data_P9H
#
_chem_comp.id P9H
_chem_comp.name "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-[(1~{R})-3-oxidanylidene-1-phenyl-propyl]sulfanyl-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
_chem_comp.type non-polymer
_chem_comp.pdbx_type HETAIN
_chem_comp.formula "C19 H25 N3 O7 S"
_chem_comp.mon_nstd_parent_comp_id ?
_chem_comp.pdbx_synonyms Glutathionyl-cinnamaldehyde
_chem_comp.pdbx_formal_charge 0
_chem_comp.pdbx_initial_date 2020-04-19
_chem_comp.pdbx_modified_date 2021-03-01
_chem_comp.pdbx_ambiguous_flag N
_chem_comp.pdbx_release_status REL
_chem_comp.pdbx_replaced_by ?
_chem_comp.pdbx_replaces ?
_chem_comp.formula_weight 439.483
_chem_comp.one_letter_code ?
_chem_comp.three_letter_code P9H
_chem_comp.pdbx_model_coordinates_details ?
_chem_comp.pdbx_model_coordinates_missing_flag N
_chem_comp.pdbx_ideal_coordinates_details Corina
_chem_comp.pdbx_ideal_coordinates_missing_flag N
_chem_comp.pdbx_model_coordinates_db_code 6YAW
_chem_comp.pdbx_subcomponent_list ?
_chem_comp.pdbx_processing_site PDBE
# #
loop_
_chem_comp_atom.comp_id
_chem_comp_atom.atom_id
_chem_comp_atom.alt_atom_id
_chem_comp_atom.type_symbol
_chem_comp_atom.charge
_chem_comp_atom.pdbx_align
_chem_comp_atom.pdbx_aromatic_flag
_chem_comp_atom.pdbx_leaving_atom_flag
_chem_comp_atom.pdbx_stereo_config
_chem_comp_atom.model_Cartn_x
_chem_comp_atom.model_Cartn_y
_chem_comp_atom.model_Cartn_z
_chem_comp_atom.pdbx_model_Cartn_x_ideal
_chem_comp_atom.pdbx_model_Cartn_y_ideal
_chem_comp_atom.pdbx_model_Cartn_z_ideal
_chem_comp_atom.pdbx_component_atom_id
_chem_comp_atom.pdbx_component_comp_id
_chem_comp_atom.pdbx_ordinal
P9H N1 N1 N 0 1 N N N 26.122 6.451 12.916 -6.303 -0.252 -1.544 N1 P9H 1
P9H C4 C1 C 0 1 Y N N 35.917 6.604 16.068 4.133 -1.933 1.493 C4 P9H 2
P9H C5 C2 C 0 1 Y N N 36.949 5.696 15.932 5.269 -1.367 2.040 C5 P9H 3
P9H C6 C3 C 0 1 Y N N 38.028 5.988 15.136 6.192 -0.741 1.223 C6 P9H 4
P9H C7 C4 C 0 1 Y N N 38.081 7.183 14.479 5.979 -0.683 -0.142 C7 P9H 5
P9H C8 C5 C 0 1 Y N N 37.051 8.096 14.611 4.844 -1.250 -0.689 C8 P9H 6
P9H C10 C6 C 0 1 N N R 31.785 10.894 14.594 0.050 0.753 0.018 C10 P9H 7
P9H C13 C7 C 0 1 N N N 27.992 7.908 13.492 -4.769 -0.108 0.359 C13 P9H 8
P9H C15 C8 C 0 1 N N N 27.632 7.179 11.092 -7.181 -0.573 0.698 C15 P9H 9
P9H C17 C9 C 0 1 N N N 31.000 14.096 16.453 1.215 4.337 -0.655 C17 P9H 10
P9H N N2 N 0 1 N N N 30.765 10.349 13.727 -1.133 0.088 -0.532 N P9H 11
P9H C C10 C 0 1 N N N 36.406 9.848 17.109 1.500 -4.638 -0.872 C P9H 12
P9H O O1 O 0 1 N N N 36.423 10.051 18.267 1.692 -5.541 -1.651 O P9H 13
P9H C1 C11 C 0 1 N N N 35.261 10.111 16.194 2.663 -3.996 -0.161 C1 P9H 14
P9H C11 C12 C 0 1 N N N 29.821 9.519 14.162 -2.332 0.241 0.065 C11 P9H 15
P9H C12 C13 C 0 1 N N N 28.740 9.181 13.168 -3.549 -0.443 -0.501 C12 P9H 16
P9H C14 C14 C 0 1 N N S 26.956 7.532 12.421 -6.005 -0.803 -0.215 C14 P9H 17
P9H C16 C15 C 0 1 N N N 31.454 12.364 14.839 0.127 2.162 -0.513 C16 P9H 18
P9H C18 C16 C 0 1 N N N 29.762 14.171 17.300 2.432 5.022 -0.089 C18 P9H 19
P9H C2 C17 C 0 1 N N R 34.813 8.810 15.564 2.685 -2.497 -0.469 C2 P9H 20
P9H C3 C18 C 0 1 Y N N 35.951 7.818 15.408 3.923 -1.880 0.127 C3 P9H 21
P9H C9 C19 C 0 1 N N N 33.199 10.762 14.012 1.306 -0.016 -0.395 C9 P9H 22
P9H N2 N3 N 0 1 N N N 31.369 12.751 16.096 1.140 2.968 -0.139 N2 P9H 23
P9H O1 O2 O 0 1 N N N 27.876 7.959 10.262 -7.997 0.278 0.432 O1 P9H 24
P9H O2 O3 O 0 1 N N N 27.904 5.977 10.991 -7.323 -1.314 1.809 O2 P9H 25
P9H O3 O4 O 0 1 N N N 29.838 9.029 15.271 -2.430 0.929 1.059 O3 P9H 26
P9H O4 O5 O 0 1 N N N 31.263 13.126 13.912 -0.723 2.570 -1.276 O4 P9H 27
P9H O5 O6 O 0 1 N N N 29.344 15.185 17.701 2.705 6.292 -0.426 O5 P9H 28
P9H O6 O7 O 0 1 N N N 29.219 13.062 17.582 3.163 4.427 0.668 O6 P9H 29
P9H S S1 S 0 1 N N N 33.929 9.105 13.968 1.214 -1.712 0.244 S P9H 30
P9H H1 H1 H 0 1 N N N 25.702 6.723 13.782 -7.076 -0.738 -1.973 H1 P9H 31
P9H H2 H2 H 0 1 N N N 25.406 6.249 12.247 -6.484 0.740 -1.493 H2 P9H 32
P9H H4 H4 H 0 1 N N N 35.073 6.362 16.698 3.412 -2.421 2.131 H4 P9H 33
P9H H5 H5 H 0 1 N N N 36.907 4.752 16.455 5.435 -1.412 3.106 H5 P9H 34
P9H H6 H6 H 0 1 N N N 38.832 5.275 15.030 7.079 -0.299 1.650 H6 P9H 35
P9H H7 H7 H 0 1 N N N 38.930 7.416 13.854 6.698 -0.191 -0.780 H7 P9H 36
P9H H8 H8 H 0 1 N N N 37.104 9.038 14.086 4.677 -1.204 -1.755 H8 P9H 37
P9H H9 H9 H 0 1 N N N 31.761 10.369 15.560 -0.020 0.778 1.106 H9 P9H 38
P9H H10 H10 H 0 1 N N N 27.471 8.042 14.452 -4.600 -0.452 1.380 H10 P9H 39
P9H H11 H11 H 0 1 N N N 28.719 7.087 13.580 -4.927 0.971 0.361 H11 P9H 40
P9H H12 H12 H 0 1 N N N 31.832 14.549 17.011 0.320 4.886 -0.361 H12 P9H 41
P9H H13 H13 H 0 1 N N N 30.825 14.666 15.529 1.285 4.312 -1.743 H13 P9H 42
P9H H14 H14 H 0 1 N N N 30.769 10.606 12.761 -1.055 -0.463 -1.327 H14 P9H 43
P9H H15 H15 H 0 1 N N N 37.301 9.434 16.669 0.494 -4.291 -0.684 H15 P9H 44
P9H H16 H16 H 0 1 N N N 35.574 10.812 15.406 2.558 -4.144 0.914 H16 P9H 45
P9H H17 H17 H 0 1 N N N 34.428 10.549 16.764 3.593 -4.451 -0.502 H17 P9H 46
P9H H18 H18 H 0 1 N N N 29.203 9.069 12.176 -3.392 -1.522 -0.503 H18 P9H 47
P9H H19 H19 H 0 1 N N N 28.019 10.011 13.144 -3.718 -0.099 -1.521 H19 P9H 48
P9H H20 H20 H 0 1 N N N 26.322 8.414 12.248 -5.814 -1.872 -0.300 H20 P9H 49
P9H H21 H21 H 0 1 N N N 34.056 8.357 16.221 2.688 -2.349 -1.549 H21 P9H 50
P9H H22 H22 H 0 1 N N N 33.864 11.400 14.612 1.376 -0.041 -1.482 H22 P9H 51
P9H H23 H23 H 0 1 N N N 33.167 11.136 12.978 2.187 0.479 0.015 H23 P9H 52
P9H H24 H24 H 0 1 N N N 31.566 12.092 16.822 1.820 2.642 0.471 H24 P9H 53
P9H H25 H25 H 0 1 N N N 28.326 5.817 10.155 -8.093 -1.130 2.364 H25 P9H 54
P9H H26 H26 H 0 1 N N N 28.577 15.022 18.237 3.497 6.689 -0.037 H26 P9H 55
# #
loop_
_chem_comp_bond.comp_id
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_aromatic_flag
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_ordinal
P9H O1 C15 DOUB N N 1
P9H O2 C15 SING N N 2
P9H C15 C14 SING N N 3
P9H C14 N1 SING N N 4
P9H C14 C13 SING N N 5
P9H C12 C13 SING N N 6
P9H C12 C11 SING N N 7
P9H N C11 SING N N 8
P9H N C10 SING N N 9
P9H O4 C16 DOUB N N 10
P9H S C9 SING N N 11
P9H S C2 SING N N 12
P9H C9 C10 SING N N 13
P9H C11 O3 DOUB N N 14
P9H C7 C8 DOUB Y N 15
P9H C7 C6 SING Y N 16
P9H C10 C16 SING N N 17
P9H C8 C3 SING Y N 18
P9H C16 N2 SING N N 19
P9H C6 C5 DOUB Y N 20
P9H C3 C2 SING N N 21
P9H C3 C4 DOUB Y N 22
P9H C2 C1 SING N N 23
P9H C5 C4 SING Y N 24
P9H N2 C17 SING N N 25
P9H C1 C SING N N 26
P9H C17 C18 SING N N 27
P9H C O DOUB N N 28
P9H C18 O6 DOUB N N 29
P9H C18 O5 SING N N 30
P9H N1 H1 SING N N 31
P9H N1 H2 SING N N 32
P9H C4 H4 SING N N 33
P9H C5 H5 SING N N 34
P9H C6 H6 SING N N 35
P9H C7 H7 SING N N 36
P9H C8 H8 SING N N 37
P9H C10 H9 SING N N 38
P9H C13 H10 SING N N 39
P9H C13 H11 SING N N 40
P9H C17 H12 SING N N 41
P9H C17 H13 SING N N 42
P9H N H14 SING N N 43
P9H C H15 SING N N 44
P9H C1 H16 SING N N 45
P9H C1 H17 SING N N 46
P9H C12 H18 SING N N 47
P9H C12 H19 SING N N 48
P9H C14 H20 SING N N 49
P9H C2 H21 SING N N 50
P9H C9 H22 SING N N 51
P9H C9 H23 SING N N 52
P9H N2 H24 SING N N 53
P9H O2 H25 SING N N 54
P9H O5 H26 SING N N 55
# #
loop_
_pdbx_chem_comp_descriptor.comp_id
_pdbx_chem_comp_descriptor.type
_pdbx_chem_comp_descriptor.program
_pdbx_chem_comp_descriptor.program_version
_pdbx_chem_comp_descriptor.descriptor
P9H InChI InChI 1.03 "InChI=1S/C19H25N3O7S/c20-13(19(28)29)6-7-16(24)22-14(18(27)21-10-17(25)26)11-30-15(8-9-23)12-4-2-1-3-5-12/h1-5,9,13-15H,6-8,10-11,20H2,(H,21,27)(H,22,24)(H,25,26)(H,28,29)/t13-,14-,15+/m0/s1"
P9H InChIKey InChI 1.03 OOFSDLPAAPKBNR-SOUVJXGZSA-N
P9H SMILES_CANONICAL CACTVS 3.385 "N[C@@H](CCC(=O)N[C@@H](CS[C@H](CC=O)c1ccccc1)C(=O)NCC(O)=O)C(O)=O"
P9H SMILES CACTVS 3.385 "N[CH](CCC(=O)N[CH](CS[CH](CC=O)c1ccccc1)C(=O)NCC(O)=O)C(O)=O"
P9H SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)[C@@H](CC=O)SC[C@@H](C(=O)NCC(=O)O)NC(=O)CC[C@@H](C(=O)O)N"
P9H SMILES "OpenEye OEToolkits" 2.0.7 "c1ccc(cc1)C(CC=O)SCC(C(=O)NCC(=O)O)NC(=O)CCC(C(=O)O)N"
#
_pdbx_chem_comp_identifier.comp_id P9H
_pdbx_chem_comp_identifier.type "SYSTEMATIC NAME"
_pdbx_chem_comp_identifier.program "OpenEye OEToolkits"
_pdbx_chem_comp_identifier.program_version 2.0.7
_pdbx_chem_comp_identifier.identifier "(2~{S})-2-azanyl-5-[[(2~{R})-1-(2-hydroxy-2-oxoethylamino)-1-oxidanylidene-3-[(1~{R})-3-oxidanylidene-1-phenyl-propyl]sulfanyl-propan-2-yl]amino]-5-oxidanylidene-pentanoic acid"
# #
loop_
_pdbx_chem_comp_audit.comp_id
_pdbx_chem_comp_audit.action_type
_pdbx_chem_comp_audit.date
_pdbx_chem_comp_audit.processing_site
P9H "Create component" 2020-04-19 PDBE
P9H "Initial release" 2020-08-26 RCSB
P9H "Modify synonyms" 2021-03-01 PDBE
#
_pdbx_chem_comp_synonyms.ordinal 1
_pdbx_chem_comp_synonyms.comp_id P9H
_pdbx_chem_comp_synonyms.name Glutathionyl-cinnamaldehyde
_pdbx_chem_comp_synonyms.provenance ?
_pdbx_chem_comp_synonyms.type ?
##