data_P5M # _chem_comp.id P5M _chem_comp.name "2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H13 O7" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms Petunidin _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2014-10-15 _chem_comp.pdbx_modified_date 2020-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 317.270 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P5M _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 4REN _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBJ # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P5M O30 O30 O 0 1 N N N 6.239 -2.628 18.466 4.786 -1.934 -0.423 O30 P5M 1 P5M C2 C2 C 0 1 Y N N 5.825 -3.465 17.475 4.161 -0.754 -0.177 C2 P5M 2 P5M C3 C3 C 0 1 Y N N 4.488 -3.308 16.844 2.758 -0.701 -0.094 C3 P5M 3 P5M C9 C9 C 0 1 Y N N 3.605 -2.309 17.228 1.965 -1.857 -0.261 C9 P5M 4 P5M C10 C10 C 0 1 Y N N 2.368 -2.210 16.598 0.605 -1.663 -0.154 C10 P5M 5 P5M O27 O27 O 0 1 N N N 1.519 -1.221 16.994 -0.264 -2.699 -0.295 O27 P5M 6 P5M C1 C1 C 0 1 Y N N 6.651 -4.492 17.033 4.892 0.388 -0.003 C1 P5M 7 P5M C6 C6 C 0 1 Y N N 6.249 -5.362 16.020 4.256 1.605 0.250 C6 P5M 8 P5M O29 O29 O 0 1 N N N 7.095 -6.353 15.624 5.003 2.727 0.419 O29 P5M 9 P5M C5 C5 C 0 1 Y N N 5.006 -5.248 15.401 2.883 1.685 0.330 C5 P5M 10 P5M C4 C4 C 0 1 Y N N 4.109 -4.258 15.772 2.104 0.530 0.163 C4 P5M 11 P5M O12 O12 O 1 1 Y N N 2.894 -4.160 15.157 0.889 0.585 0.231 O12 P5M 12 P5M C11 C11 C 0 1 Y N N 2.004 -3.181 15.519 0.144 -0.359 0.105 C11 P5M 13 P5M C14 C14 C 0 1 Y N N 0.707 -3.162 14.780 -1.313 -0.131 0.215 C14 P5M 14 P5M C15 C15 C 0 1 Y N N 0.442 -4.266 13.977 -1.944 -0.225 1.456 C15 P5M 15 P5M C16 C16 C 0 1 Y N N -0.727 -4.369 13.236 -3.306 -0.006 1.557 C16 P5M 16 P5M O22 O22 O 0 1 N N N -0.955 -5.468 12.465 -3.921 -0.097 2.767 O22 P5M 17 P5M C19 C19 C 0 1 Y N N -0.201 -2.104 14.860 -2.059 0.184 -0.923 C19 P5M 18 P5M C18 C18 C 0 1 Y N N -1.403 -2.116 14.155 -3.421 0.397 -0.818 C18 P5M 19 P5M O21 O21 O 0 1 N N N -2.283 -1.069 14.250 -4.148 0.703 -1.926 O21 P5M 20 P5M C23 C23 C 0 1 N N N -2.826 -0.715 15.521 -3.439 0.789 -3.164 C23 P5M 21 P5M C17 C17 C 0 1 Y N N -1.721 -3.277 13.294 -4.047 0.309 0.422 C17 P5M 22 P5M O24 O24 O 0 1 N N N -2.878 -3.346 12.577 -5.386 0.524 0.524 O24 P5M 23 P5M H1 H1 H 0 1 N N N 7.112 -2.876 18.747 4.922 -2.119 -1.363 H1 P5M 24 P5M H2 H2 H 0 1 N N N 3.875 -1.614 18.009 2.395 -2.827 -0.459 H2 P5M 25 P5M H3 H3 H 0 1 N N N 1.926 -0.711 17.685 -0.470 -3.155 0.532 H3 P5M 26 P5M H4 H4 H 0 1 N N N 7.624 -4.619 17.484 5.969 0.349 -0.062 H4 P5M 27 P5M H5 H5 H 0 1 N N N 7.897 -6.307 16.131 5.177 3.210 -0.399 H5 P5M 28 P5M H6 H6 H 0 1 N N N 4.737 -5.943 14.619 2.407 2.635 0.527 H6 P5M 29 P5M H7 H7 H 0 1 N N N 1.166 -5.066 13.929 -1.369 -0.469 2.337 H7 P5M 30 P5M H8 H8 H 0 1 N N N -0.222 -6.067 12.542 -4.248 -0.983 2.976 H8 P5M 31 P5M H9 H9 H 0 1 N N N 0.034 -1.255 15.484 -1.572 0.262 -1.883 H9 P5M 32 P5M H10 H10 H 0 1 N N N -3.507 0.141 15.404 -2.675 1.562 -3.092 H10 P5M 33 P5M H11 H11 H 0 1 N N N -3.381 -1.571 15.934 -2.967 -0.170 -3.379 H11 P5M 34 P5M H12 H12 H 0 1 N N N -2.009 -0.443 16.206 -4.135 1.039 -3.964 H12 P5M 35 P5M H13 H13 H 0 1 N N N -3.395 -2.564 12.733 -5.625 1.445 0.694 H13 P5M 36 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P5M O22 C16 SING N N 1 P5M O24 C17 SING N N 2 P5M C16 C17 DOUB Y N 3 P5M C16 C15 SING Y N 4 P5M C17 C18 SING Y N 5 P5M C15 C14 DOUB Y N 6 P5M C18 O21 SING N N 7 P5M C18 C19 DOUB Y N 8 P5M O21 C23 SING N N 9 P5M C14 C19 SING Y N 10 P5M C14 C11 SING N N 11 P5M O12 C11 DOUB Y N 12 P5M O12 C4 SING Y N 13 P5M C5 C4 DOUB Y N 14 P5M C5 C6 SING Y N 15 P5M C11 C10 SING Y N 16 P5M O29 C6 SING N N 17 P5M C4 C3 SING Y N 18 P5M C6 C1 DOUB Y N 19 P5M C10 O27 SING N N 20 P5M C10 C9 DOUB Y N 21 P5M C3 C9 SING Y N 22 P5M C3 C2 DOUB Y N 23 P5M C1 C2 SING Y N 24 P5M C2 O30 SING N N 25 P5M O30 H1 SING N N 26 P5M C9 H2 SING N N 27 P5M O27 H3 SING N N 28 P5M C1 H4 SING N N 29 P5M O29 H5 SING N N 30 P5M C5 H6 SING N N 31 P5M C15 H7 SING N N 32 P5M O22 H8 SING N N 33 P5M C19 H9 SING N N 34 P5M C23 H10 SING N N 35 P5M C23 H11 SING N N 36 P5M C23 H12 SING N N 37 P5M O24 H13 SING N N 38 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P5M SMILES ACDLabs 12.01 "Oc1cc(cc(OC)c1O)c3[o+]c2cc(O)cc(O)c2cc3O" P5M InChI InChI 1.03 "InChI=1S/C16H12O7/c1-22-14-3-7(2-11(19)15(14)21)16-12(20)6-9-10(18)4-8(17)5-13(9)23-16/h2-6H,1H3,(H4-,17,18,19,20,21)/p+1" P5M InChIKey InChI 1.03 AFOLOMGWVXKIQL-UHFFFAOYSA-O P5M SMILES_CANONICAL CACTVS 3.385 "COc1cc(cc(O)c1O)c2[o+]c3cc(O)cc(O)c3cc2O" P5M SMILES CACTVS 3.385 "COc1cc(cc(O)c1O)c2[o+]c3cc(O)cc(O)c3cc2O" P5M SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1O)O)c2c(cc3c(cc(cc3[o+]2)O)O)O" P5M SMILES "OpenEye OEToolkits" 1.7.6 "COc1cc(cc(c1O)O)c2c(cc3c(cc(cc3[o+]2)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P5M "SYSTEMATIC NAME" ACDLabs 12.01 "2-(3,4-dihydroxy-5-methoxyphenyl)-3,5,7-trihydroxychromenium" P5M "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6 "2-[3-methoxy-4,5-bis(oxidanyl)phenyl]chromenylium-3,5,7-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P5M "Create component" 2014-10-15 PDBJ P5M "Initial release" 2015-01-21 RCSB P5M "Modify synonyms" 2020-06-05 PDBE # _pdbx_chem_comp_synonyms.ordinal 1 _pdbx_chem_comp_synonyms.comp_id P5M _pdbx_chem_comp_synonyms.name Petunidin _pdbx_chem_comp_synonyms.provenance ? _pdbx_chem_comp_synonyms.type ? ##