data_P9D
#
_chem_comp.id P9D
_chem_comp.name "[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate"
_chem_comp.type NON-POLYMER
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C31 H39 N11 O6 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms ?
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2012-01-06
_chem_comp.pdbx_modified_date 2013-06-28
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 693.776
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P9D
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 3VMU
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBJ
#
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9D C1 C1 C 0 1 N N N -59.006 30.897 -42.959 10.017 -4.856 -1.867 C1 P9D 1
P9D C2 C2 C 0 1 N N N -58.777 32.059 -43.902 10.078 -3.862 -0.705 C2 P9D 2
P9D C3 C3 C 0 1 N N N -59.141 31.627 -45.320 10.759 -2.573 -1.172 C3 P9D 3
P9D C4 C4 C 0 1 Y N N -57.346 32.459 -43.765 8.681 -3.549 -0.236 C4 P9D 4
P9D C5 C5 C 0 1 N N N -59.613 33.252 -43.477 10.878 -4.472 0.447 C5 P9D 5
P9D N6 N6 N 0 1 Y N N -56.374 31.818 -44.463 8.074 -2.410 -0.510 N6 P9D 6
P9D C7 C7 C 0 1 Y N N -55.218 32.410 -44.102 6.871 -2.260 -0.050 C7 P9D 7
P9D S8 S8 S 0 1 Y N N -55.380 33.607 -43.017 6.397 -3.653 0.820 S8 P9D 8
P9D C9 C9 C 0 1 Y N N -57.010 33.484 -42.883 7.954 -4.406 0.485 C9 P9D 9
P9D N10 N10 N 0 1 N N N -54.031 32.050 -44.597 6.083 -1.132 -0.237 N10 P9D 10
P9D C11 C11 C 0 1 N N N -53.056 32.922 -44.800 4.842 -1.083 0.286 C11 P9D 11
P9D C12 C12 C 0 1 N N N -51.915 32.377 -45.579 4.001 0.120 0.086 C12 P9D 12
P9D O13 O13 O 0 1 N N N -53.032 34.074 -44.382 4.413 -2.025 0.922 O13 P9D 13
P9D C14 C14 C 0 1 N N N -52.175 31.327 -46.469 2.726 0.180 0.620 C14 P9D 14
P9D C15 C15 C 0 1 N N N -51.135 30.786 -47.196 1.947 1.336 0.416 C15 P9D 15
P9D N16 N16 N 0 1 N N N -49.795 31.331 -46.982 2.460 2.378 -0.305 N16 P9D 16
P9D C17 C17 C 0 1 N N N -49.564 32.414 -46.053 3.718 2.312 -0.830 C17 P9D 17
P9D C18 C18 C 0 1 N N N -50.645 32.917 -45.356 4.493 1.223 -0.647 C18 P9D 18
P9D N19 N19 N 0 1 N N N -51.377 29.779 -48.083 0.721 1.388 0.932 N19 P9D 19
P9D C20 C20 C 0 1 N N N -48.680 30.791 -47.725 1.721 3.492 -0.508 C20 P9D 20
P9D C21 C21 C 0 1 N N N -50.382 29.195 -48.832 -0.057 2.450 0.771 C21 P9D 21
P9D C22 C22 C 0 1 N N N -48.963 29.677 -48.692 0.419 3.557 0.037 C22 P9D 22
P9D O23 O23 O 0 1 N N N -47.537 31.266 -47.543 2.172 4.426 -1.150 O23 P9D 23
P9D N24 N24 N 0 1 N N N -50.683 28.146 -49.728 -1.323 2.473 1.318 N24 P9D 24
P9D C25 C25 C 0 1 N N N -47.861 29.075 -49.481 -0.416 4.744 -0.157 C25 P9D 25
P9D C26 C26 C 0 1 N N N -46.662 29.164 -48.932 0.006 5.743 -0.962 C26 P9D 26
P9D C27 C27 C 0 1 Y N N -45.406 28.645 -49.516 -0.755 6.992 -1.041 C27 P9D 27
P9D N28 N28 N 0 1 Y N N -45.310 27.422 -50.041 -1.866 7.281 -0.385 N28 P9D 28
P9D N29 N29 N 0 1 Y N N -43.969 27.333 -50.438 -2.271 8.462 -0.686 N29 P9D 29
P9D N30 N30 N 0 1 Y N N -43.336 28.555 -50.109 -1.474 9.012 -1.536 N30 P9D 30
P9D N31 N31 N 0 1 Y N N -44.284 29.387 -49.498 -0.451 8.086 -1.801 N31 P9D 31
P9D C32 C32 C 0 1 N N N -51.263 26.888 -49.200 -2.492 2.083 0.517 C32 P9D 32
P9D C33 C33 C 0 1 N N R -50.785 25.627 -49.940 -3.266 0.997 1.270 C33 P9D 33
P9D O34 O34 O 0 1 N N N -50.209 24.592 -49.090 -4.491 0.690 0.555 O34 P9D 34
P9D C35 C35 C 0 1 N N N -49.842 26.024 -51.063 -3.606 1.499 2.675 C35 P9D 35
P9D C36 C36 C 0 1 N N N -50.480 27.109 -51.906 -2.313 1.791 3.441 C36 P9D 36
P9D C37 C37 C 0 1 N N N -50.418 28.415 -51.142 -1.528 2.881 2.714 C37 P9D 37
P9D C38 C38 C 0 1 N N N -48.771 24.623 -48.719 -4.965 -0.565 0.664 C38 P9D 38
P9D N39 N39 N 0 1 N N N -47.849 23.835 -49.320 -6.099 -0.915 0.025 N39 P9D 39
P9D C40 C40 C 0 1 N N N -46.748 24.329 -50.142 -6.615 -2.281 0.143 C40 P9D 40
P9D C41 C41 C 0 1 N N N -46.482 23.473 -51.393 -7.903 -2.413 -0.673 C41 P9D 41
P9D N42 N42 N 1 1 N N N -46.479 24.149 -52.734 -8.420 -3.782 -0.554 N42 P9D 42
P9D C43 C43 C 0 1 N N N -47.799 24.765 -53.045 -9.656 -3.909 -1.337 C43 P9D 43
P9D O44 O44 O 0 1 N N N -48.458 25.367 -47.810 -4.371 -1.383 1.338 O44 P9D 44
P9D C45 C45 C 0 1 N N N -48.955 23.958 -53.666 -10.163 -5.325 -1.252 C45 P9D 45
P9D O46 O46 O -1 1 N N N -49.207 22.756 -53.351 -9.615 -6.125 -0.512 O46 P9D 46
P9D O47 O47 O 0 1 N N N -49.668 24.583 -54.497 -11.120 -5.672 -1.923 O47 P9D 47
P9D C48 C48 C 0 1 N N N -45.455 25.210 -52.793 -7.419 -4.729 -1.063 C48 P9D 48
P9D C49 C49 C 0 1 N N N -46.078 23.176 -53.773 -8.702 -4.079 0.857 C49 P9D 49
P9D H1 H1 H 0 1 N N N -58.746 31.199 -41.934 11.028 -5.081 -2.206 H1 P9D 50
P9D H1A H1A H 0 1 N N N -60.064 30.598 -42.996 9.532 -5.773 -1.534 H1A P9D 51
P9D H1B H1B H 0 1 N N N -58.375 30.049 -43.262 9.447 -4.420 -2.688 H1B P9D 52
P9D H3 H3 H 0 1 N N N -58.978 32.466 -46.013 10.189 -2.138 -1.993 H3 P9D 53
P9D H3A H3A H 0 1 N N N -58.509 30.777 -45.618 10.803 -1.865 -0.344 H3A P9D 54
P9D H3B H3B H 0 1 N N N -60.199 31.326 -45.351 11.770 -2.799 -1.511 H3B P9D 55
P9D H5 H5 H 0 1 N N N -59.438 34.089 -44.169 11.889 -4.698 0.108 H5 P9D 56
P9D H5A H5A H 0 1 N N N -60.678 32.978 -43.495 10.922 -3.764 1.275 H5A P9D 57
P9D H5B H5B H 0 1 N N N -59.329 33.554 -42.458 10.394 -5.390 0.780 H5B P9D 58
P9D H9 H9 H 0 1 N N N -57.671 34.064 -42.256 8.266 -5.388 0.807 H9 P9D 59
P9D HN10 HN10 H 0 0 N N N -53.873 31.088 -44.822 6.425 -0.380 -0.745 HN10 P9D 60
P9D H14 H14 H 0 1 N N N -53.179 30.945 -46.585 2.332 -0.650 1.188 H14 P9D 61
P9D H17 H17 H 0 1 N N N -48.573 32.819 -45.908 4.102 3.148 -1.396 H17 P9D 62
P9D H18 H18 H 0 1 N N N -50.511 33.719 -44.646 5.489 1.193 -1.065 H18 P9D 63
P9D H25 H25 H 0 1 N N N -48.026 28.598 -50.436 -1.370 4.821 0.344 H25 P9D 64
P9D H26 H26 H 0 1 N N N -46.593 29.658 -47.974 0.905 5.621 -1.548 H26 P9D 65
P9D HN31 HN31 H 0 0 N N N -44.157 30.310 -49.136 0.307 8.198 -2.396 HN31 P9D 66
P9D H32 H32 H 0 1 N N N -50.984 26.795 -48.140 -3.135 2.950 0.363 H32 P9D 67
P9D H32A H32A H 0 0 N N N -52.358 26.947 -49.287 -2.161 1.695 -0.447 H32A P9D 68
P9D H33 H33 H 0 1 N N N -51.676 25.195 -50.419 -2.653 0.098 1.343 H33 P9D 69
P9D H35 H35 H 0 1 N N N -48.901 26.400 -50.635 -4.198 2.411 2.601 H35 P9D 70
P9D H35A H35A H 0 0 N N N -49.634 25.147 -51.693 -4.178 0.738 3.205 H35A P9D 71
P9D H36 H36 H 0 1 N N N -49.934 27.209 -52.856 -2.556 2.127 4.449 H36 P9D 72
P9D H36A H36A H 0 0 N N N -51.529 26.850 -52.112 -1.710 0.885 3.494 H36A P9D 73
P9D H37 H37 H 0 1 N N N -51.175 29.110 -51.535 -0.562 3.019 3.200 H37 P9D 74
P9D H37A H37A H 0 0 N N N -49.419 28.861 -51.253 -2.091 3.814 2.743 H37A P9D 75
P9D HN39 HN39 H 0 0 N N N -47.927 22.846 -49.192 -6.574 -0.262 -0.513 HN39 P9D 76
P9D H40 H40 H 0 1 N N N -46.987 25.353 -50.465 -5.872 -2.984 -0.235 H40 P9D 77
P9D H40A H40A H 0 0 N N N -45.835 24.342 -49.529 -6.824 -2.501 1.190 H40A P9D 78
P9D H41 H41 H 0 1 N N N -45.495 23.005 -51.263 -8.646 -1.710 -0.295 H41 P9D 79
P9D H41A H41A H 0 0 N N N -47.257 22.693 -51.424 -7.694 -2.193 -1.720 H41A P9D 80
P9D H43 H43 H 0 1 N N N -48.181 25.168 -52.095 -10.410 -3.229 -0.939 H43 P9D 81
P9D H43A H43A H 0 0 N N N -47.595 25.594 -53.739 -9.454 -3.657 -2.378 H43A P9D 82
P9D H48 H48 H 0 1 N N N -45.476 25.686 -53.784 -6.533 -4.698 -0.429 H48 P9D 83
P9D H48A H48A H 0 0 N N N -45.663 25.964 -52.020 -7.835 -5.737 -1.056 H48A P9D 84
P9D H48B H48B H 0 0 N N N -44.462 24.771 -52.619 -7.146 -4.457 -2.082 H48B P9D 85
P9D H49 H49 H 0 1 N N N -46.075 23.669 -54.756 -9.510 -3.438 1.208 H49 P9D 86
P9D H49A H49A H 0 0 N N N -45.070 22.797 -53.550 -8.996 -5.123 0.957 H49A P9D 87
P9D H49B H49B H 0 0 N N N -46.791 22.338 -53.785 -7.807 -3.895 1.452 H49B P9D 88
#
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9D C1 C2 SING N N 1
P9D C2 C3 SING N N 2
P9D C2 C4 SING N N 3
P9D C2 C5 SING N N 4
P9D C4 N6 SING Y N 5
P9D C4 C9 DOUB Y N 6
P9D N6 C7 DOUB Y N 7
P9D C7 S8 SING Y N 8
P9D C7 N10 SING N N 9
P9D S8 C9 SING Y N 10
P9D N10 C11 SING N N 11
P9D C11 C12 SING N N 12
P9D C11 O13 DOUB N N 13
P9D C12 C14 DOUB N N 14
P9D C12 C18 SING N N 15
P9D C14 C15 SING N N 16
P9D C15 N16 SING N N 17
P9D C15 N19 DOUB N N 18
P9D N16 C17 SING N N 19
P9D N16 C20 SING N N 20
P9D C17 C18 DOUB N N 21
P9D N19 C21 SING N N 22
P9D C20 C22 SING N N 23
P9D C20 O23 DOUB N N 24
P9D C21 C22 DOUB N N 25
P9D C21 N24 SING N N 26
P9D C22 C25 SING N N 27
P9D N24 C32 SING N N 28
P9D N24 C37 SING N N 29
P9D C25 C26 DOUB N E 30
P9D C26 C27 SING N N 31
P9D C27 N28 DOUB Y N 32
P9D C27 N31 SING Y N 33
P9D N28 N29 SING Y N 34
P9D N29 N30 DOUB Y N 35
P9D N30 N31 SING Y N 36
P9D C32 C33 SING N N 37
P9D C33 O34 SING N N 38
P9D C33 C35 SING N N 39
P9D O34 C38 SING N N 40
P9D C35 C36 SING N N 41
P9D C36 C37 SING N N 42
P9D C38 N39 SING N N 43
P9D C38 O44 DOUB N N 44
P9D N39 C40 SING N N 45
P9D C40 C41 SING N N 46
P9D C41 N42 SING N N 47
P9D N42 C43 SING N N 48
P9D N42 C48 SING N N 49
P9D N42 C49 SING N N 50
P9D C43 C45 SING N N 51
P9D C45 O46 SING N N 52
P9D C45 O47 DOUB N N 53
P9D C1 H1 SING N N 54
P9D C1 H1A SING N N 55
P9D C1 H1B SING N N 56
P9D C3 H3 SING N N 57
P9D C3 H3A SING N N 58
P9D C3 H3B SING N N 59
P9D C5 H5 SING N N 60
P9D C5 H5A SING N N 61
P9D C5 H5B SING N N 62
P9D C9 H9 SING N N 63
P9D N10 HN10 SING N N 64
P9D C14 H14 SING N N 65
P9D C17 H17 SING N N 66
P9D C18 H18 SING N N 67
P9D C25 H25 SING N N 68
P9D C26 H26 SING N N 69
P9D N31 HN31 SING N N 70
P9D C32 H32 SING N N 71
P9D C32 H32A SING N N 72
P9D C33 H33 SING N N 73
P9D C35 H35 SING N N 74
P9D C35 H35A SING N N 75
P9D C36 H36 SING N N 76
P9D C36 H36A SING N N 77
P9D C37 H37 SING N N 78
P9D C37 H37A SING N N 79
P9D N39 HN39 SING N N 80
P9D C40 H40 SING N N 81
P9D C40 H40A SING N N 82
P9D C41 H41 SING N N 83
P9D C41 H41A SING N N 84
P9D C43 H43 SING N N 85
P9D C43 H43A SING N N 86
P9D C48 H48 SING N N 87
P9D C48 H48A SING N N 88
P9D C48 H48B SING N N 89
P9D C49 H49 SING N N 90
P9D C49 H49A SING N N 91
P9D C49 H49B SING N N 92
#
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9D SMILES ACDLabs 12.01 "O=C(Nc1nc(cs1)C(C)(C)C)C5=CC4=NC(N2CCCC(OC(=O)NCC[N+](CC([O-])=O)(C)C)C2)=C(\C=C\c3nnnn3)C(=O)N4C=C5"
P9D InChI InChI 1.03
;InChI=1S/C31H39N11O6S/c1-31(2,3)22-18-49-29(33-22)35-27(45)19-10-13-41-24(15-19)34-26(21(28(41)46)8-9-23-36-38-39-37-23)40-12-6-7-20(16-40)48-30(47)32-11-14-42(4,5)17-25(43)44/h8-10,13,15,18,20H,6-7,11-12,14,16-17H2,1-5H3,(H3-,32,33,35,36,37,38,39,43,44,45,47)/t20-/m1/s1
;
P9D InChIKey InChI 1.03 RVJNIKFVEAWLQC-HXUWFJFHSA-N
P9D SMILES_CANONICAL CACTVS 3.370 "CC(C)(C)c1csc(NC(=O)C2=CC3=NC(=C(\C=C\c4[nH]nnn4)C(=O)N3C=C2)N5CCC[C@H](C5)OC(=O)NCC[N+](C)(C)CC([O-])=O)n1"
P9D SMILES CACTVS 3.370 "CC(C)(C)c1csc(NC(=O)C2=CC3=NC(=C(C=Cc4[nH]nnn4)C(=O)N3C=C2)N5CCC[CH](C5)OC(=O)NCC[N+](C)(C)CC([O-])=O)n1"
P9D SMILES_CANONICAL "OpenEye OEToolkits" 1.7.6 "CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2)/C=C/c4[nH]nnn4)N5CCC[C@H](C5)OC(=O)NCC[N+](C)(C)CC(=O)[O-]"
P9D SMILES "OpenEye OEToolkits" 1.7.6 "CC(C)(C)c1csc(n1)NC(=O)C2=CC3=NC(=C(C(=O)N3C=C2)C=Cc4[nH]nnn4)N5CCCC(C5)OC(=O)NCC[N+](C)(C)CC(=O)[O-]"
#
loop_
_pdbx_chem_comp_identifier.comp_id
_pdbx_chem_comp_identifier.type
_pdbx_chem_comp_identifier.program
_pdbx_chem_comp_identifier.program_version
_pdbx_chem_comp_identifier.identifier
P9D "SYSTEMATIC NAME" ACDLabs 12.01 "[{2-[({[(3R)-1-{8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxo-3-[(E)-2-(1H-tetrazol-5-yl)ethenyl]-4H-pyrido[1,2-a]pyrimidin-2-yl}piperidin-3-yl]oxy}carbonyl)amino]ethyl}(dimethyl)ammonio]acetate"
P9D "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.7.6
"2-[2-[[(3R)-1-[8-[(4-tert-butyl-1,3-thiazol-2-yl)carbamoyl]-4-oxidanylidene-3-[(E)-2-(1H-1,2,3,4-tetrazol-5-yl)ethenyl]pyrido[1,2-a]pyrimidin-2-yl]piperidin-3-yl]oxycarbonylamino]ethyl-dimethyl-azaniumyl]ethanoate"
#
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9D "Create component" 2012-01-06 PDBJ
P9D "Initial release" 2013-07-03 RCSB
#