data_P9R # _chem_comp.id P9R _chem_comp.name "[(1~{S},2~{S})-2-(cyclohexylmethyl)cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" _chem_comp.type non-polymer _chem_comp.pdbx_type HETAIN _chem_comp.formula "C25 H42 N3 O8 S" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 1 _chem_comp.pdbx_initial_date 2022-05-26 _chem_comp.pdbx_modified_date 2022-06-17 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 544.681 _chem_comp.one_letter_code ? _chem_comp.three_letter_code P9R _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag Y _chem_comp.pdbx_ideal_coordinates_details Corina _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 8CZU _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal P9R C14 C1 C 0 1 N N N -20.336 23.807 7.659 3.194 3.123 0.334 C14 P9R 1 P9R C16 C2 C 0 1 N N N -22.653 23.553 8.040 4.203 5.100 0.447 C16 P9R 2 P9R C17 C3 C 0 1 N N N -22.477 24.559 6.887 4.990 4.375 -0.623 C17 P9R 3 P9R C19 C4 C 0 1 N N R -20.690 28.428 5.739 5.639 -0.592 -0.460 C19 P9R 4 P9R C13 C5 C 0 1 N N R -20.969 24.626 6.562 4.289 3.001 -0.706 C13 P9R 5 P9R C12 C6 C 0 1 N N N -20.368 26.022 6.464 5.259 1.875 -0.343 C12 P9R 6 P9R C11 C7 C 0 1 N N S -21.041 26.939 5.417 4.611 0.524 -0.655 C11 P9R 7 P9R C02 C8 C 0 1 N N N -21.261 23.524 2.370 -1.268 -0.354 0.455 C02 P9R 8 P9R C04 C9 C 0 1 N N S -20.799 25.818 1.665 1.156 -0.424 0.692 C04 P9R 9 P9R C05 C10 C 0 1 N N N -21.386 26.738 0.558 1.465 -1.678 1.513 C05 P9R 10 P9R C06 C11 C 0 1 N N N -20.966 26.330 -0.875 2.680 -1.417 2.405 C06 P9R 11 P9R C07 C12 C 0 1 N N N -19.474 25.975 -0.975 2.327 -0.358 3.451 C07 P9R 12 P9R C08 C13 C 0 1 N N N -21.234 27.434 -1.900 3.083 -2.714 3.109 C08 P9R 13 P9R C09 C14 C 0 1 N N N -21.411 26.140 3.038 2.303 -0.141 -0.243 C09 P9R 14 P9R C23 C15 C 0 1 N N N -22.455 21.605 3.085 -3.654 -0.311 0.424 C23 P9R 15 P9R C24 C16 C 0 1 N N S -21.937 20.365 2.437 -4.815 -0.713 -0.488 C24 P9R 16 P9R C25 C17 C 0 1 N N R -22.964 19.248 2.165 -6.229 -0.336 -0.039 C25 P9R 17 P9R C26 C18 C 0 1 N N N -23.077 18.741 0.753 -7.237 0.045 -1.125 C26 P9R 18 P9R C27 C19 C 0 1 N N N -23.090 17.225 0.561 -8.541 0.505 -0.471 C27 P9R 19 P9R C28 C20 C 0 1 N N N -24.068 16.739 -0.518 -9.505 1.003 -1.551 C28 P9R 20 P9R C29 C21 C 0 1 N N N -23.875 15.298 -0.955 -10.809 1.463 -0.897 C29 P9R 21 P9R C30 C22 C 0 1 N N N -22.442 15.033 -1.340 -11.445 0.291 -0.147 C30 P9R 22 P9R C31 C23 C 0 1 N N N -21.532 15.333 -0.178 -10.482 -0.207 0.932 C31 P9R 23 P9R C32 C24 C 0 1 N N N -21.649 16.777 0.232 -9.177 -0.667 0.279 C32 P9R 24 P9R C33 C25 C 0 1 N N N -21.770 19.003 3.075 -5.771 -1.795 0.020 C33 P9R 25 P9R N03 N1 N 0 1 N N N -21.183 24.436 1.339 -0.067 -0.638 -0.086 N03 P9R 26 P9R N10 N2 N 0 1 N N N -20.603 26.604 4.060 3.477 0.307 0.247 N10 P9R 27 P9R N15 N3 N 0 1 N N N -21.304 23.222 8.462 3.264 4.340 0.891 N15 P9R 28 P9R O01 O1 O 0 1 N N N -20.502 23.423 3.306 -1.333 0.164 1.552 O01 P9R 29 P9R O18 O2 O 0 1 N N N -19.133 23.635 7.870 2.384 2.264 0.612 O18 P9R 30 P9R O20 O3 O 0 1 N N N -21.624 29.209 5.062 6.828 -0.277 -1.187 O20 P9R 31 P9R O21 O4 O 0 1 N N N -22.636 25.954 3.223 2.171 -0.315 -1.436 O21 P9R 32 P9R O22 O5 O 0 1 N N N -22.349 22.732 2.217 -2.396 -0.645 -0.220 O22 P9R 33 P9R H1 H1 H 0 1 N N N -23.580 23.176 8.447 4.399 6.107 0.786 H1 P9R 34 P9R H2 H2 H 0 1 N N N -22.840 25.551 7.194 4.920 4.900 -1.575 H2 P9R 35 P9R H3 H3 H 0 1 N N N -23.038 24.221 6.003 6.032 4.261 -0.323 H3 P9R 36 P9R H4 H4 H 0 1 N N N -20.092 28.719 6.616 5.876 -0.686 0.600 H4 P9R 37 P9R H6 H6 H 0 1 N N N -20.804 24.111 5.604 3.865 2.843 -1.697 H6 P9R 38 P9R H7 H7 H 0 1 N N N -19.305 25.920 6.199 6.174 1.982 -0.924 H7 P9R 39 P9R H8 H8 H 0 1 N N N -20.456 26.504 7.449 5.495 1.927 0.720 H8 P9R 40 P9R H9 H9 H 0 1 N N N -22.131 26.816 5.494 4.261 0.519 -1.687 H9 P9R 41 P9R H10 H10 H 0 1 N N N -19.705 25.927 1.702 1.016 0.424 1.363 H10 P9R 42 P9R H11 H11 H 0 1 N N N -21.041 27.766 0.742 0.604 -1.926 2.135 H11 P9R 43 P9R H12 H12 H 0 1 N N N -22.484 26.702 0.622 1.679 -2.509 0.841 H12 P9R 44 P9R H13 H13 H 0 1 N N N -21.550 25.443 -1.162 3.510 -1.063 1.794 H13 P9R 45 P9R H14 H14 H 0 1 N N N -19.236 25.181 -0.252 3.212 -0.124 4.043 H14 P9R 46 P9R H15 H15 H 0 1 N N N -19.248 25.623 -1.993 1.977 0.545 2.950 H15 P9R 47 P9R H16 H16 H 0 1 N N N -18.869 26.867 -0.753 1.542 -0.739 4.104 H16 P9R 48 P9R H17 H17 H 0 1 N N N -22.295 27.720 -1.862 3.334 -3.470 2.365 H17 P9R 49 P9R H18 H18 H 0 1 N N N -20.610 28.309 -1.667 3.949 -2.529 3.745 H18 P9R 50 P9R H19 H19 H 0 1 N N N -20.989 27.066 -2.907 2.253 -3.069 3.721 H19 P9R 51 P9R H20 H20 H 0 1 N N N -21.873 21.801 3.998 -3.693 0.762 0.610 H20 P9R 52 P9R H21 H21 H 0 1 N N N -23.512 21.455 3.349 -3.732 -0.848 1.369 H21 P9R 53 P9R H22 H22 H 0 1 N N N -21.256 20.548 1.593 -4.604 -0.690 -1.557 H22 P9R 54 P9R H23 H23 H 0 1 N N N -23.922 19.376 2.690 -6.331 0.198 0.906 H23 P9R 55 P9R H24 H24 H 0 1 N N N -22.222 19.140 0.187 -6.830 0.853 -1.732 H24 P9R 56 P9R H25 H25 H 0 1 N N N -24.013 19.137 0.332 -7.433 -0.821 -1.758 H25 P9R 57 P9R H26 H26 H 0 1 N N N -23.379 16.762 1.516 -8.331 1.313 0.229 H26 P9R 58 P9R H27 H27 H 0 1 N N N -23.949 17.383 -1.402 -9.052 1.838 -2.085 H27 P9R 59 P9R H28 H28 H 0 1 N N N -25.090 16.842 -0.124 -9.715 0.194 -2.251 H28 P9R 60 P9R H29 H29 H 0 1 N N N -24.523 15.096 -1.821 -10.599 2.271 -0.197 H29 P9R 61 P9R H30 H30 H 0 1 N N N -24.153 14.631 -0.126 -11.496 1.818 -1.666 H30 P9R 62 P9R H31 H31 H 0 1 N N N -22.331 13.977 -1.626 -12.375 0.619 0.319 H31 P9R 63 P9R H32 H32 H 0 1 N N N -22.169 15.674 -2.191 -11.655 -0.518 -0.847 H32 P9R 64 P9R H33 H33 H 0 1 N N N -21.809 14.693 0.672 -10.272 0.601 1.633 H33 P9R 65 P9R H34 H34 H 0 1 N N N -20.492 15.124 -0.470 -10.935 -1.042 1.467 H34 P9R 66 P9R H35 H35 H 0 1 N N N -21.026 16.934 1.125 -9.387 -1.476 -0.422 H35 P9R 67 P9R H36 H36 H 0 1 N N N -21.273 17.401 -0.592 -8.491 -1.022 1.048 H36 P9R 68 P9R H37 H37 H 0 1 N N N -21.923 18.884 4.158 -6.188 -2.483 -0.715 H37 P9R 69 P9R H38 H38 H 0 1 N N N -20.957 18.340 2.744 -5.572 -2.220 1.004 H38 P9R 70 P9R H39 H39 H 0 1 N N N -21.382 24.166 0.397 -0.012 -0.984 -0.990 H39 P9R 71 P9R H40 H40 H 0 1 N N N -19.632 26.721 3.854 3.570 0.485 1.195 H40 P9R 72 P9R H41 H41 H 0 1 N N N -21.450 30.128 5.229 7.249 0.550 -0.914 H41 P9R 73 P9R S1 S1 S 1 1 N Y N ? ? ? 4.955 -2.158 -1.068 S1 P9R 74 P9R O1 O6 O 0 1 N Y N ? ? ? 5.863 -3.250 -1.044 O1 P9R 75 P9R O2 O7 O 0 1 N Y N ? ? ? 3.749 -2.518 -0.212 O2 P9R 76 P9R O3 O8 O 0 1 N Y N ? ? ? 4.491 -1.952 -2.503 O3 P9R 77 P9R H5 H5 H 0 1 N Y N ? ? ? 3.318 -3.345 -0.467 H5 P9R 78 P9R H42 H42 H 0 1 N Y N ? ? ? 3.865 -1.223 -2.613 H42 P9R 79 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal P9R C08 C06 SING N N 1 P9R C30 C29 SING N N 2 P9R C30 C31 SING N N 3 P9R C07 C06 SING N N 4 P9R C29 C28 SING N N 5 P9R C06 C05 SING N N 6 P9R C28 C27 SING N N 7 P9R C31 C32 SING N N 8 P9R C32 C27 SING N N 9 P9R C05 C04 SING N N 10 P9R C27 C26 SING N N 11 P9R C26 C25 SING N N 12 P9R N03 C04 SING N N 13 P9R N03 C02 SING N N 14 P9R C04 C09 SING N N 15 P9R C25 C24 SING N N 16 P9R C25 C33 SING N N 17 P9R O22 C02 SING N N 18 P9R O22 C23 SING N N 19 P9R C02 O01 DOUB N N 20 P9R C24 C33 SING N N 21 P9R C24 C23 SING N N 22 P9R C09 O21 DOUB N N 23 P9R C09 N10 SING N N 24 P9R N10 C11 SING N N 25 P9R O20 C19 SING N N 26 P9R C11 C19 SING N N 27 P9R C11 C12 SING N N 28 P9R C12 C13 SING N N 29 P9R C13 C17 SING N N 30 P9R C13 C14 SING N N 31 P9R C17 C16 SING N N 32 P9R C14 O18 DOUB N N 33 P9R C14 N15 SING N N 34 P9R C16 N15 DOUB N N 35 P9R C16 H1 SING N N 36 P9R C17 H2 SING N N 37 P9R C17 H3 SING N N 38 P9R C19 H4 SING N N 39 P9R C13 H6 SING N N 40 P9R C12 H7 SING N N 41 P9R C12 H8 SING N N 42 P9R C11 H9 SING N N 43 P9R C04 H10 SING N N 44 P9R C05 H11 SING N N 45 P9R C05 H12 SING N N 46 P9R C06 H13 SING N N 47 P9R C07 H14 SING N N 48 P9R C07 H15 SING N N 49 P9R C07 H16 SING N N 50 P9R C08 H17 SING N N 51 P9R C08 H18 SING N N 52 P9R C08 H19 SING N N 53 P9R C23 H20 SING N N 54 P9R C23 H21 SING N N 55 P9R C24 H22 SING N N 56 P9R C25 H23 SING N N 57 P9R C26 H24 SING N N 58 P9R C26 H25 SING N N 59 P9R C27 H26 SING N N 60 P9R C28 H27 SING N N 61 P9R C28 H28 SING N N 62 P9R C29 H29 SING N N 63 P9R C29 H30 SING N N 64 P9R C30 H31 SING N N 65 P9R C30 H32 SING N N 66 P9R C31 H33 SING N N 67 P9R C31 H34 SING N N 68 P9R C32 H35 SING N N 69 P9R C32 H36 SING N N 70 P9R C33 H37 SING N N 71 P9R C33 H38 SING N N 72 P9R N03 H39 SING N N 73 P9R N10 H40 SING N N 74 P9R O20 H41 SING N N 75 P9R C19 S1 SING N N 76 P9R S1 O1 DOUB N N 77 P9R S1 O2 SING N N 78 P9R S1 O3 SING N N 79 P9R O2 H5 SING N N 80 P9R O3 H42 SING N N 81 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor P9R InChI InChI 1.03 "InChI=1S/C25H40N3O8S/c1-15(2)10-20(28-25(32)36-14-19-12-18(19)11-16-6-4-3-5-7-16)23(30)27-21(24(31)37(33,34)35)13-17-8-9-26-22(17)29/h9,15-21,24,31H,3-8,10-14H2,1-2H3,(H2-2,27,28,30,32,33,34,35)/q-1/p+2/t17-,18-,19+,20-,21-,24+/m0/s1" P9R InChIKey InChI 1.03 UNYDBHQZGVQZAY-KAXVZBFOSA-P P9R SMILES_CANONICAL CACTVS 3.385 "CC(C)C[C@H](NC(=O)OC[C@H]1C[C@@H]1CC2CCCCC2)C(=O)N[C@@H](C[C@@H]3CC=NC3=O)[C@H](O)[S+](O)(O)=O" P9R SMILES CACTVS 3.385 "CC(C)C[CH](NC(=O)OC[CH]1C[CH]1CC2CCCCC2)C(=O)N[CH](C[CH]3CC=NC3=O)[CH](O)[S+](O)(O)=O" P9R SMILES_CANONICAL "OpenEye OEToolkits" 2.0.7 "CC(C)C[C@@H](C(=O)N[C@@H](C[C@@H]1CC=NC1=O)[C@H](O)[S+](=O)(O)O)NC(=O)OC[C@H]2C[C@@H]2CC3CCCCC3" P9R SMILES "OpenEye OEToolkits" 2.0.7 "CC(C)CC(C(=O)NC(CC1CC=NC1=O)C(O)[S+](=O)(O)O)NC(=O)OCC2CC2CC3CCCCC3" # _pdbx_chem_comp_identifier.comp_id P9R _pdbx_chem_comp_identifier.type "SYSTEMATIC NAME" _pdbx_chem_comp_identifier.program "OpenEye OEToolkits" _pdbx_chem_comp_identifier.program_version 2.0.7 _pdbx_chem_comp_identifier.identifier "[(1~{S},2~{S})-2-(cyclohexylmethyl)cyclopropyl]methyl ~{N}-[(2~{S})-1-[[(2~{S})-1-[bis(oxidanyl)-oxidanylidene-$l^{5}-sulfanyl]-1-oxidanyl-3-[(3~{R})-2-oxidanylidene-3,4-dihydropyrrol-3-yl]propan-2-yl]amino]-4-methyl-1-oxidanylidene-pentan-2-yl]carbamate" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site P9R "Create component" 2022-05-26 RCSB P9R "Initial release" 2022-06-22 RCSB #