data_P8P
#
_chem_comp.id P8P
_chem_comp.name "(2R)-3-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}propane-1,2-diyl dioctanoate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H38 O11 P2"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms "dioctanoylglycerol pyrophosphate"
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2011-07-06
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 504.446
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P8P
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3SPC
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site RCSB
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P8P O1 O1 O 0 1 N N N 18.491 8.897 62.701 -1.570 2.304 -0.564 O1 P8P 1
P8P P1 P1 P 0 1 N N N 19.309 9.077 61.321 -0.469 2.576 0.578 P1 P8P 2
P8P P2 P2 P 0 1 N N N 18.905 7.801 63.809 -2.741 3.190 -1.223 P2 P8P 3
P8P O11 O11 O 0 1 N N N 20.384 10.121 61.522 0.698 3.515 -0.014 O11 P8P 4
P8P O12 O12 O 0 1 N N N 19.684 7.706 60.806 -1.109 3.252 1.729 O12 P8P 5
P8P O13 O13 O 0 1 N N N 18.156 9.701 60.380 0.162 1.176 1.061 O13 P8P 6
P8P C1A C1A C 0 1 N N N 14.691 10.299 58.777 3.540 -0.711 1.163 C1A P8P 7
P8P O1A O1A O 0 1 N N N 14.105 11.035 59.554 4.091 -0.208 2.114 O1A P8P 8
P8P C1B C1B C 0 1 N N N 18.998 9.088 55.370 -1.837 -1.700 1.439 C1B P8P 9
P8P O1B O1B O 0 1 N N N 18.817 7.887 55.493 -2.087 -2.444 2.358 O1B P8P 10
P8P C1C C1C C 0 1 N N N 18.409 10.205 59.069 1.094 1.073 2.140 C1C P8P 11
P8P O21 O21 O 0 1 N N N 18.840 6.487 63.069 -2.225 4.543 -1.527 O21 P8P 12
P8P O22 O22 O 0 1 N N N 20.302 8.205 64.219 -3.244 2.490 -2.583 O22 P8P 13
P8P O23 O23 O 0 1 N N N 17.860 7.962 64.890 -3.972 3.305 -0.191 O23 P8P 14
P8P C2A C2A C 0 1 N N N 14.010 9.862 57.500 4.352 -1.172 -0.020 C2A P8P 15
P8P C2B C2B C 0 1 N N N 19.935 9.616 54.308 -2.828 -1.531 0.316 C2B P8P 16
P8P C2C C2C C 0 1 N N R 17.086 10.333 58.316 1.489 -0.392 2.333 C2C P8P 17
P8P O2C O2C O 0 1 N N N 16.026 9.831 59.136 2.206 -0.859 1.161 O2C P8P 18
P8P C3A C3A C 0 1 N N N 12.602 10.447 57.452 5.833 -0.890 0.236 C3A P8P 19
P8P C3B C3B C 0 1 N N N 21.359 9.647 54.852 -4.056 -2.404 0.583 C3B P8P 20
P8P C3C C3C C 0 1 N N N 17.201 9.519 57.035 0.230 -1.238 2.532 C3C P8P 21
P8P O3C O3C O 0 1 N N N 18.308 9.998 56.272 -0.677 -1.026 1.418 O3C P8P 22
P8P C4A C4A C 0 1 N N N 11.928 10.148 56.118 6.657 -1.358 -0.965 C4A P8P 23
P8P C4B C4B C 0 1 N N N 22.354 9.981 53.747 -5.062 -2.231 -0.557 C4B P8P 24
P8P C5A C5A C 0 1 N N N 10.619 10.917 55.977 8.139 -1.075 -0.709 C5A P8P 25
P8P C6A C6A C 0 1 N N N 10.052 10.761 54.571 8.963 -1.543 -1.910 C6A P8P 26
P8P C7A C7A C 0 1 N N N 8.726 11.499 54.410 10.444 -1.261 -1.654 C7A P8P 27
P8P C8A C8A C 0 1 N N N 8.902 12.996 54.547 11.268 -1.729 -2.855 C8A P8P 28
P8P HO11 HO11 H 0 0 N N N 21.228 9.758 61.281 1.162 3.134 -0.773 HO11 P8P 29
P8P H1C H1C H 0 1 N N N 18.889 11.192 59.140 1.982 1.662 1.910 H1C P8P 30
P8P H1CA H1CA H 0 0 N N N 19.074 9.514 58.531 0.634 1.449 3.054 H1CA P8P 31
P8P HO22 HO22 H 0 0 N N N 20.920 7.543 63.933 -3.951 2.970 -3.034 HO22 P8P 32
P8P HO23 HO23 H 0 0 N N N 17.318 7.183 64.925 -4.361 2.454 0.053 HO23 P8P 33
P8P H2A H2A H 0 1 N N N 14.587 10.221 56.635 4.206 -2.243 -0.166 H2A P8P 34
P8P H2AA H2AA H 0 0 N N N 13.953 8.764 57.471 4.029 -0.637 -0.913 H2AA P8P 35
P8P H2B H2B H 0 1 N N N 19.895 8.960 53.426 -3.132 -0.485 0.255 H2B P8P 36
P8P H2BA H2BA H 0 0 N N N 19.630 10.634 54.024 -2.366 -1.831 -0.624 H2BA P8P 37
P8P H2C H2C H 0 1 N N N 16.868 11.383 58.073 2.129 -0.483 3.211 H2C P8P 38
P8P H3A H3A H 0 1 N N N 12.004 10.003 58.261 5.979 0.181 0.381 H3A P8P 39
P8P H3AA H3AA H 0 0 N N N 12.664 11.537 57.584 6.156 -1.425 1.129 H3AA P8P 40
P8P H3B H3B H 0 1 N N N 21.426 10.413 55.638 -3.752 -3.449 0.645 H3B P8P 41
P8P H3BA H3BA H 0 0 N N N 21.605 8.659 55.269 -4.517 -2.103 1.524 H3BA P8P 42
P8P H3C H3C H 0 1 N N N 17.357 8.459 57.285 0.504 -2.292 2.581 H3C P8P 43
P8P H3CA H3CA H 0 0 N N N 16.277 9.623 56.448 -0.261 -0.947 3.460 H3CA P8P 44
P8P H4A H4A H 0 1 N N N 12.605 10.444 55.303 6.511 -2.428 -1.110 H4A P8P 45
P8P H4AA H4AA H 0 0 N N N 11.716 9.070 56.060 6.334 -0.823 -1.858 H4AA P8P 46
P8P H4B H4B H 0 1 N N N 22.745 9.050 53.312 -5.365 -1.186 -0.618 H4B P8P 47
P8P H4BA H4BA H 0 0 N N N 21.850 10.568 52.965 -4.600 -2.531 -1.497 H4BA P8P 48
P8P C16 C16 C 0 1 N N N 23.517 10.801 54.335 -6.289 -3.104 -0.290 C16 P8P 49
P8P H5A H5A H 0 1 N N N 9.892 10.525 56.703 8.285 -0.005 -0.563 H5A P8P 50
P8P H5AA H5AA H 0 0 N N N 10.806 11.983 56.173 8.462 -1.610 0.184 H5AA P8P 51
P8P H6A H6A H 0 1 N N N 10.775 11.173 53.851 8.817 -2.614 -2.055 H6A P8P 52
P8P H6AA H6AA H 0 0 N N N 9.887 9.691 54.374 8.640 -1.008 -2.803 H6AA P8P 53
P8P H7A H7A H 0 1 N N N 8.318 11.280 53.412 10.590 -0.190 -1.508 H7A P8P 54
P8P H7AA H7AA H 0 0 N N N 8.031 11.152 55.188 10.767 -1.796 -0.761 H7AA P8P 55
P8P H8A H8A H 0 1 N N N 7.928 13.493 54.425 10.945 -1.194 -3.748 H8A P8P 56
P8P H8AA H8AA H 0 0 N N N 9.310 13.228 55.542 12.324 -1.528 -2.672 H8AA P8P 57
P8P H8AB H8AB H 0 0 N N N 9.596 13.356 53.773 11.122 -2.799 -3.000 H8AB P8P 58
P8P C17 C17 C 0 1 N N N 24.667 11.270 53.423 -7.295 -2.932 -1.430 C17 P8P 59
P8P C18 C18 C 0 1 N N N 25.830 12.090 54.011 -8.523 -3.805 -1.163 C18 P8P 60
P8P C19 C19 C 0 1 N N N 26.979 12.559 53.099 -9.529 -3.632 -2.303 C19 P8P 61
P8P H30 H30 H 0 1 N N N 23.067 11.714 54.752 -5.986 -4.149 -0.228 H30 P8P 62
P8P H31 H31 H 0 1 N N N 23.978 10.167 55.106 -6.751 -2.804 0.651 H31 P8P 63
P8P H32 H32 H 0 1 N N N 25.117 10.357 53.006 -7.599 -1.887 -1.491 H32 P8P 64
P8P H33 H33 H 0 1 N N N 24.206 11.904 52.652 -6.834 -3.232 -2.370 H33 P8P 65
P8P H34 H34 H 0 1 N N N 25.380 13.003 54.428 -8.219 -4.850 -1.101 H34 P8P 66
P8P H35 H35 H 0 1 N N N 26.292 11.456 54.782 -8.985 -3.505 -0.222 H35 P8P 67
P8P H36 H36 H 0 1 N N N 27.711 13.126 53.693 -9.833 -2.587 -2.364 H36 P8P 68
P8P H37 H37 H 0 1 N N N 27.471 11.684 52.650 -9.067 -3.932 -3.243 H37 P8P 69
P8P H38 H38 H 0 1 N N N 26.576 13.202 52.303 -10.404 -4.254 -2.112 H38 P8P 70
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P8P O1 P2 SING N N 1
P8P P1 O1 SING N N 2
P8P P1 O11 SING N N 3
P8P P2 O22 SING N N 4
P8P P2 O23 SING N N 5
P8P O11 HO11 SING N N 6
P8P O12 P1 DOUB N N 7
P8P O13 P1 SING N N 8
P8P C1A O2C SING N N 9
P8P C1A O1A DOUB N N 10
P8P C1B O1B DOUB N N 11
P8P C1B O3C SING N N 12
P8P C1C O13 SING N N 13
P8P C1C H1C SING N N 14
P8P C1C H1CA SING N N 15
P8P O21 P2 DOUB N N 16
P8P O22 HO22 SING N N 17
P8P O23 HO23 SING N N 18
P8P C2A C1A SING N N 19
P8P C2A H2A SING N N 20
P8P C2A H2AA SING N N 21
P8P C2B C1B SING N N 22
P8P C2B C3B SING N N 23
P8P C2B H2B SING N N 24
P8P C2B H2BA SING N N 25
P8P C2C C1C SING N N 26
P8P C2C O2C SING N N 27
P8P C2C H2C SING N N 28
P8P C3A C2A SING N N 29
P8P C3A H3A SING N N 30
P8P C3A H3AA SING N N 31
P8P C3B H3B SING N N 32
P8P C3B H3BA SING N N 33
P8P C3C C2C SING N N 34
P8P C3C H3C SING N N 35
P8P C3C H3CA SING N N 36
P8P O3C C3C SING N N 37
P8P C4A C3A SING N N 38
P8P C4A H4A SING N N 39
P8P C4A H4AA SING N N 40
P8P C4B C3B SING N N 41
P8P C4B H4B SING N N 42
P8P C4B H4BA SING N N 43
P8P C4B C16 SING N N 44
P8P C5A C4A SING N N 45
P8P C5A H5A SING N N 46
P8P C5A H5AA SING N N 47
P8P C6A C5A SING N N 48
P8P C6A H6A SING N N 49
P8P C6A H6AA SING N N 50
P8P C7A C6A SING N N 51
P8P C7A C8A SING N N 52
P8P C7A H7A SING N N 53
P8P C7A H7AA SING N N 54
P8P C8A H8A SING N N 55
P8P C8A H8AA SING N N 56
P8P C8A H8AB SING N N 57
P8P C16 C17 SING N N 58
P8P C17 C18 SING N N 59
P8P C18 C19 SING N N 60
P8P C16 H30 SING N N 61
P8P C16 H31 SING N N 62
P8P C17 H32 SING N N 63
P8P C17 H33 SING N N 64
P8P C18 H34 SING N N 65
P8P C18 H35 SING N N 66
P8P C19 H36 SING N N 67
P8P C19 H37 SING N N 68
P8P C19 H38 SING N N 69
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P8P SMILES ACDLabs 12.01 "O=P(O)(O)OP(=O)(OCC(OC(=O)CCCCCCC)COC(=O)CCCCCCC)O"
P8P InChI InChI 1.03 "InChI=1S/C19H38O11P2/c1-3-5-7-9-11-13-18(20)27-15-17(16-28-32(25,26)30-31(22,23)24)29-19(21)14-12-10-8-6-4-2/h17H,3-16H2,1-2H3,(H,25,26)(H2,22,23,24)/t17-/m1/s1"
P8P InChIKey InChI 1.03 MBDSUZSCJLRKPC-QGZVFWFLSA-N
P8P SMILES_CANONICAL CACTVS 3.370 "CCCCCCCC(=O)OC[C@H](CO[P](O)(=O)O[P](O)(O)=O)OC(=O)CCCCCCC"
P8P SMILES CACTVS 3.370 "CCCCCCCC(=O)OC[CH](CO[P](O)(=O)O[P](O)(O)=O)OC(=O)CCCCCCC"
P8P SMILES_CANONICAL "OpenEye OEToolkits" 1.7.2 "CCCCCCCC(=O)OC[C@H](CO[P@@](=O)(O)OP(=O)(O)O)OC(=O)CCCCCCC"
P8P SMILES "OpenEye OEToolkits" 1.7.2 "CCCCCCCC(=O)OCC(COP(=O)(O)OP(=O)(O)O)OC(=O)CCCCCCC"
# #
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P8P "SYSTEMATIC NAME" ACDLabs 12.01 "(2R)-3-{[(R)-hydroxy(phosphonooxy)phosphoryl]oxy}propane-1,2-diyl dioctanoate"
P8P "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.2 "[(2R)-2-octanoyloxy-3-[oxidanyl(phosphonooxy)phosphoryl]oxy-propyl] octanoate"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P8P "Create component" 2011-07-06 RCSB
P8P "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id P8P
_pdbx_chem_comp_synonyms.name "dioctanoylglycerol pyrophosphate"
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##