data_P8Y # _chem_comp.id P8Y _chem_comp.name "(2S,3S,4S,5R)-2-{[(4-methylpentyl)sulfonyl]methyl}piperidine-3,4,5-triol" _chem_comp.type NON-POLYMER _chem_comp.pdbx_type HETAIN _chem_comp.formula "C12 H25 N O5 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2019-08-06 _chem_comp.pdbx_modified_date 2020-08-14 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 295.396 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P8Y _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 6Q1P _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P8Y C1 C1 C 0 1 N N N -47.464 38.070 -6.387 3.500 -0.013 0.175 C1 P8Y 1 P8Y C11 C2 C 0 1 N N N -47.349 36.041 -8.396 7.188 1.060 -0.067 C11 P8Y 2 P8Y C16 C3 C 0 1 N N N -44.169 40.050 -6.369 -0.568 0.467 -0.746 C16 P8Y 3 P8Y C18 C4 C 0 1 N N N -46.249 37.842 -5.463 2.234 0.562 -0.461 C18 P8Y 4 P8Y C2 C5 C 0 1 N N N -47.239 38.458 -7.852 4.719 0.773 -0.314 C2 P8Y 5 P8Y C3 C6 C 0 1 N N S -43.397 41.213 -5.690 -1.896 -0.196 -0.373 C3 P8Y 6 P8Y C4 C7 C 0 1 N N S -42.564 41.940 -6.728 -3.026 0.427 -1.196 C4 P8Y 7 P8Y C5 C8 C 0 1 N N S -41.545 40.995 -7.348 -4.355 -0.225 -0.805 C5 P8Y 8 P8Y C6 C9 C 0 1 N N R -40.630 40.517 -6.250 -4.583 -0.039 0.698 C6 P8Y 9 P8Y C7 C10 C 0 1 N N N -41.462 39.799 -5.206 -3.408 -0.648 1.467 C7 P8Y 10 P8Y C8 C11 C 0 1 N N N -46.521 37.310 -8.562 5.986 0.198 0.323 C8 P8Y 11 P8Y C9 C12 C 0 1 N N N -46.560 37.591 -10.058 6.201 -1.233 -0.173 C9 P8Y 12 P8Y N2 N1 N 0 1 N N N -42.476 40.715 -4.645 -2.160 0.010 1.057 N2 P8Y 13 P8Y O10 O1 O 0 1 N N N -39.637 39.626 -6.793 -4.677 1.355 0.997 O10 P8Y 14 P8Y O12 O2 O 0 1 N N N -43.471 42.440 -7.715 -3.088 1.831 -0.937 O12 P8Y 15 P8Y O13 O3 O 0 1 N N N -46.204 40.418 -4.662 0.640 -0.152 1.515 O13 P8Y 16 P8Y O14 O4 O 0 1 N N N -44.361 38.997 -3.851 0.884 -1.702 -0.369 O14 P8Y 17 P8Y O8 O5 O 0 1 N N N -40.781 41.700 -8.334 -4.311 -1.620 -1.112 O8 P8Y 18 P8Y S17 S1 S 0 1 N N N -45.227 39.316 -5.060 0.789 -0.370 0.118 S17 P8Y 19 P8Y H1 H1 H 0 1 N N N -48.065 38.872 -5.933 3.429 0.065 1.260 H1 P8Y 20 P8Y H2 H2 H 0 1 N N N -48.043 37.135 -6.390 3.606 -1.061 -0.108 H2 P8Y 21 P8Y H3 H3 H 0 1 N N N -47.378 35.758 -7.334 7.035 2.079 0.286 H3 P8Y 22 P8Y H4 H4 H 0 1 N N N -48.373 36.222 -8.755 8.091 0.650 0.387 H4 P8Y 23 P8Y H5 H5 H 0 1 N N N -46.894 35.227 -8.980 7.296 1.063 -1.152 H5 P8Y 24 P8Y H6 H6 H 0 1 N N N -44.790 40.432 -7.193 -0.415 0.392 -1.822 H6 P8Y 25 P8Y H7 H7 H 0 1 N N N -43.465 39.299 -6.758 -0.592 1.517 -0.455 H7 P8Y 26 P8Y H8 H8 H 0 1 N N N -46.624 37.428 -4.516 2.128 1.609 -0.179 H8 P8Y 27 P8Y H9 H9 H 0 1 N N N -45.593 37.106 -5.951 2.305 0.484 -1.546 H9 P8Y 28 P8Y H10 H10 H 0 1 N N N -46.622 39.367 -7.903 4.790 0.695 -1.399 H10 P8Y 29 P8Y H11 H11 H 0 1 N N N -48.208 38.645 -8.338 4.613 1.820 -0.031 H11 P8Y 30 P8Y H12 H12 H 0 1 N N N -44.122 41.912 -5.248 -1.840 -1.264 -0.582 H12 P8Y 31 P8Y H13 H13 H 0 1 N N N -42.032 42.772 -6.243 -2.837 0.260 -2.257 H13 P8Y 32 P8Y H14 H14 H 0 1 N N N -42.066 40.137 -7.798 -5.168 0.245 -1.358 H14 P8Y 33 P8Y H15 H15 H 0 1 N N N -40.142 41.386 -5.784 -5.507 -0.538 0.990 H15 P8Y 34 P8Y H16 H16 H 0 1 N N N -41.966 38.939 -5.671 -3.560 -0.504 2.536 H16 P8Y 35 P8Y H17 H17 H 0 1 N N N -40.805 39.445 -4.398 -3.345 -1.714 1.249 H17 P8Y 36 P8Y H18 H18 H 0 1 N N N -45.492 37.180 -8.194 5.878 0.194 1.408 H18 P8Y 37 P8Y H19 H19 H 0 1 N N N -45.981 38.501 -10.276 7.104 -1.643 0.280 H19 P8Y 38 P8Y H20 H20 H 0 1 N N N -46.124 36.740 -10.602 5.345 -1.847 0.105 H20 P8Y 39 P8Y H21 H21 H 0 1 N N N -47.603 37.735 -10.377 6.310 -1.230 -1.258 H21 P8Y 40 P8Y H22 H22 H 0 1 N N N -42.012 41.494 -4.223 -1.384 -0.308 1.618 H22 P8Y 41 P8Y H24 H24 H 0 1 N N N -39.063 39.328 -6.097 -4.822 1.548 1.933 H24 P8Y 42 P8Y H25 H25 H 0 1 N N N -44.096 43.026 -7.304 -3.783 2.291 -1.427 H25 P8Y 43 P8Y H26 H26 H 0 1 N N N -40.144 41.112 -8.722 -5.122 -2.097 -0.889 H26 P8Y 44 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P8Y C9 C8 SING N N 1 P8Y C8 C11 SING N N 2 P8Y C8 C2 SING N N 3 P8Y O8 C5 SING N N 4 P8Y C2 C1 SING N N 5 P8Y O12 C4 SING N N 6 P8Y C5 C4 SING N N 7 P8Y C5 C6 SING N N 8 P8Y O10 C6 SING N N 9 P8Y C4 C3 SING N N 10 P8Y C1 C18 SING N N 11 P8Y C16 C3 SING N N 12 P8Y C16 S17 SING N N 13 P8Y C6 C7 SING N N 14 P8Y C3 N2 SING N N 15 P8Y C18 S17 SING N N 16 P8Y C7 N2 SING N N 17 P8Y S17 O13 DOUB N N 18 P8Y S17 O14 DOUB N N 19 P8Y C1 H1 SING N N 20 P8Y C1 H2 SING N N 21 P8Y C11 H3 SING N N 22 P8Y C11 H4 SING N N 23 P8Y C11 H5 SING N N 24 P8Y C16 H6 SING N N 25 P8Y C16 H7 SING N N 26 P8Y C18 H8 SING N N 27 P8Y C18 H9 SING N N 28 P8Y C2 H10 SING N N 29 P8Y C2 H11 SING N N 30 P8Y C3 H12 SING N N 31 P8Y C4 H13 SING N N 32 P8Y C5 H14 SING N N 33 P8Y C6 H15 SING N N 34 P8Y C7 H16 SING N N 35 P8Y C7 H17 SING N N 36 P8Y C8 H18 SING N N 37 P8Y C9 H19 SING N N 38 P8Y C9 H20 SING N N 39 P8Y C9 H21 SING N N 40 P8Y N2 H22 SING N N 41 P8Y O10 H24 SING N N 42 P8Y O12 H25 SING N N 43 P8Y O8 H26 SING N N 44 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P8Y SMILES ACDLabs 12.01 "C(CS(CC1NCC(C(C1O)O)O)(=O)=O)CC(C)C" P8Y InChI InChI 1.03 "InChI=1S/C12H25NO5S/c1-8(2)4-3-5-19(17,18)7-9-11(15)12(16)10(14)6-13-9/h8-16H,3-7H2,1-2H3/t9-,10-,11+,12+/m1/s1" P8Y InChIKey InChI 1.03 MIGRFAIIVQTLPR-WYUUTHIRSA-N P8Y SMILES_CANONICAL CACTVS 3.385 "CC(C)CCC[S](=O)(=O)C[C@H]1NC[C@@H](O)[C@H](O)[C@H]1O" P8Y SMILES CACTVS 3.385 "CC(C)CCC[S](=O)(=O)C[CH]1NC[CH](O)[CH](O)[CH]1O" P8Y SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)CCCS(=O)(=O)C[C@@H]1[C@@H]([C@H]([C@@H](CN1)O)O)O" P8Y SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CCCS(=O)(=O)CC1C(C(C(CN1)O)O)O" # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier P8Y "SYSTEMATIC NAME" ACDLabs 12.01 "(2S,3S,4S,5R)-2-{[(4-methylpentyl)sulfonyl]methyl}piperidine-3,4,5-triol" P8Y "SYSTEMATIC NAME" "OpenEye OEToolkits" 2.0.7 "(2~{S},3~{S},4~{S},5~{R})-2-(4-methylpentylsulfonylmethyl)piperidine-3,4,5-triol" # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P8Y "Create component" 2019-08-06 RCSB P8Y "Initial release" 2020-08-19 RCSB ##