data_PA5 # _chem_comp.id PA5 _chem_comp.name "5-PHOSPHOARABINONIC ACID" _chem_comp.type SACCHARIDE _chem_comp.pdbx_type HETAIN _chem_comp.formula "C5 H11 O9 P" _chem_comp.mon_nstd_parent_comp_id ? _chem_comp.pdbx_synonyms ? _chem_comp.pdbx_formal_charge 0 _chem_comp.pdbx_initial_date 2000-03-08 _chem_comp.pdbx_modified_date 2011-06-04 _chem_comp.pdbx_ambiguous_flag N _chem_comp.pdbx_release_status REL _chem_comp.pdbx_replaced_by ? _chem_comp.pdbx_replaces ? _chem_comp.formula_weight 246.109 _chem_comp.one_letter_code ? _chem_comp.three_letter_code PA5 _chem_comp.pdbx_model_coordinates_details ? _chem_comp.pdbx_model_coordinates_missing_flag N _chem_comp.pdbx_ideal_coordinates_details ? _chem_comp.pdbx_ideal_coordinates_missing_flag N _chem_comp.pdbx_model_coordinates_db_code 1C7R _chem_comp.pdbx_subcomponent_list ? _chem_comp.pdbx_processing_site RCSB # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.alt_atom_id _chem_comp_atom.type_symbol _chem_comp_atom.charge _chem_comp_atom.pdbx_align _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_leaving_atom_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.model_Cartn_x _chem_comp_atom.model_Cartn_y _chem_comp_atom.model_Cartn_z _chem_comp_atom.pdbx_model_Cartn_x_ideal _chem_comp_atom.pdbx_model_Cartn_y_ideal _chem_comp_atom.pdbx_model_Cartn_z_ideal _chem_comp_atom.pdbx_component_atom_id _chem_comp_atom.pdbx_component_comp_id _chem_comp_atom.pdbx_ordinal PA5 O1A O1A O 0 1 N N N 51.335 -12.388 21.123 -0.465 0.571 -4.861 O1A PA5 1 PA5 C1 C1 C 0 1 N N N 51.824 -11.612 21.960 -0.249 -0.285 -4.038 C1 PA5 2 PA5 O1 O1 O 0 1 N N N 52.537 -10.479 21.383 -0.788 -1.506 -4.182 O1 PA5 3 PA5 C2 C2 C 0 1 N N S 52.725 -12.421 22.988 0.625 0.016 -2.848 C2 PA5 4 PA5 O2 O2 O 0 1 N N N 54.023 -11.813 22.996 1.074 1.371 -2.918 O2 PA5 5 PA5 C3 C3 C 0 1 N N R 51.995 -12.383 24.399 -0.176 -0.189 -1.561 C3 PA5 6 PA5 O3 O3 O 0 1 N N N 52.582 -13.181 25.438 -1.304 0.687 -1.557 O3 PA5 7 PA5 C4 C4 C 0 1 N N R 50.520 -12.666 23.999 0.712 0.117 -0.353 C4 PA5 8 PA5 O4 O4 O 0 1 N N N 49.668 -12.972 25.178 1.840 -0.759 -0.357 O4 PA5 9 PA5 C5 C5 C 0 1 N N N 50.421 -13.854 23.197 -0.089 -0.088 0.933 C5 PA5 10 PA5 O5 O5 O 0 1 N N N 49.039 -14.160 22.780 0.740 0.198 2.061 O5 PA5 11 PA5 P P P 0 1 N N N 48.956 -15.106 21.443 -0.162 -0.037 3.374 P PA5 12 PA5 O1P O1P O 0 1 N N N 47.586 -15.755 21.258 -0.627 -1.441 3.407 O1P PA5 13 PA5 O2P O2P O 0 1 N N N 49.297 -14.231 20.218 0.714 0.268 4.689 O2P PA5 14 PA5 O3P O3P O 0 1 N N N 49.981 -16.262 21.477 -1.433 0.949 3.335 O3P PA5 15 PA5 HO1 HO1 H 0 1 N N N 52.911 -9.885 22.023 -1.349 -1.700 -4.945 HO1 PA5 16 PA5 HC2 HC2 H 0 1 N N N 52.860 -13.492 22.712 1.485 -0.652 -2.851 HC2 PA5 17 PA5 HO2 HO2 H 0 1 N N N 54.561 -12.296 23.610 0.283 1.928 -2.913 HO2 PA5 18 PA5 HC3 HC3 H 0 1 N N N 52.097 -11.411 24.936 -0.518 -1.222 -1.507 HC3 PA5 19 PA5 HO3 HO3 H 0 1 N N N 52.145 -13.158 26.281 -0.958 1.589 -1.606 HO3 PA5 20 PA5 HC4 HC4 H 0 1 N N N 50.187 -11.744 23.465 1.054 1.150 -0.407 HC4 PA5 21 PA5 HO4 HO4 H 0 1 N N N 48.766 -13.145 24.933 1.494 -1.660 -0.308 HO4 PA5 22 PA5 H51 H51 H 0 1 N N N 51.098 -13.793 22.313 -0.949 0.580 0.936 H51 PA5 23 PA5 H52 H52 H 0 1 N N N 50.879 -14.725 23.720 -0.431 -1.121 0.987 H52 PA5 24 PA5 HOP2 2HOP H 0 0 N N N 49.248 -14.779 19.443 0.138 0.116 5.451 HOP2 PA5 25 PA5 HOP3 3HOP H 0 0 N N N 49.932 -16.810 20.702 -1.087 1.851 3.314 HOP3 PA5 26 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal PA5 O1A C1 DOUB N N 1 PA5 C1 O1 SING N N 2 PA5 C1 C2 SING N N 3 PA5 O1 HO1 SING N N 4 PA5 C2 O2 SING N N 5 PA5 C2 C3 SING N N 6 PA5 C2 HC2 SING N N 7 PA5 O2 HO2 SING N N 8 PA5 C3 O3 SING N N 9 PA5 C3 C4 SING N N 10 PA5 C3 HC3 SING N N 11 PA5 O3 HO3 SING N N 12 PA5 C4 O4 SING N N 13 PA5 C4 C5 SING N N 14 PA5 C4 HC4 SING N N 15 PA5 O4 HO4 SING N N 16 PA5 C5 O5 SING N N 17 PA5 C5 H51 SING N N 18 PA5 C5 H52 SING N N 19 PA5 O5 P SING N N 20 PA5 P O1P DOUB N N 21 PA5 P O2P SING N N 22 PA5 P O3P SING N N 23 PA5 O2P HOP2 SING N N 24 PA5 O3P HOP3 SING N N 25 # loop_ _pdbx_chem_comp_descriptor.comp_id _pdbx_chem_comp_descriptor.type _pdbx_chem_comp_descriptor.program _pdbx_chem_comp_descriptor.program_version _pdbx_chem_comp_descriptor.descriptor PA5 SMILES ACDLabs 10.04 "O=P(O)(O)OCC(O)C(O)C(O)C(=O)O" PA5 SMILES_CANONICAL CACTVS 3.341 "O[C@H](CO[P](O)(O)=O)[C@@H](O)[C@H](O)C(O)=O" PA5 SMILES CACTVS 3.341 "O[CH](CO[P](O)(O)=O)[CH](O)[CH](O)C(O)=O" PA5 SMILES_CANONICAL "OpenEye OEToolkits" 1.5.0 "C([C@H]([C@H]([C@@H](C(=O)O)O)O)O)OP(=O)(O)O" PA5 SMILES "OpenEye OEToolkits" 1.5.0 "C(C(C(C(C(=O)O)O)O)O)OP(=O)(O)O" PA5 InChI InChI 1.03 "InChI=1S/C5H11O9P/c6-2(1-14-15(11,12)13)3(7)4(8)5(9)10/h2-4,6-8H,1H2,(H,9,10)(H2,11,12,13)/t2-,3-,4+/m1/s1" PA5 InChIKey InChI 1.03 HNECGPFIYSOYHF-JJYYJPOSSA-N # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version _pdbx_chem_comp_identifier.identifier PA5 "SYSTEMATIC NAME" ACDLabs 10.04 "5-O-phosphono-D-arabinonic acid" PA5 "SYSTEMATIC NAME" "OpenEye OEToolkits" 1.5.0 "(2S,3R,4R)-2,3,4-trihydroxy-5-phosphonooxy-pentanoic acid" # loop_ _pdbx_chem_comp_audit.comp_id _pdbx_chem_comp_audit.action_type _pdbx_chem_comp_audit.date _pdbx_chem_comp_audit.processing_site PA5 "Create component" 2000-03-08 RCSB PA5 "Modify descriptor" 2011-06-04 RCSB #