data_P62 # _chem_comp.id P62 _chem_comp.name "5-[(4-chlorophenyl)methyl]-6-[[2-(dimethylamino)ethylamino]methyl]-4-oxidanyl-1~{H}-pyrimidine-2-thione" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C16 H21 Cl N4 O S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2020-12-02 _chem_comp.pdbx_modified_date 2021-11-05 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 352.882 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P62 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 7B4S _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site PDBE # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P62 N N1 N 0 1 N N N 24.183 13.544 46.753 -0.665 3.409 -0.449 N P62 1 P62 C C1 C 0 1 N N N 25.604 11.947 44.981 0.604 1.070 0.114 C P62 2 P62 O O1 O 0 1 N N N 25.604 13.001 48.415 -1.979 2.373 -2.055 O P62 3 P62 C1 C2 C 0 1 N N N 26.013 11.973 46.303 -0.363 1.098 -0.834 C1 P62 4 P62 C10 C3 C 0 1 Y N N 27.027 10.152 49.092 -3.203 -0.479 -1.269 C10 P62 5 P62 C11 C4 C 0 1 N N N 26.315 11.348 43.874 1.317 -0.218 0.437 C11 P62 6 P62 C12 C5 C 0 1 N N N 26.115 11.588 41.556 3.458 -1.346 0.350 C12 P62 7 P62 C13 C6 C 0 1 N N N 27.483 11.120 41.091 4.922 -1.192 -0.067 C13 P62 8 P62 C14 C7 C 0 1 N N N 26.832 8.907 40.277 5.165 -3.542 -0.597 C14 P62 9 P62 C15 C8 C 0 1 N N N 26.797 10.771 38.759 7.098 -2.245 0.069 C15 P62 10 P62 C2 C9 C 0 1 N N N 25.220 12.860 47.147 -1.010 2.318 -1.113 C2 P62 11 P62 C3 C10 C 0 1 N N N 23.794 13.446 45.462 0.288 3.368 0.481 C3 P62 12 P62 C4 C11 C 0 1 N N N 27.185 11.147 46.778 -0.741 -0.156 -1.580 C4 P62 13 P62 C5 C12 C 0 1 Y N N 26.844 10.013 47.721 -1.914 -0.812 -0.897 C5 P62 14 P62 C6 C13 C 0 1 Y N N 26.268 8.839 47.245 -1.700 -1.745 0.100 C6 P62 15 P62 C7 C14 C 0 1 Y N N 25.829 7.855 48.117 -2.775 -2.346 0.726 C7 P62 16 P62 C8 C15 C 0 1 Y N N 25.981 8.048 49.476 -4.066 -2.014 0.355 C8 P62 17 P62 C9 C16 C 0 1 Y N N 26.598 9.175 49.973 -4.280 -1.080 -0.643 C9 P62 18 P62 N1 N2 N 0 1 N N N 24.492 12.664 44.583 0.926 2.219 0.771 N1 P62 19 P62 N2 N3 N 0 1 N N N 25.741 10.947 42.816 2.730 -0.106 0.049 N2 P62 20 P62 N3 N4 N 0 1 N N N 27.440 10.196 39.943 5.650 -2.432 0.233 N3 P62 21 P62 S S1 S 0 1 N N N 22.404 14.229 44.889 0.709 4.799 1.321 S P62 22 P62 CL CL1 CL 0 0 N N N 25.332 6.870 50.586 -5.417 -2.769 1.141 CL P62 23 P62 H1 H1 H 0 1 N N N 25.026 13.614 48.855 -2.362 3.253 -2.174 H1 P62 24 P62 H7 H2 H 0 1 N N N 27.512 11.037 49.476 -3.370 0.253 -2.045 H7 P62 25 P62 H8 H3 H 0 1 N N N 26.834 10.471 44.287 1.249 -0.412 1.507 H8 P62 26 P62 H19 H4 H 0 1 N N N 27.056 12.094 43.552 0.853 -1.038 -0.112 H19 P62 27 P62 H9 H5 H 0 1 N N N 26.138 12.678 41.700 3.009 -2.174 -0.199 H9 P62 28 P62 H10 H6 H 0 1 N N N 25.369 11.335 40.789 3.404 -1.549 1.419 H10 P62 29 P62 H12 H7 H 0 1 N N N 27.977 10.608 41.930 4.975 -0.990 -1.137 H12 P62 30 P62 H11 H8 H 0 1 N N N 28.072 12.003 40.803 5.371 -0.364 0.482 H11 P62 31 P62 H13 H9 H 0 1 N N N 27.325 8.488 41.167 5.671 -4.462 -0.306 H13 P62 32 P62 H14 H10 H 0 1 N N N 25.761 9.049 40.484 4.090 -3.658 -0.457 H14 P62 33 P62 H15 H11 H 0 1 N N N 26.953 8.214 39.431 5.373 -3.329 -1.646 H15 P62 34 P62 H16 H12 H 0 1 N N N 27.264 11.738 38.521 7.312 -1.954 -0.959 H16 P62 35 P62 H18 H13 H 0 1 N N N 26.918 10.086 37.907 7.442 -1.464 0.747 H18 P62 36 P62 H17 H14 H 0 1 N N N 25.726 10.921 38.960 7.613 -3.178 0.298 H17 P62 37 P62 H3 H15 H 0 1 N N N 27.676 10.716 45.893 -1.012 0.098 -2.604 H3 P62 38 P62 H2 H16 H 0 1 N N N 27.886 11.819 47.295 0.105 -0.843 -1.587 H2 P62 39 P62 H4 H17 H 0 1 N N N 26.161 8.692 46.180 -0.692 -2.004 0.389 H4 P62 40 P62 H5 H18 H 0 1 N N N 25.375 6.951 47.739 -2.608 -3.076 1.505 H5 P62 41 P62 H6 H19 H 0 1 N N N 26.745 9.294 51.036 -5.287 -0.817 -0.930 H6 P62 42 P62 H H20 H 0 1 N N N 24.191 12.610 43.631 1.617 2.209 1.452 H P62 43 P62 H20 H21 H 0 1 N N N 24.758 11.082 42.940 3.166 0.687 0.495 H20 P62 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P62 C15 N3 SING N N 1 P62 N3 C14 SING N N 2 P62 N3 C13 SING N N 3 P62 C13 C12 SING N N 4 P62 C12 N2 SING N N 5 P62 N2 C11 SING N N 6 P62 C11 C SING N N 7 P62 N1 C SING N N 8 P62 N1 C3 SING N N 9 P62 S C3 DOUB N N 10 P62 C C1 DOUB N N 11 P62 C3 N SING N N 12 P62 C1 C4 SING N N 13 P62 C1 C2 SING N N 14 P62 N C2 DOUB N N 15 P62 C4 C5 SING N N 16 P62 C2 O SING N N 17 P62 C6 C5 DOUB Y N 18 P62 C6 C7 SING Y N 19 P62 C5 C10 SING Y N 20 P62 C7 C8 DOUB Y N 21 P62 C10 C9 DOUB Y N 22 P62 C8 C9 SING Y N 23 P62 C8 CL SING N N 24 P62 O H1 SING N N 25 P62 C10 H7 SING N N 26 P62 C11 H8 SING N N 27 P62 C11 H19 SING N N 28 P62 C12 H9 SING N N 29 P62 C12 H10 SING N N 30 P62 C13 H12 SING N N 31 P62 C13 H11 SING N N 32 P62 C14 H13 SING N N 33 P62 C14 H14 SING N N 34 P62 C14 H15 SING N N 35 P62 C15 H16 SING N N 36 P62 C15 H18 SING N N 37 P62 C15 H17 SING N N 38 P62 C4 H3 SING N N 39 P62 C4 H2 SING N N 40 P62 C6 H4 SING N N 41 P62 C7 H5 SING N N 42 P62 C9 H6 SING N N 43 P62 N1 H SING N N 44 P62 N2 H20 SING N N 45 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P62 InChI InChI 1.03 "InChI=1S/C16H21ClN4OS/c1-21(2)8-7-18-10-14-13(15(22)20-16(23)19-14)9-11-3-5-12(17)6-4-11/h3-6,18H,7-10H2,1-2H3,(H2,19,20,22,23)" P62 InChIKey InChI 1.03 BODROOXVZKSZLI-UHFFFAOYSA-N P62 SMILES_CANONICAL CACTVS 3.385 "CN(C)CCNCC1=C(Cc2ccc(Cl)cc2)C(=NC(=S)N1)O" P62 SMILES CACTVS 3.385 "CN(C)CCNCC1=C(Cc2ccc(Cl)cc2)C(=NC(=S)N1)O" P62 SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CN(C)CCNCC1=C(C(=NC(=S)N1)O)Cc2ccc(cc2)Cl" P62 SMILES "OpenEye OEToolkits" 2.0.7 "CN(C)CCNCC1=C(C(=NC(=S)N1)O)Cc2ccc(cc2)Cl" # _pdbx_chem_comp_identifier.comp_id P62 _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "5-[(4-chlorophenyl)methyl]-6-[[2-(dimethylamino)ethylamino]methyl]-4-oxidanyl-1~{H}-pyrimidine-2-thione" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P62 "Create component" 2020-12-02 PDBE P62 "Initial release" 2021-11-10 RCSB ##