data_P8L # _chem_comp.id P8L _chem_comp.name "[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C24 H42 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-26 _chem_comp.pdbx_modified_date 2022-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 532.671 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P8L _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CZT _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P8L N1 N1 N 0 1 N N N -21.770 24.601 1.590 0.956 0.544 -0.306 N1 P8L 1 P8L C2 C1 C 0 1 N N S -21.110 25.863 1.880 -0.350 0.545 0.358 C2 P8L 2 P8L C3 C2 C 0 1 N N N -21.318 26.858 0.722 -0.707 1.972 0.779 C3 P8L 3 P8L C4 C3 C 0 1 N N N -20.692 26.316 -0.603 -1.822 1.931 1.826 C4 P8L 4 P8L C6 C4 C 0 1 N N N -19.145 26.323 -0.526 -1.313 1.230 3.086 C6 P8L 5 P8L C8 C5 C 0 1 N N S -21.197 27.564 5.431 -3.697 -0.591 -1.112 C8 P8L 6 P8L C9 C6 C 0 1 N N N -20.579 26.774 6.600 -4.850 -1.228 -0.333 C9 P8L 7 P8L C10 C7 C 0 1 N N S -21.044 25.262 6.554 -4.358 -2.506 0.350 C10 P8L 8 P8L C11 C8 C 0 1 N N N -20.403 24.475 7.656 -5.479 -3.152 1.134 C11 P8L 9 P8L C16 C9 C 0 1 N N S -22.355 19.996 3.140 5.716 0.755 -0.184 C16 P8L 10 P8L C17 C10 C 0 1 N N R -23.241 19.326 2.036 7.069 0.645 0.522 C17 P8L 11 P8L C19 C11 C 0 1 N N N -22.673 18.525 0.855 8.210 -0.032 -0.239 C19 P8L 12 P8L C20 C12 C 0 1 N N N -23.584 18.747 -0.361 7.813 -1.470 -0.579 C20 P8L 13 P8L C21 C13 C 0 1 N N N -23.427 17.677 -1.464 8.955 -2.147 -1.341 C21 P8L 14 P8L C22 C14 C 0 1 N N N -23.635 16.273 -0.895 10.213 -2.157 -0.470 C22 P8L 15 P8L C1 C15 C 0 1 N N N -21.625 23.488 2.546 2.085 0.540 0.429 C1 P8L 16 P8L C12 C16 C 0 1 N N N -22.805 23.936 7.621 -4.433 -4.874 -0.020 C12 P8L 17 P8L C13 C17 C 0 1 N N N -22.533 25.157 6.686 -3.972 -3.568 -0.705 C13 P8L 18 P8L C14 C18 C 0 1 N N R -20.815 29.043 5.523 -4.223 0.599 -1.918 C14 P8L 19 P8L C15 C19 C 0 1 N N N -22.630 21.497 3.428 4.457 0.631 0.678 C15 P8L 20 P8L C18 C20 C 0 1 N N N -23.466 19.073 3.554 6.582 2.001 0.007 C18 P8L 21 P8L C23 C21 C 0 1 N N N -22.556 16.017 0.162 10.609 -0.719 -0.130 C23 P8L 22 P8L C24 C22 C 0 1 N N N -22.602 17.054 1.307 9.468 -0.042 0.632 C24 P8L 23 P8L C5 C23 C 0 1 N N N -21.103 27.227 -1.790 -2.248 3.359 2.173 C5 P8L 24 P8L C7 C24 C 0 1 N N N -21.669 26.424 3.195 -1.398 0.025 -0.593 C7 P8L 25 P8L N2 N2 N 0 1 N N N -20.726 27.022 4.163 -2.670 -0.130 -0.175 N2 P8L 26 P8L N3 N3 N 0 1 N N N -21.454 23.645 8.308 -5.501 -4.476 0.904 N3 P8L 27 P8L O1 O1 O 0 1 N N N -20.965 23.619 3.526 2.023 0.445 1.639 O1 P8L 28 P8L O2 O2 O 0 1 N N N -19.253 24.482 7.955 -6.247 -2.561 1.864 O2 P8L 29 P8L O3 O3 O 0 1 N N N -21.599 29.731 4.573 -3.176 1.116 -2.741 O3 P8L 30 P8L O4 O4 O 0 1 N N N -22.834 26.365 3.435 -1.096 -0.253 -1.734 O4 P8L 31 P8L O5 O5 O 0 1 N N N -22.263 22.251 2.280 3.283 0.642 -0.177 O5 P8L 32 P8L SG S1 S 1 1 N Y N -19.081 29.225 5.067 -4.795 1.893 -0.783 SG P8L 33 P8L O6 O6 O 0 1 N Y N -18.695 30.925 5.529 -5.630 1.431 0.271 O6 P8L 34 P8L H1 H1 H 0 1 N N N -22.312 24.490 0.757 1.007 0.541 -1.275 H1 P8L 35 P8L H2 H2 H 0 1 N N N -20.030 25.694 2.004 -0.310 -0.095 1.239 H2 P8L 36 P8L H3 H3 H 0 1 N N N -20.841 27.815 0.980 0.172 2.456 1.204 H3 P8L 37 P8L H4 H4 H 0 1 N N N -22.396 27.015 0.572 -1.046 2.534 -0.091 H4 P8L 38 P8L H5 H5 H 0 1 N N N -21.048 25.291 -0.784 -2.676 1.385 1.425 H5 P8L 39 P8L H6 H6 H 0 1 N N N -18.816 25.685 0.308 -2.127 1.141 3.806 H6 P8L 40 P8L H7 H7 H 0 1 N N N -18.729 25.938 -1.469 -0.948 0.236 2.827 H7 P8L 41 P8L H8 H8 H 0 1 N N N -18.791 27.351 -0.362 -0.503 1.812 3.524 H8 P8L 42 P8L H9 H9 H 0 1 N N N -22.292 27.477 5.488 -3.267 -1.327 -1.790 H9 P8L 43 P8L H10 H10 H 0 1 N N N -19.482 26.818 6.527 -5.208 -0.528 0.422 H10 P8L 44 P8L H11 H11 H 0 1 N N N -20.901 27.223 7.551 -5.661 -1.471 -1.018 H11 P8L 45 P8L H12 H12 H 0 1 N N N -20.738 24.840 5.585 -3.511 -2.289 1.000 H12 P8L 46 P8L H13 H13 H 0 1 N N N -21.317 19.643 3.235 5.639 0.345 -1.191 H13 P8L 47 P8L H14 H14 H 0 1 N N N -23.981 20.053 1.671 7.062 0.484 1.600 H14 P8L 48 P8L H15 H15 H 0 1 N N N -21.660 18.884 0.623 8.409 0.518 -1.159 H15 P8L 49 P8L H16 H16 H 0 1 N N N -23.348 19.730 -0.796 7.614 -2.019 0.341 H16 P8L 50 P8L H17 H17 H 0 1 N N N -24.629 18.739 -0.017 6.917 -1.462 -1.199 H17 P8L 51 P8L H18 H18 H 0 1 N N N -22.416 17.746 -1.892 8.672 -3.171 -1.583 H18 P8L 52 P8L H19 H19 H 0 1 N N N -24.172 17.860 -2.252 9.154 -1.597 -2.261 H19 P8L 53 P8L H20 H20 H 0 1 N N N -24.631 16.202 -0.434 10.014 -2.707 0.450 H20 P8L 54 P8L H21 H21 H 0 1 N N N -23.550 15.529 -1.701 11.026 -2.640 -1.013 H21 P8L 55 P8L H22 H22 H 0 1 N N N -23.572 24.186 8.369 -4.817 -5.574 -0.762 H22 P8L 56 P8L H23 H23 H 0 1 N N N -23.135 23.066 7.034 -3.607 -5.325 0.530 H23 P8L 57 P8L H24 H24 H 0 1 N N N -22.942 26.076 7.131 -4.512 -3.406 -1.638 H24 P8L 58 P8L H25 H25 H 0 1 N N N -22.992 24.992 5.700 -2.896 -3.576 -0.875 H25 P8L 59 P8L H26 H26 H 0 1 N N N -20.939 29.425 6.547 -5.052 0.274 -2.546 H26 P8L 60 P8L H27 H27 H 0 1 N N N -22.034 21.824 4.293 4.491 -0.303 1.237 H27 P8L 61 P8L H28 H28 H 0 1 N N N -23.699 21.644 3.642 4.408 1.469 1.372 H28 P8L 62 P8L H29 H29 H 0 1 N N N -24.359 19.482 4.049 7.076 2.411 -0.874 H29 P8L 63 P8L H30 H30 H 0 1 N N N -23.226 18.090 3.985 6.256 2.733 0.747 H30 P8L 64 P8L H31 H31 H 0 1 N N N -22.707 15.014 0.587 11.506 -0.727 0.490 H31 P8L 65 P8L H32 H32 H 0 1 N N N -21.569 16.066 -0.321 10.809 -0.170 -1.050 H32 P8L 66 P8L H33 H33 H 0 1 N N N -23.489 16.843 1.922 9.750 0.982 0.874 H33 P8L 67 P8L H34 H34 H 0 1 N N N -21.695 16.928 1.917 9.269 -0.592 1.551 H34 P8L 68 P8L H35 H35 H 0 1 N N N -22.199 27.246 -1.876 -1.394 3.906 2.573 H35 P8L 69 P8L H36 H36 H 0 1 N N N -20.731 28.247 -1.615 -2.611 3.859 1.275 H36 P8L 70 P8L H37 H37 H 0 1 N N N -20.670 26.833 -2.721 -3.043 3.330 2.918 H37 P8L 71 P8L H38 H38 H 0 1 N N N -19.751 27.055 3.945 -2.905 0.064 0.746 H38 P8L 72 P8L H39 H39 H 0 1 N N N -21.309 23.007 9.064 -6.141 -5.089 1.298 H39 P8L 73 P8L H40 H40 H 0 1 N N N -22.518 29.645 4.798 -2.404 1.425 -2.248 H40 P8L 74 P8L O7 O7 O 0 1 N Y N ? ? ? -3.575 2.564 -0.168 O7 P8L 75 P8L O8 O8 O 0 1 N Y N ? ? ? -5.569 2.928 -1.587 O8 P8L 76 P8L H41 H41 H 0 1 N Y N ? ? ? -2.948 2.911 -0.817 H41 P8L 77 P8L H42 H42 H 0 1 N Y N ? ? ? -5.913 3.660 -1.058 H42 P8L 78 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P8L C5 C4 SING N N 1 P8L C21 C22 SING N N 2 P8L C21 C20 SING N N 3 P8L C22 C23 SING N N 4 P8L C4 C6 SING N N 5 P8L C4 C3 SING N N 6 P8L C20 C19 SING N N 7 P8L C23 C24 SING N N 8 P8L C3 C2 SING N N 9 P8L C19 C24 SING N N 10 P8L C19 C17 SING N N 11 P8L N1 C2 SING N N 12 P8L N1 C1 SING N N 13 P8L C2 C7 SING N N 14 P8L C17 C16 SING N N 15 P8L C17 C18 SING N N 16 P8L O5 C1 SING N N 17 P8L O5 C15 SING N N 18 P8L C1 O1 DOUB N N 19 P8L C16 C15 SING N N 20 P8L C16 C18 SING N N 21 P8L C7 O4 DOUB N N 22 P8L C7 N2 SING N N 23 P8L N2 C8 SING N N 24 P8L O3 C14 SING N N 25 P8L SG C14 SING N N 26 P8L C8 C14 SING N N 27 P8L C8 C9 SING N N 28 P8L C10 C9 SING N N 29 P8L C10 C13 SING N N 30 P8L C10 C11 SING N N 31 P8L C13 C12 SING N N 32 P8L C12 N3 SING N N 33 P8L C11 O2 DOUB N N 34 P8L C11 N3 SING N N 35 P8L SG O6 DOUB N N 36 P8L N1 H1 SING N N 37 P8L C2 H2 SING N N 38 P8L C3 H3 SING N N 39 P8L C3 H4 SING N N 40 P8L C4 H5 SING N N 41 P8L C6 H6 SING N N 42 P8L C6 H7 SING N N 43 P8L C6 H8 SING N N 44 P8L C8 H9 SING N N 45 P8L C9 H10 SING N N 46 P8L C9 H11 SING N N 47 P8L C10 H12 SING N N 48 P8L C16 H13 SING N N 49 P8L C17 H14 SING N N 50 P8L C19 H15 SING N N 51 P8L C20 H16 SING N N 52 P8L C20 H17 SING N N 53 P8L C21 H18 SING N N 54 P8L C21 H19 SING N N 55 P8L C22 H20 SING N N 56 P8L C22 H21 SING N N 57 P8L C12 H22 SING N N 58 P8L C12 H23 SING N N 59 P8L C13 H24 SING N N 60 P8L C13 H25 SING N N 61 P8L C14 H26 SING N N 62 P8L C15 H27 SING N N 63 P8L C15 H28 SING N N 64 P8L C18 H29 SING N N 65 P8L C18 H30 SING N N 66 P8L C23 H31 SING N N 67 P8L C23 H32 SING N N 68 P8L C24 H33 SING N N 69 P8L C24 H34 SING N N 70 P8L C5 H35 SING N N 71 P8L C5 H36 SING N N 72 P8L C5 H37 SING N N 73 P8L N2 H38 SING N N 74 P8L N3 H39 SING N N 75 P8L O3 H40 SING N N 76 P8L SG O7 SING N N 77 P8L SG O8 SING N N 78 P8L O7 H41 SING N N 79 P8L O8 H42 SING N N 80 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P8L InChI InChI 1.03 "InChI=1S/C24H40N3O8S/c1-14(2)10-19(27-24(31)35-13-17-11-18(17)15-6-4-3-5-7-15)22(29)26-20(23(30)36(32,33)34)12-16-8-9-25-21(16)28/h14-20,23,30H,3-13H2,1-2H3,(H3-2,25,26,27,28,29,31,32,33,34)/q-1/p+2/t16-,17+,18+,19-,20-,23+/m0/s1" P8L InChIKey InChI 1.03 BNNIGFVXMNVYNU-HUWCRECTSA-P P8L SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]1C2CCCCC2)C(=O)N[C@@H](C[C@@H]3CCNC3=O)[C@H](O)[S+](O)(O)=O" P8L SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]1C2CCCCC2)C(=O)N[CH](C[CH]3CCNC3=O)[CH](O)[S+](O)(O)=O" P8L SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CCNC1=O)[C@H](O)[S+](=O)(O)O)NC(=O)OC[C@H]2C[C@@H]2C3CCCCC3" P8L SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CCNC1=O)C(O)[S+](=O)(O)O)NC(=O)OCC2CC2C3CCCCC3" # _pdbx_chem_comp_identifier.comp_id P8L _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{S},2~{R})-2-cyclohexylcyclopropyl]methyl ~{N}-[(2~{S})-1-[[(1~{R},2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{S})-2-oxidanylidenepyrrolidin-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P8L "Create component" 2022-05-26 RCSB P8L "Modify coordinates" 2022-05-26 RCSB P8L "Modify coordinates" 2022-06-13 RCSB P8L "Initial release" 2022-06-22 RCSB #