.123 "H5'2" P2P 27 P2P "H4'" H4* H 0 1 N N N 58.964 38.754 9.219 -0.045 0.973 -0.877 "H4'" P2P 28 P2P "H3'" H3* H 0 1 N N N 57.236 36.948 10.085 2.759 -0.003 -1.438 "H3'" P2P 29 P2P "HO3'" *HO3 H 0 0 N N N 57.755 37.456 12.234 3.176 1.753 -0.010 "HO3'" P2P 30 P2P "H2'" H2* H 0 1 N N N 55.186 38.523 9.830 2.819 -1.329 0.450 "H2'" P2P 31 P2P "HO2'" *HO2 H 0 0 N N N 54.657 38.815 12.019 3.219 0.648 1.582 "HO2'" P2P 32 P2P "H1'" H1* H 0 1 N N N 55.488 40.900 10.198 0.700 -2.176 0.994 "H1'" P2P 33 P2P H8 H8 H 0 1 N N N 54.900 40.171 13.050 -1.312 0.854 0.115 H8 P2P 34 P2P H6 H6 H 0 1 N N N 59.012 41.806 10.559 1.197 -1.847 3.598 H6 P2P 35 P2P HO11 HO11 H 0 0 N N N 61.012 44.347 13.693 -1.714 -0.424 7.051 HO11 P2P 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P2P P O1P DOUB N N 1 P2P P O2P SING N N 2 P2P P O3P SING N N 3 P2P P "O6'" SING N N 4 P2P O2P HOP2 SING N N 5 P2P O3P HOP3 SING N N 6 P2P "O6'" "C5'" SING N N 7 P2P "C5'" "C4'" SING N N 8 P2P "C5'" "H5'1" SING N N 9 P2P "C5'" "H5'2" SING N N 10 P2P "C4'" "O5'" SING N N 11 P2P "C4'" "C3'" SING N N 12 P2P "C4'" "H4'" SING N N 13 P2P "O5'" "C1'" SING N N 14 P2P "C3'" "O3'" SING N N 15 P2P "C3'" "C2'" SING N N 16 P2P "C3'" "H3'" SING N N 17 P2P "O3'" "HO3'" SING N N 18 P2P "C2'" "O2'" SING N N 19 P2P "C2'" "C1'" SING N N 20 P2P "C2'" "H2'" SING N N 21 P2P "O2'" "HO2'" SING N N 22 P2P "C1'" N7 SING N N 23 P2P "C1'" "H1'" SING N N 24 P2P C8 N9 DOUB Y N 25 P2P C8 N7 SING Y N 26 P2P C8 H8 SING N N 27 P2P N9 C4 SING Y N 28 P2P C4 C5 DOUB Y N 29 P2P C4 N3 SING Y N 30 P2P C5 N7 SING Y N 31 P2P C5 C6 SING Y N 32 P2P N3 C2 DOUB Y N 33 P2P C2 N1 SING Y N 34 P2P C2 O11 SING N N 35 P2P N1 C6 DOUB Y N 36 P2P C6 H6 SING N N 37 P2P O11 HO11 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P2P SMILES ACDLabs 10.04 "O=P(O)(O)OCC3OC(n2cnc1nc(O)ncc12)C(O)C3O" P2P SMILES_CANONICAL CACTVS 3.341 "O[C@H]1[C@@H](O)[C@H](O[C@@H]1CO[P](O)(O)=O)n2cnc3nc(O)ncc23" P2P SMILES CACTVS 3.341 "O[CH]1[CH](O)[CH](O[CH]1CO[P](O)(O)=O)n2cnc3nc(O)ncc23" P2P SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn2[C@@H]3[C@@H]([C@@H]([C@H](O3)COP(=O)(O)O)O)O)nc(n1)O" P2P SMILES "OpenEye OEToolkits" 1.5.0 "c1c2c(ncn2C3C(C(C(O3)COP(=O)(O)O)O)O)nc(n1)O" P2P InChI InChI 1.03 "InChI=1S/C10H13N4O8P/c15-6-5(2-21-23(18,19)20)22-9(7(6)16)14-3-12-8-4(14)1-11-10(17)13-8/h1,3,5-7,9,15-16H,2H2,(H,11,13,17)(H2,18,19,20)/t5-,6-,7-,9+/m1/s1" P2P InChIKey InChI 1.03 BVZASCINAVSQNO-PULFBKJNSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P2P "SYSTEMATIC NAME" ACDLabs 10.04 "7-(5-O-phosphono-alpha-D-ribofuranosyl)-7H-purin-2-ol" P2P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[(2R,3S,4R,5S)-3,4-dihydroxy-5-(2-hydroxypurin-7-yl)oxolan-2-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P2P "Create component" 2001-07-10 RCSB P2P "Modify descriptor" 2011-06-04 RCSB P2P "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id P2P _pdbx_chem_comp_synonyms.name "PHOSPHORIC ACID MONO-[3,4-DIHYDROXY-5-(5-HYDROXY-BENZOIMIDAZOL-1-YL)TETRAHYDRO-FURAN-2-YLMETHYL] ESTER" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##