data_P5N # _chem_comp.id P5N _chem_comp.name "1-(4-methylphenyl)imidazole" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C10 H8 N2 O" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-04-15 _chem_comp.pdbx_modified_date 2024-09-27 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 172.183 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P5N _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6YP2 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE _chem_comp.pdbx_pcm Y # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_backbone_atom_flag _chem_comp_atom.pdbx_n_terminal_atom_flag _chem_comp_atom.pdbx_c_terminal_atom_flag _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P5N C10 C1 C 0 1 Y N N N N N -15.146 -19.951 -0.067 -2.537 1.174 0.001 C10 P5N 1 P5N N12 N1 N 0 1 Y N N N N N -14.561 -21.608 -1.361 -3.881 -0.540 -0.001 N12 P5N 2 P5N C13 C2 C 0 1 Y N N N N N -15.492 -22.042 -0.493 -2.667 -1.018 0.006 C13 P5N 3 P5N C01 C3 C 0 1 N N N N N N -19.821 -21.157 4.398 3.836 -0.329 0.002 C01 P5N 4 P5N C03 C4 C 0 1 Y N N N N N -18.750 -21.136 3.315 2.369 -0.237 0.001 C03 P5N 5 P5N C04 C5 C 0 1 Y N N N N N -17.786 -22.135 3.255 1.744 1.015 -0.001 C04 P5N 6 P5N C05 C6 C 0 1 Y N N N N N -16.816 -22.103 2.266 0.370 1.096 -0.002 C05 P5N 7 P5N C06 C7 C 0 1 Y N N N N N -16.816 -21.062 1.349 -0.397 -0.065 -0.003 C06 P5N 8 P5N C07 C8 C 0 1 Y N N N N N -17.779 -20.065 1.410 0.220 -1.312 -0.001 C07 P5N 9 P5N C08 C9 C 0 1 Y N N N N N -18.748 -20.103 2.393 1.593 -1.403 -0.005 C08 P5N 10 P5N C11 C10 C 0 1 Y N N N N N -14.351 -20.324 -1.110 -3.831 0.801 -0.001 C11 P5N 11 P5N N09 N2 N 0 1 Y N N N N N -15.828 -21.008 0.294 -1.792 0.022 0.001 N09 P5N 12 P5N H1 H1 H 0 1 N N N N N N -15.202 -18.968 0.378 -2.159 2.185 -0.003 H1 P5N 13 P5N H2 H2 H 0 1 N N N N N N -15.896 -23.042 -0.439 -2.402 -2.065 0.008 H2 P5N 14 P5N H3 H3 H 0 1 N N N N N N -20.656 -21.602 4.919 4.316 -1.296 0.003 H3 P5N 15 P5N H6 H6 H 0 1 N N N N N N -17.793 -22.936 3.979 2.339 1.917 0.000 H6 P5N 16 P5N H7 H7 H 0 1 N N N N N N -16.068 -22.880 2.210 -0.113 2.062 -0.003 H7 P5N 17 P5N H8 H8 H 0 1 N N N N N N -17.771 -19.260 0.690 -0.380 -2.210 -0.002 H8 P5N 18 P5N H9 H9 H 0 1 N N N N N N -19.501 -19.330 2.442 2.071 -2.371 -0.004 H9 P5N 19 P5N H10 H10 H 0 1 N N N N N N -13.665 -19.681 -1.642 -4.682 1.466 -0.001 H10 P5N 20 P5N O1 O1 O 0 1 N Y N N N N ? ? ? 4.506 0.682 0.002 O1 P5N 21 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P5N N12 C11 SING Y N 1 P5N N12 C13 DOUB Y N 2 P5N C11 C10 DOUB Y N 3 P5N C13 N09 SING Y N 4 P5N C10 N09 SING Y N 5 P5N N09 C06 SING N N 6 P5N C06 C07 DOUB Y N 7 P5N C06 C05 SING Y N 8 P5N C07 C08 SING Y N 9 P5N C05 C04 DOUB Y N 10 P5N C08 C03 DOUB Y N 11 P5N C04 C03 SING Y N 12 P5N C03 C01 SING N N 13 P5N C10 H1 SING N N 14 P5N C13 H2 SING N N 15 P5N C01 H3 SING N N 16 P5N C04 H6 SING N N 17 P5N C05 H7 SING N N 18 P5N C07 H8 SING N N 19 P5N C08 H9 SING N N 20 P5N C11 H10 SING N N 21 P5N C01 O1 DOUB N N 22 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P5N InChI InChI 1.03 "InChI=1S/C10H8N2O/c13-7-9-1-3-10(4-2-9)12-6-5-11-8-12/h1-8H" P5N InChIKey InChI 1.03 DCICUQFMCRPKHZ-UHFFFAOYSA-N P5N SMILES_CANONICAL CACTVS 3.385 "O=Cc1ccc(cc1)n2ccnc2" P5N SMILES CACTVS 3.385 "O=Cc1ccc(cc1)n2ccnc2" P5N SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=O)n2ccnc2" P5N SMILES "OpenEye OEToolkits" 2.0.7 "c1cc(ccc1C=O)n2ccnc2" # _pdbx_chem_comp_identifier.comp_id P5N _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier 4-imidazol-1-ylbenzaldehyde # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P5N "Create component" 2020-04-15 PDBE P5N "Initial release" 2020-09-23 RCSB P5N "Modify leaving atom flag" 2021-02-23 PDBE P5N "Modify PCM" 2024-09-27 PDBE # _pdbx_chem_comp_pcm.pcm_id 1 _pdbx_chem_comp_pcm.comp_id P5N _pdbx_chem_comp_pcm.modified_residue_id LYS _pdbx_chem_comp_pcm.type None _pdbx_chem_comp_pcm.category "Covalent chemical modification" _pdbx_chem_comp_pcm.position "Amino-acid side chain" _pdbx_chem_comp_pcm.polypeptide_position "Any position" _pdbx_chem_comp_pcm.comp_id_linking_atom C01 _pdbx_chem_comp_pcm.modified_residue_id_linking_atom NZ _pdbx_chem_comp_pcm.uniprot_specific_ptm_accession ? _pdbx_chem_comp_pcm.uniprot_generic_ptm_accession ? #