data_P7U # _chem_comp.id P7U _chem_comp.name "{(2S)-4-[(7P)-7-(8-chloronaphthalen-1-yl)-8-fluoro-2-{[(4R,7as)-tetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-1-[(3S)-2,2,3-trihydroxybutanoyl]piperazin-2-yl}acetonitrile" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C35 H37 Cl F N7 O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2022-05-25 _chem_comp.pdbx_modified_date 2022-08-26 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 690.164 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P7U _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CX5 _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P7U C10 C1 C 0 1 Y N N 2.909 -23.956 -7.825 4.447 -2.576 -0.891 C10 P7U 1 P7U C14 C2 C 0 1 Y N N 6.342 -22.622 -8.700 1.947 0.186 -0.414 C14 P7U 2 P7U C15 C3 C 0 1 Y N N 7.150 -23.342 -7.899 0.760 -0.592 -0.404 C15 P7U 3 P7U C16 C4 C 0 1 Y N N 6.556 -24.318 -7.012 0.852 -1.979 -0.554 C16 P7U 4 P7U C11 C5 C 0 1 Y N N 4.423 -23.798 -7.685 3.164 -1.857 -0.719 C11 P7U 5 P7U C12 C6 C 0 1 Y N N 4.921 -22.864 -8.627 3.173 -0.477 -0.576 C12 P7U 6 P7U C02 C7 C 0 1 Y N N 2.134 -21.842 -6.751 4.329 -3.438 1.406 C02 P7U 7 P7U C03 C8 C 0 1 Y N N 1.072 -20.977 -6.412 4.879 -4.183 2.407 C03 P7U 8 P7U C04 C9 C 0 1 Y N N -0.228 -21.304 -6.792 6.087 -4.850 2.221 C04 P7U 9 P7U C05 C10 C 0 1 Y N N -0.472 -22.454 -7.487 6.753 -4.777 1.036 C05 P7U 10 P7U C06 C11 C 0 1 Y N N 0.609 -23.345 -7.821 6.216 -4.018 -0.019 C06 P7U 11 P7U C07 C12 C 0 1 Y N N 0.286 -24.525 -8.540 6.876 -3.922 -1.256 C07 P7U 12 P7U C08 C13 C 0 1 Y N N 1.269 -25.406 -8.920 6.338 -3.176 -2.261 C08 P7U 13 P7U C09 C14 C 0 1 Y N N 2.584 -25.103 -8.561 5.133 -2.503 -2.091 C09 P7U 14 P7U C18 C15 C 0 1 Y N N 8.561 -23.098 -8.001 -0.477 0.077 -0.241 C18 P7U 15 P7U C20 C16 C 0 1 N N N 10.877 -24.278 -7.636 -2.424 -0.338 1.002 C20 P7U 16 P7U C21 C17 C 0 1 N N N 11.896 -23.462 -6.851 -3.641 -1.266 1.071 C21 P7U 17 P7U C23 C18 C 0 1 N N N 12.881 -24.241 -4.603 -5.729 -0.887 -0.160 C23 P7U 18 P7U C24 C19 C 0 1 N N N 14.291 -24.653 -5.153 -6.476 -0.892 1.149 C24 P7U 19 P7U C32 C20 C 0 1 N N S 14.952 -23.307 -5.189 -7.975 -0.746 0.881 C32 P7U 20 P7U C33 C21 C 0 1 N N N 15.279 -22.554 -6.534 -8.739 -0.816 2.205 C33 P7U 21 P7U C35 C22 C 0 1 N N S 10.453 -23.275 -4.892 -3.680 -1.266 -1.453 C35 P7U 22 P7U C36 C23 C 0 1 N N N 10.124 -21.759 -4.972 -4.599 -0.870 -2.611 C36 P7U 23 P7U C37 C24 C 0 1 N N N 8.724 -21.268 -4.431 -5.628 -1.906 -2.797 C37 P7U 24 P7U C39 C25 C 0 1 N N N 9.374 -24.049 -5.670 -2.461 -0.339 -1.423 C39 P7U 25 P7U C41 C26 C 0 1 Y N N 8.212 -21.506 -9.655 0.674 2.084 -0.120 C41 P7U 26 P7U C43 C27 C 0 1 N N N 10.029 -20.750 -11.009 1.862 4.135 0.001 C43 P7U 27 P7U C44 C28 C 0 1 N N N 10.218 -19.950 -12.354 1.601 5.633 0.176 C44 P7U 28 P7U C46 C29 C 0 1 N N N 8.546 -20.009 -13.979 2.803 7.383 -0.940 C46 P7U 29 P7U C47 C30 C 0 1 N N N 9.002 -18.591 -13.676 1.765 6.807 -1.935 C47 P7U 30 P7U C48 C31 C 0 1 N N N 9.640 -18.761 -12.298 0.726 6.174 -0.972 C48 P7U 31 P7U C49 C32 C 0 1 N N N 10.801 -21.572 -14.138 3.011 7.093 1.452 C49 P7U 32 P7U C50 C33 C 0 1 N N N 12.204 -21.057 -13.294 1.549 7.240 1.990 C50 P7U 33 P7U C51 C34 C 0 1 N N N 11.817 -19.808 -12.635 0.898 5.913 1.520 C51 P7U 34 P7U C53 C35 C 0 1 Y N N 1.896 -23.032 -7.474 4.988 -3.340 0.171 C53 P7U 35 P7U F13 F1 F 0 1 N N N 4.167 -22.066 -9.459 4.335 0.213 -0.594 F13 P7U 36 P7U N17 N1 N 0 1 Y N N 5.246 -24.522 -6.956 2.024 -2.551 -0.701 N17 P7U 37 P7U N19 N2 N 0 1 N N N 9.521 -23.800 -7.158 -1.663 -0.623 -0.222 N19 P7U 38 P7U N22 N3 N 0 1 N N N 11.741 -23.631 -5.453 -4.403 -1.130 -0.180 N22 P7U 39 P7U N38 N4 N 0 1 N N N 7.683 -20.835 -4.020 -6.422 -2.705 -2.941 N38 P7U 40 P7U N40 N5 N 0 1 Y N N 9.040 -22.200 -8.863 -0.462 1.397 -0.105 N40 P7U 41 P7U N45 N6 N 0 1 N N N 9.599 -20.733 -13.576 2.869 6.393 0.157 N45 P7U 42 P7U N52 N7 N 0 1 Y N N 6.866 -21.697 -9.569 1.854 1.512 -0.264 N52 P7U 43 P7U O25 O1 O 0 1 N N N 14.291 -25.330 -6.365 -6.231 -2.122 1.833 O25 P7U 44 P7U O34 O2 O 0 1 N N N 12.695 -24.347 -3.428 -6.320 -0.664 -1.195 O34 P7U 45 P7U O42 O3 O 0 1 N N N 8.697 -20.531 -10.593 0.620 3.429 0.023 O42 P7U 46 P7U CL01 CL1 CL 0 0 N N N 3.726 -21.358 -6.119 2.822 -2.614 1.659 CL01 P7U 47 P7U O1 O4 O 0 1 N Y N 14.911 -25.465 -4.103 -6.028 0.199 1.957 O1 P7U 48 P7U O2 O5 O 0 1 N Y N 15.855 -23.271 -4.054 -8.410 -1.803 0.023 O2 P7U 49 P7U H1 H1 H 0 1 N N N 7.202 -24.902 -6.372 -0.045 -2.582 -0.548 H1 P7U 50 P7U H2 H2 H 0 1 N N N 1.265 -20.068 -5.862 4.371 -4.257 3.357 H2 P7U 51 P7U H3 H3 H 0 1 N N N -1.045 -20.646 -6.536 6.503 -5.433 3.029 H3 P7U 52 P7U H4 H4 H 0 1 N N N -1.481 -22.696 -7.788 7.689 -5.299 0.906 H4 P7U 53 P7U H5 H5 H 0 1 N N N -0.744 -24.733 -8.791 7.814 -4.436 -1.408 H5 P7U 54 P7U H6 H6 H 0 1 N N N 1.033 -26.301 -9.477 6.855 -3.109 -3.207 H6 P7U 55 P7U H7 H7 H 0 1 N N N 3.376 -25.774 -8.860 4.729 -1.919 -2.904 H7 P7U 56 P7U H8 H8 H 0 1 N N N 10.990 -24.098 -8.715 -2.757 0.700 0.990 H8 P7U 57 P7U H9 H9 H 0 1 N N N 11.002 -25.351 -7.428 -1.789 -0.506 1.872 H9 P7U 58 P7U H10 H10 H 0 1 N N N 12.908 -23.784 -7.139 -3.309 -2.297 1.188 H10 P7U 59 P7U H11 H11 H 0 1 N N N 11.766 -22.398 -7.098 -4.270 -0.983 1.915 H11 P7U 60 P7U H12 H12 H 0 1 N N N 14.132 -22.676 -4.816 -8.167 0.213 0.401 H12 P7U 61 P7U H13 H13 H 0 1 N N N 15.760 -21.591 -6.308 -8.407 -0.010 2.859 H13 P7U 62 P7U H14 H14 H 0 1 N N N 15.958 -23.169 -7.143 -9.807 -0.713 2.014 H14 P7U 63 P7U H15 H15 H 0 1 N N N 14.347 -22.376 -7.091 -8.547 -1.776 2.685 H15 P7U 64 P7U H16 H16 H 0 1 N N N 10.411 -23.583 -3.837 -3.352 -2.298 -1.583 H16 P7U 65 P7U H17 H17 H 0 1 N N N 10.899 -21.227 -4.401 -5.078 0.082 -2.385 H17 P7U 66 P7U H18 H18 H 0 1 N N N 10.184 -21.468 -6.031 -4.011 -0.773 -3.524 H18 P7U 67 P7U H19 H19 H 0 1 N N N 9.483 -25.125 -5.469 -1.853 -0.507 -2.312 H19 P7U 68 P7U H20 H20 H 0 1 N N N 8.379 -23.714 -5.342 -2.794 0.699 -1.401 H20 P7U 69 P7U H21 H21 H 0 1 N N N 10.202 -21.823 -11.178 2.362 3.962 -0.952 H21 P7U 70 P7U H22 H22 H 0 1 N N N 10.730 -20.381 -10.246 2.496 3.780 0.813 H22 P7U 71 P7U H23 H23 H 0 1 N N N 7.641 -20.268 -13.409 3.776 7.481 -1.421 H23 P7U 72 P7U H24 H24 H 0 1 N N N 8.355 -20.146 -15.053 2.468 8.348 -0.559 H24 P7U 73 P7U H25 H25 H 0 1 N N N 9.735 -18.238 -14.417 1.313 7.600 -2.530 H25 P7U 74 P7U H26 H26 H 0 1 N N N 8.151 -17.895 -13.641 2.217 6.049 -2.575 H26 P7U 75 P7U H27 H27 H 0 1 N N N 8.875 -18.736 -11.508 0.190 5.363 -1.464 H27 P7U 76 P7U H28 H28 H 0 1 N N N 10.385 -17.973 -12.113 0.032 6.929 -0.604 H28 P7U 77 P7U H29 H29 H 0 1 N N N 10.628 -22.644 -13.965 3.483 8.065 1.309 H29 P7U 78 P7U H30 H30 H 0 1 N N N 10.919 -21.389 -15.216 3.592 6.488 2.148 H30 P7U 79 P7U H32 H32 H 0 1 N N N 13.034 -20.883 -13.995 1.540 7.340 3.075 H32 P7U 80 P7U H33 H33 H 0 1 N N N 12.505 -21.809 -12.550 1.043 8.082 1.518 H33 P7U 81 P7U H35 H35 H 0 1 N N N 12.018 -18.948 -13.290 -0.174 6.041 1.374 H35 P7U 82 P7U H36 H36 H 0 1 N N N 12.365 -19.685 -11.689 1.098 5.113 2.233 H36 P7U 83 P7U H38 H38 H 0 1 N N N 15.185 -25.535 -6.614 -6.438 -2.910 1.311 H38 P7U 84 P7U H39 H39 H 0 1 N N N 14.370 -25.440 -3.322 -6.163 1.068 1.554 H39 P7U 85 P7U H40 H40 H 0 1 N N N 16.302 -22.433 -4.031 -8.343 -2.683 0.418 H40 P7U 86 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P7U C10 C11 SING N N 1 P7U C10 C09 DOUB Y N 2 P7U C10 C53 SING Y N 3 P7U C14 C15 DOUB Y N 4 P7U C14 C12 SING Y N 5 P7U C14 N52 SING Y N 6 P7U C15 C16 SING Y N 7 P7U C15 C18 SING Y N 8 P7U C16 N17 DOUB Y N 9 P7U C11 C12 DOUB Y N 10 P7U C11 N17 SING Y N 11 P7U C12 F13 SING N N 12 P7U C02 C03 DOUB Y N 13 P7U C02 C53 SING Y N 14 P7U C02 CL01 SING N N 15 P7U C03 C04 SING Y N 16 P7U C04 C05 DOUB Y N 17 P7U C05 C06 SING Y N 18 P7U C06 C07 SING Y N 19 P7U C06 C53 DOUB Y N 20 P7U C07 C08 DOUB Y N 21 P7U C08 C09 SING Y N 22 P7U C18 N19 SING N N 23 P7U C18 N40 DOUB Y N 24 P7U C20 C21 SING N N 25 P7U C20 N19 SING N N 26 P7U C21 N22 SING N N 27 P7U C23 C24 SING N N 28 P7U C23 N22 SING N N 29 P7U C23 O34 DOUB N N 30 P7U C24 C32 SING N N 31 P7U C24 O25 SING N N 32 P7U C32 C33 SING N N 33 P7U C35 C36 SING N N 34 P7U C35 C39 SING N N 35 P7U C35 N22 SING N N 36 P7U C36 C37 SING N N 37 P7U C37 N38 TRIP N N 38 P7U C39 N19 SING N N 39 P7U C41 N40 SING Y N 40 P7U C41 N52 DOUB Y N 41 P7U C41 O42 SING N N 42 P7U C43 C44 SING N N 43 P7U C43 O42 SING N N 44 P7U C44 C48 SING N N 45 P7U C44 C51 SING N N 46 P7U C44 N45 SING N N 47 P7U C46 C47 SING N N 48 P7U C46 N45 SING N N 49 P7U C47 C48 SING N N 50 P7U C49 N45 SING N N 51 P7U C50 C51 SING N N 52 P7U C24 O1 SING N N 53 P7U C32 O2 SING N N 54 P7U C16 H1 SING N N 55 P7U C03 H2 SING N N 56 P7U C04 H3 SING N N 57 P7U C05 H4 SING N N 58 P7U C07 H5 SING N N 59 P7U C08 H6 SING N N 60 P7U C09 H7 SING N N 61 P7U C20 H8 SING N N 62 P7U C20 H9 SING N N 63 P7U C21 H10 SING N N 64 P7U C21 H11 SING N N 65 P7U C32 H12 SING N N 66 P7U C33 H13 SING N N 67 P7U C33 H14 SING N N 68 P7U C33 H15 SING N N 69 P7U C35 H16 SING N N 70 P7U C36 H17 SING N N 71 P7U C36 H18 SING N N 72 P7U C39 H19 SING N N 73 P7U C39 H20 SING N N 74 P7U C43 H21 SING N N 75 P7U C43 H22 SING N N 76 P7U C46 H23 SING N N 77 P7U C46 H24 SING N N 78 P7U C47 H25 SING N N 79 P7U C47 H26 SING N N 80 P7U C48 H27 SING N N 81 P7U C48 H28 SING N N 82 P7U C49 H29 SING N N 83 P7U C49 H30 SING N N 84 P7U C50 H32 SING N N 85 P7U C50 H33 SING N N 86 P7U C51 H35 SING N N 87 P7U C51 H36 SING N N 88 P7U O25 H38 SING N N 89 P7U O1 H39 SING N N 90 P7U O2 H40 SING N N 91 P7U C49 C50 SING N N 92 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P7U SMILES ACDLabs 12.01 "CC(O)C(O)(O)C(=O)N1CCN(CC1CC#N)c1nc(nc2c(F)c(ncc21)c1cccc2cccc(Cl)c21)OCC12CCCN2CCC1" P7U InChI InChI 1.06 "InChI=1S/C35H37ClFN7O5/c1-21(45)35(47,48)32(46)44-17-16-42(19-23(44)10-13-38)31-25-18-39-29(24-8-2-6-22-7-3-9-26(36)27(22)24)28(37)30(25)40-33(41-31)49-20-34-11-4-14-43(34)15-5-12-34/h2-3,6-9,18,21,23,45,47-48H,4-5,10-12,14-17,19-20H2,1H3/t21-,23-/m0/s1" P7U InChIKey InChI 1.06 ODVFPOIDMRCQHU-GMAHTHKFSA-N P7U SMILES_CANONICAL CACTVS 3.385 "C[C@H](O)C(O)(O)C(=O)N1CCN(C[C@@H]1CC#N)c2nc(OCC34CCCN3CCC4)nc5c(F)c(ncc25)c6cccc7cccc(Cl)c67" P7U SMILES CACTVS 3.385 "C[CH](O)C(O)(O)C(=O)N1CCN(C[CH]1CC#N)c2nc(OCC34CCCN3CCC4)nc5c(F)c(ncc25)c6cccc7cccc(Cl)c67" P7U SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "C[C@@H](C(C(=O)N1CCN(C[C@@H]1CC#N)c2c3cnc(c(c3nc(n2)OCC45CCCN4CCC5)F)c6cccc7c6c(ccc7)Cl)(O)O)O" P7U SMILES "OpenEye OEToolkits" 2.0.7 "CC(C(C(=O)N1CCN(CC1CC#N)c2c3cnc(c(c3nc(n2)OCC45CCCN4CCC5)F)c6cccc7c6c(ccc7)Cl)(O)O)O" # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P7U "SYSTEMATIC NAME" ACDLabs 12.01 "{(2S)-4-[(7P)-7-(8-chloronaphthalen-1-yl)-8-fluoro-2-{[(4R,7as)-tetrahydro-1H-pyrrolizin-7a(5H)-yl]methoxy}pyrido[4,3-d]pyrimidin-4-yl]-1-[(3S)-2,2,3-trihydroxybutanoyl]piperazin-2-yl}acetonitrile" P7U "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "2-[(2~{S})-4-[7-(8-chloranylnaphthalen-1-yl)-8-fluoranyl-2-(1,2,3,5,6,7-hexahydropyrrolizin-8-ylmethoxy)pyrido[4,3-d]pyrimidin-4-yl]-1-[(3~{S})-2,2,3-tris(oxidanyl)butanoyl]piperazin-2-yl]ethanenitrile" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P7U "Create component" 2022-05-25 RCSB P7U "Modify formula" 2022-08-15 RCSB P7U "Initial release" 2022-08-31 RCSB #