data_PA1 # _chem_comp.id PA1 _chem_comp.name 2-amino-2-deoxy-alpha-D-glucopyranose _chem_comp.type "D-saccharide, alpha linking" _chem_comp.pdbx_type ATOMS _chem_comp.formula "C6 H13 N O5" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms "alpah-D-glucosamine; 2-amino-2-deoxy-alpha-D-glucose; 2-amino-2-deoxy-D-glucose; 2-amino-2-deoxy-glucose" _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 1999-07-08 _chem_comp.pdbx_modified_date 2021-08-24 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 179.171 _chem_comp.one_letter_code ? _chem_comp.three_letter_code ? _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1PBR _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # # loop_ _pdbx_chem_comp_synonyms.ordinal _pdbx_chem_comp_synonyms.comp_id _pdbx_chem_comp_synonyms.name _pdbx_chem_comp_synonyms.provenance _pdbx_chem_comp_synonyms.type 1 PA1 alpha-D-glucosamine PDB ? 2 PA1 2-amino-2-deoxy-alpha-D-glucose PDB ? 3 PA1 2-amino-2-deoxy-D-glucose PDB ? 4 PA1 2-amino-2-deoxy-glucose PDB ? # # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PA1 C1 C1 C 0 1 N N S 1.980 -0.879 43.999 1.564 0.223 0.505 C1 PA1 1 PA1 O1 O1 O 0 1 N Y N 1.764 -2.297 44.213 1.770 -1.188 0.422 O1 PA1 2 PA1 C2 C2 C 0 1 N N R 3.316 -0.407 44.685 0.529 0.524 1.591 C2 PA1 3 PA1 N2 N2 N 0 1 N N N 4.453 -1.352 44.535 1.026 0.047 2.889 N2 PA1 4 PA1 C3 C3 C 0 1 N N R 3.131 -0.192 46.199 -0.780 -0.193 1.249 C3 PA1 5 PA1 O3 O3 O 0 1 N N N 4.258 0.481 46.756 -1.802 0.195 2.169 O3 PA1 6 PA1 C4 C4 C 0 1 N N S 1.858 0.617 46.490 -1.194 0.194 -0.174 C4 PA1 7 PA1 O4 O4 O 0 1 N N N 1.727 0.843 47.890 -2.330 -0.576 -0.571 O4 PA1 8 PA1 C5 C5 C 0 1 N N R 0.618 -0.077 45.884 -0.029 -0.081 -1.127 C5 PA1 9 PA1 O5 O5 O 0 1 N N N 0.822 -0.127 44.456 1.098 0.707 -0.753 O5 PA1 10 PA1 C6 C6 C 0 1 N N N -0.699 0.652 46.145 -0.447 0.274 -2.556 C6 PA1 11 PA1 O6 O6 O 0 1 N N N -1.035 0.630 47.526 0.636 0.011 -3.449 O6 PA1 12 PA1 H1 H1 H 0 1 N N N 2.009 -0.659 42.921 2.505 0.713 0.755 H1 PA1 13 PA1 HO1 HO1 H 0 1 N Y N 0.957 -2.581 43.799 2.427 -1.334 -0.271 HO1 PA1 14 PA1 H2 H2 H 0 1 N N N 3.604 0.559 44.233 0.354 1.599 1.640 H2 PA1 15 PA1 HN21 HN21 H 0 0 N N N 5.282 -0.986 45.017 1.886 0.543 3.070 HN21 PA1 16 PA1 HN22 HN22 H 0 0 N Y N 4.235 -2.242 44.998 0.363 0.355 3.584 HN22 PA1 17 PA1 H3 H3 H 0 1 N N N 3.044 -1.188 46.649 -0.629 -1.271 1.304 H3 PA1 18 PA1 HO3 HO3 H 0 1 N Y N 4.298 1.336 46.320 -1.501 -0.067 3.049 HO3 PA1 19 PA1 H4 H4 H 0 1 N N N 1.966 1.564 45.945 -1.446 1.255 -0.203 H4 PA1 20 PA1 HO4 HO4 H 0 1 N Y N 1.644 -0.026 48.291 -2.552 -0.304 -1.472 HO4 PA1 21 PA1 H5 H5 H 0 1 N N N 0.519 -1.112 46.244 0.235 -1.137 -1.080 H5 PA1 22 PA1 H61 H61 H 0 1 N N N -1.503 0.179 45.555 -1.309 -0.327 -2.843 H61 PA1 23 PA1 H62 H62 H 0 1 N N N -0.639 1.691 45.797 -0.709 1.331 -2.605 H62 PA1 24 PA1 HO6 HO6 H 0 1 N Y N -1.106 -0.297 47.767 0.332 0.248 -4.335 HO6 PA1 25 # # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PA1 C1 O1 SING N N 1 PA1 C1 C2 SING N N 2 PA1 C1 O5 SING N N 3 PA1 C1 H1 SING N N 4 PA1 O1 HO1 SING N N 5 PA1 C2 N2 SING N N 6 PA1 C2 C3 SING N N 7 PA1 C2 H2 SING N N 8 PA1 N2 HN21 SING N N 9 PA1 N2 HN22 SING N N 10 PA1 C3 O3 SING N N 11 PA1 C3 C4 SING N N 12 PA1 C3 H3 SING N N 13 PA1 O3 HO3 SING N N 14 PA1 C4 O4 SING N N 15 PA1 C4 C5 SING N N 16 PA1 C4 H4 SING N N 17 PA1 O4 HO4 SING N N 18 PA1 C5 O5 SING N N 19 PA1 C5 C6 SING N N 20 PA1 C5 H5 SING N N 21 PA1 C6 O6 SING N N 22 PA1 C6 H61 SING N N 23 PA1 C6 H62 SING N N 24 PA1 O6 HO6 SING N N 25 # # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PA1 SMILES ACDLabs 10.04 "OC1C(O)C(OC(O)C1N)CO" PA1 SMILES_CANONICAL CACTVS 3.341 "N[C@H]1[C@@H](O)O[C@H](CO)[C@@H](O)[C@@H]1O" PA1 SMILES CACTVS 3.341 "N[CH]1[CH](O)O[CH](CO)[CH](O)[CH]1O" PA1 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@@H]1[C@H]([C@@H]([C@H]([C@H](O1)O)N)O)O)O" PA1 SMILES "OpenEye OEToolkits" 1.5.0 "C(C1C(C(C(C(O1)O)N)O)O)O" PA1 InChI InChI 1.03 "InChI=1S/C6H13NO5/c7-3-5(10)4(9)2(1-8)12-6(3)11/h2-6,8-11H,1,7H2/t2-,3-,4-,5-,6+/m1/s1" PA1 InChIKey InChI 1.03 MSWZFWKMSRAUBD-UKFBFLRUSA-N # # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PA1 "SYSTEMATIC NAME" ACDLabs 10.04 2-amino-2-deoxy-alpha-D-glucopyranose PA1 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R,5S,6R)-3-amino-6-(hydroxymethyl)oxane-2,4,5-triol" PA1 "CONDENSED IUPAC CARBOHYDRATE SYMBOL" GMML 1.0 DGlcpNa PA1 "COMMON NAME" GMML 1.0 a-D-glucopyranosamine PA1 "IUPAC CARBOHYDRATE SYMBOL" PDB-CARE 1.0 a-D-GlcpN PA1 "SNFG CARBOHYDRATE SYMBOL" GMML 1.0 GlcN # # loop_ _pdbx_chem_comp_feature.comp_id _pdbx_chem_comp_feature.type _pdbx_chem_comp_feature.value _pdbx_chem_comp_feature.source _pdbx_chem_comp_feature.support PA1 "CARBOHYDRATE ISOMER" D PDB ? PA1 "CARBOHYDRATE RING" pyranose PDB ? PA1 "CARBOHYDRATE ANOMER" alpha PDB ? PA1 "CARBOHYDRATE PRIMARY CARBONYL GROUP" aldose PDB ? # # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PA1 "Create component" 1999-07-08 RCSB PA1 "Modify descriptor" 2011-06-04 RCSB PA1 "Modify leaving atom flag" 2012-06-13 RCSB PA1 "Other modification" 2019-08-12 RCSB PA1 "Other modification" 2019-12-19 RCSB PA1 "Other modification" 2020-07-03 RCSB PA1 "Modify synonyms" 2020-07-17 RCSB PA1 "Modify synonyms" 2021-08-24 RCSB ##