data_P3D # _chem_comp.id P3D _chem_comp.name "(4-{(E)-[(5-AMINOPENTYL)IMINO]METHYL}-5-HYDROXY-6-METHYLPYRIDIN-3-YL)METHYL DIHYDROGEN PHOSPHATE" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C13 H22 N3 O5 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "PHOSPHORIC ACID MONO-{4-[(5-AMINO-PENTYLIMINO)-METHYL]-5-HYDROXY-6-METHYL-PYRIDIN-3-YLMETHYL} ESTER" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2007-05-16 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag ? _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 331.305 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P3D _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details "Corina V3.40" _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code ? _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P3D OAE OAE O 0 1 N N N 68.318 76.948 8.705 -4.078 -2.747 1.417 OAE P3D 1 P3D PAV PAV P 0 1 N N N 68.723 75.514 8.143 -4.090 -2.211 -0.101 PAV P3D 2 P3D OAF OAF O 0 1 N N N 67.412 75.052 7.317 -3.350 -3.158 -0.964 OAF P3D 3 P3D OAC OAC O 0 1 N N N 69.084 74.538 9.243 -5.611 -2.093 -0.616 OAC P3D 4 P3D OAQ OAQ O 0 1 N N N 69.967 75.705 7.146 -3.388 -0.764 -0.165 OAQ P3D 5 P3D CAN CAN C 0 1 N N N 70.673 74.519 6.776 -2.004 -0.557 0.128 CAN P3D 6 P3D CAT CAT C 0 1 Y N N 71.899 74.947 5.963 -1.671 0.904 -0.026 CAT P3D 7 P3D CAH CAH C 0 1 Y N N 71.799 74.624 4.614 -2.645 1.808 -0.399 CAH P3D 8 P3D NAP NAP N 0 1 Y N N 72.760 74.910 3.764 -2.366 3.090 -0.537 NAP P3D 9 P3D CAR CAR C 0 1 Y N N 73.887 75.554 4.161 -1.158 3.571 -0.329 CAR P3D 10 P3D CAA CAA C 0 1 N N N 74.943 75.860 3.083 -0.905 5.047 -0.503 CAA P3D 11 P3D CAS CAS C 0 1 Y N N 74.062 75.914 5.526 -0.116 2.737 0.050 CAS P3D 12 P3D OAD OAD O 0 1 N N N 75.203 76.554 5.894 1.127 3.238 0.264 OAD P3D 13 P3D CAU CAU C 0 1 Y N N 73.038 75.619 6.443 -0.371 1.365 0.213 CAU P3D 14 P3D CAG CAG C 0 1 N N N 73.143 75.924 7.816 0.701 0.437 0.620 CAG P3D 15 P3D NAO NAO N 0 1 N N N 73.764 77.001 8.335 1.895 0.883 0.836 NAO P3D 16 P3D CAM CAM C 0 1 N N N 73.756 77.076 9.799 2.960 -0.039 1.240 CAM P3D 17 P3D CAL CAL C 0 1 N N N 74.160 78.431 10.335 4.027 -0.097 0.146 CAL P3D 18 P3D CAK CAK C 0 1 N N N 73.232 78.868 11.496 5.139 -1.060 0.568 CAK P3D 19 P3D CAJ CAJ C 0 1 N N N 72.842 77.735 12.460 6.206 -1.117 -0.527 CAJ P3D 20 P3D CAI CAI C 0 1 N N N 73.233 77.963 13.904 7.318 -2.080 -0.105 CAI P3D 21 P3D NAB NAB N 0 1 N N N 74.354 78.916 14.057 8.342 -2.136 -1.156 NAB P3D 22 P3D HOAE HOAE H 0 0 N N N 68.237 76.907 9.651 -4.546 -2.175 2.040 HOAE P3D 23 P3D HOAC HOAC H 0 0 N N N 69.160 73.664 8.879 -6.097 -2.929 -0.604 HOAC P3D 24 P3D HAN1 1HAN H 0 0 N N N 70.988 73.970 7.676 -1.799 -0.871 1.151 HAN1 P3D 25 P3D HAN2 2HAN H 0 0 N N N 70.028 73.855 6.182 -1.395 -1.143 -0.561 HAN2 P3D 26 P3D HAH HAH H 0 1 N N N 70.910 74.126 4.256 -3.651 1.460 -0.581 HAH P3D 27 P3D HAA1 1HAA H 0 0 N N N 74.454 75.933 2.100 -1.077 5.559 0.443 HAA1 P3D 28 P3D HAA2 2HAA H 0 0 N N N 75.440 76.813 3.317 0.127 5.203 -0.819 HAA2 P3D 29 P3D HAA3 3HAA H 0 0 N N N 75.690 75.052 3.062 -1.581 5.444 -1.260 HAA3 P3D 30 P3D HOAD HOAD H 0 0 N N N 75.744 76.703 5.128 1.286 3.518 1.176 HOAD P3D 31 P3D HAG1 1HAG H 0 0 N N N 72.686 75.235 8.511 0.488 -0.616 0.738 HAG1 P3D 32 P3D HAM1 1HAM H 0 0 N N N 72.735 76.860 10.148 3.410 0.310 2.169 HAM1 P3D 33 P3D HAM2 2HAM H 0 0 N N N 74.493 76.347 10.167 2.541 -1.034 1.392 HAM2 P3D 34 P3D HAL1 1HAL H 0 0 N N N 75.194 78.375 10.706 3.576 -0.447 -0.783 HAL1 P3D 35 P3D HAL2 2HAL H 0 0 N N N 74.078 79.169 9.523 4.446 0.898 -0.006 HAL2 P3D 36 P3D HAK1 1HAK H 0 0 N N N 73.759 79.639 12.077 5.589 -0.710 1.496 HAK1 P3D 37 P3D HAK2 2HAK H 0 0 N N N 72.299 79.228 11.037 4.720 -2.055 0.719 HAK2 P3D 38 P3D HAJ1 1HAJ H 0 0 N N N 71.748 77.627 12.423 5.755 -1.467 -1.456 HAJ1 P3D 39 P3D HAJ2 2HAJ H 0 0 N N N 73.389 76.841 12.127 6.625 -0.123 -0.679 HAJ2 P3D 40 P3D HAI1 1HAI H 0 0 N N N 72.361 78.367 14.438 7.768 -1.731 0.824 HAI1 P3D 41 P3D HAI2 2HAI H 0 0 N N N 73.562 76.997 14.314 6.899 -3.075 0.046 HAI2 P3D 42 P3D HAB1 1HAB H 0 0 N N N 74.734 79.131 13.158 8.701 -1.215 -1.361 HAB1 P3D 43 P3D HAB2 2HAB H 0 0 N N N 74.022 79.755 14.487 9.088 -2.766 -0.901 HAB2 P3D 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P3D OAE PAV SING N N 1 P3D OAE HOAE SING N N 2 P3D PAV OAQ SING N N 3 P3D PAV OAF DOUB N N 4 P3D PAV OAC SING N N 5 P3D OAC HOAC SING N N 6 P3D OAQ CAN SING N N 7 P3D CAN CAT SING N N 8 P3D CAN HAN1 SING N N 9 P3D CAN HAN2 SING N N 10 P3D CAT CAH DOUB Y N 11 P3D CAT CAU SING Y N 12 P3D CAH NAP SING Y N 13 P3D CAH HAH SING N N 14 P3D NAP CAR DOUB Y N 15 P3D CAR CAA SING N N 16 P3D CAR CAS SING Y N 17 P3D CAA HAA1 SING N N 18 P3D CAA HAA2 SING N N 19 P3D CAA HAA3 SING N N 20 P3D CAS OAD SING N N 21 P3D CAS CAU DOUB Y N 22 P3D OAD HOAD SING N N 23 P3D CAU CAG SING N N 24 P3D CAG NAO DOUB N N 25 P3D CAG HAG1 SING N N 26 P3D NAO CAM SING N N 27 P3D CAM CAL SING N N 28 P3D CAM HAM1 SING N N 29 P3D CAM HAM2 SING N N 30 P3D CAL CAK SING N N 31 P3D CAL HAL1 SING N N 32 P3D CAL HAL2 SING N N 33 P3D CAK CAJ SING N N 34 P3D CAK HAK1 SING N N 35 P3D CAK HAK2 SING N N 36 P3D CAJ CAI SING N N 37 P3D CAJ HAJ1 SING N N 38 P3D CAJ HAJ2 SING N N 39 P3D CAI NAB SING N N 40 P3D CAI HAI1 SING N N 41 P3D CAI HAI2 SING N N 42 P3D NAB HAB1 SING N N 43 P3D NAB HAB2 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P3D SMILES ACDLabs 10.04 "O=P(O)(O)OCc1cnc(c(O)c1/C=N/CCCCCN)C" P3D SMILES_CANONICAL CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C=NCCCCCN)c1O" P3D SMILES CACTVS 3.341 "Cc1ncc(CO[P](O)(O)=O)c(C=NCCCCCN)c1O" P3D SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)\C=N\CCCCCN)O" P3D SMILES "OpenEye OEToolkits" 1.5.0 "Cc1c(c(c(cn1)COP(=O)(O)O)C=NCCCCCN)O" P3D InChI InChI 1.03 "InChI=1S/C13H22N3O5P/c1-10-13(17)12(8-15-6-4-2-3-5-14)11(7-16-10)9-21-22(18,19)20/h7-8,17H,2-6,9,14H2,1H3,(H2,18,19,20)/b15-8+" P3D InChIKey InChI 1.03 NPYALNYUWCUSTP-OVCLIPMQSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P3D "SYSTEMATIC NAME" ACDLabs 10.04 "(4-{(E)-[(5-aminopentyl)imino]methyl}-5-hydroxy-6-methylpyridin-3-yl)methyl dihydrogen phosphate" P3D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "[4-[(E)-5-aminopentyliminomethyl]-5-hydroxy-6-methyl-pyridin-3-yl]methyl dihydrogen phosphate" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P3D "Create component" 2007-05-16 RCSB P3D "Modify descriptor" 2011-06-04 RCSB P3D "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id P3D _pdbx_chem_comp_synonyms.name "PHOSPHORIC ACID MONO-{4-[(5-AMINO-PENTYLIMINO)-METHYL]-5-HYDROXY-6-METHYL-PYRIDIN-3-YLMETHYL} ESTER" _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##